Wall clock time and date at job start Fri Apr 10 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39874 * 126.03808 * 2 1 4 4 N 1.30841 * 108.20135 * 179.97438 * 3 2 1 5 5 N 1.40083 * 108.20492 * 0.02562 * 4 3 2 6 6 C 1.46497 * 126.03646 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47118 * 305.02295 * 6 5 4 8 8 O 1.21277 * 120.00359 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99872 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99747 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46944 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00036 * 294.29963 * 12 11 10 14 14 C 1.53236 * 109.34098 * 172.74385 * 13 12 11 15 15 N 1.47077 * 108.51979 * 53.83282 * 14 13 12 16 16 C 1.36939 * 120.88020 * 128.83603 * 15 14 13 17 17 H 1.08002 * 119.99823 * 206.56347 * 16 15 14 18 18 C 1.38815 * 120.00233 * 26.56106 * 16 15 14 19 19 N 1.31623 * 119.99633 * 17.02143 * 18 16 15 20 20 Si 1.86793 * 120.00141 * 197.01548 * 18 16 15 21 21 H 1.48504 * 109.47121 * 90.00518 * 20 18 16 22 22 H 1.48497 * 109.47296 * 210.00152 * 20 18 16 23 23 H 1.48500 * 109.47418 * 330.00408 * 20 18 16 24 24 C 1.47076 * 118.23803 * 308.81144 * 15 14 13 25 25 C 1.46895 * 111.00137 * 169.99921 * 12 11 10 26 26 C 1.34958 * 107.92500 * 359.75697 * 5 4 3 27 27 H 1.09001 * 109.47012 * 90.02825 * 1 2 3 28 28 H 1.09004 * 109.47300 * 330.02971 * 1 2 3 29 29 H 1.09003 * 109.47313 * 210.02163 * 1 2 3 30 30 H 1.07997 * 125.89968 * 359.95484 * 3 2 1 31 31 H 1.09005 * 109.47173 * 65.02974 * 6 5 4 32 32 H 1.09002 * 109.47090 * 185.02326 * 6 5 4 33 33 H 0.97003 * 119.99853 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47633 * 300.00090 * 10 9 7 35 35 H 1.08994 * 109.47309 * 60.00663 * 10 9 7 36 36 H 1.09008 * 109.47061 * 299.99983 * 11 10 9 37 37 H 1.09002 * 109.47078 * 60.00113 * 11 10 9 38 38 H 1.09001 * 109.49287 * 292.71129 * 13 12 11 39 39 H 1.09006 * 109.48703 * 52.78678 * 13 12 11 40 40 H 1.08998 * 109.63184 * 294.12319 * 14 13 12 41 41 H 1.09008 * 109.62818 * 173.54157 * 14 13 12 42 42 H 0.96996 * 119.99799 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.63200 * 291.47630 * 24 15 14 44 44 H 1.09002 * 109.78951 * 170.99066 * 24 15 14 45 45 H 1.08999 * 109.49670 * 307.20963 * 25 12 11 46 46 H 1.09008 * 109.49418 * 67.29527 * 25 12 11 47 47 H 1.07995 * 126.12398 * 180.23958 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6705 0.0003 6 6 4.7746 -1.5247 0.0003 7 6 5.6582 -1.1550 -1.1631 8 8 5.3263 -0.2659 -1.9182 9 7 6.8174 -1.8125 -1.3646 10 6 7.6760 -1.4534 -2.4959 11 6 8.9191 -2.3455 -2.4959 12 7 9.7805 -1.9851 -3.6299 13 6 9.1232 -2.2895 -4.9079 14 6 9.9703 -1.7363 -6.0587 15 7 11.3390 -2.2575 -5.9238 16 6 11.9680 -2.8622 -6.9792 17 1 12.7405 -3.5952 -6.7994 18 6 11.6127 -2.5331 -8.2801 19 7 10.9350 -1.4302 -8.5182 20 14 12.0967 -3.6553 -9.6928 21 1 11.0248 -4.6581 -9.9180 22 1 12.2853 -2.8475 -10.9245 23 1 13.3646 -4.3526 -9.3591 24 6 12.0143 -2.1114 -4.6254 25 6 11.0867 -2.6499 -3.5309 26 6 2.3031 -1.0941 0.0051 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 0.8903 0.5134 29 1 -0.3634 -0.8898 0.5142 30 1 1.9951 2.1578 -0.0007 31 1 5.3227 -1.3843 0.9319 32 1 4.4728 -2.5683 -0.0899 33 1 7.0827 -2.5239 -0.7608 34 1 7.1279 -1.5947 -3.4273 35 1 7.9774 -0.4098 -2.4064 36 1 9.4675 -2.2046 -1.5644 37 1 8.6174 -3.3891 -2.5856 38 1 9.0222 -3.3693 -5.0168 39 1 8.1360 -1.8276 -4.9281 40 1 9.9867 -0.6475 -6.0109 41 1 9.5484 -2.0574 -7.0112 42 1 10.6864 -1.2004 -9.4272 43 1 12.2273 -1.0587 -4.4398 44 1 12.9453 -2.6783 -4.6279 45 1 11.5237 -2.4494 -2.5527 46 1 10.9584 -3.7248 -3.6592 47 1 1.9724 -2.1222 0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752364113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:22 Heat of formation + Delta-G solvation = 83.503001 kcal Electronic energy + Delta-G solvation = -26359.243692 eV Core-core repulsion = 22580.074384 eV Total energy + Delta-G solvation = -3779.169308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47830 -39.73445 -38.23353 -35.51505 -34.05750 -33.91990 -31.85975 -31.47835 -29.96694 -29.63426 -28.22963 -26.20108 -25.41639 -23.35163 -22.64116 -21.89237 -21.34136 -20.73239 -20.29293 -19.13605 -17.51523 -17.32884 -16.80655 -16.05031 -15.94139 -15.21091 -14.94906 -14.68807 -14.49875 -14.29485 -14.02133 -13.80964 -13.56823 -13.47645 -13.44952 -13.27292 -13.03594 -12.90469 -12.66896 -12.37116 -12.15526 -11.68916 -11.46297 -11.33836 -11.07289 -10.76765 -10.71579 -10.47094 -10.35844 -10.26885 -10.07043 -9.76858 -9.65484 -9.53928 -9.19931 -8.54929 -8.51711 -7.92598 -6.68189 -5.78338 -3.20051 1.62564 2.11042 2.34034 2.63565 2.89121 3.37242 3.43927 3.45559 4.12614 4.27825 4.45043 4.49934 4.52427 4.60338 4.79022 4.91988 5.02912 5.10911 5.20463 5.38482 5.40181 5.45824 5.46103 5.56030 5.75427 5.78469 5.87037 5.90260 5.91196 6.00761 6.07372 6.16128 6.23693 6.29973 6.44766 6.51407 6.66274 6.70129 6.90650 7.19695 7.22458 7.50738 7.51713 7.61447 7.67859 7.80242 7.96379 8.42796 9.20499 9.83838 10.42279 11.30435 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.024244 B = 0.001991 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.624596 B =14058.768602 C =14721.772905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.239 4.239 3 C 0.044 3.956 4 N -0.263 5.263 5 N -0.364 5.364 6 C 0.118 3.882 7 C 0.496 3.504 8 O -0.505 6.505 9 N -0.727 5.727 10 C 0.123 3.877 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.177 3.823 15 N -0.595 5.595 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C 0.047 3.953 26 C 0.050 3.950 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.182 0.818 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.028 0.972 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.639 -3.314 21.710 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.251 4.251 3 C -0.144 4.144 4 N -0.083 5.083 5 N -0.147 5.147 6 C -0.008 4.008 7 C 0.279 3.721 8 O -0.378 6.378 9 N -0.381 5.381 10 C -0.001 4.001 11 C -0.083 4.083 12 N -0.255 5.255 13 C -0.098 4.098 14 C 0.051 3.949 15 N -0.319 5.319 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.083 4.083 26 C -0.095 4.095 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.199 0.801 31 H 0.132 0.868 32 H 0.142 0.858 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.458 -1.816 20.962 26.108 hybrid contribution -0.567 -2.120 -0.534 2.258 sum -16.024 -3.936 20.428 26.259 Atomic orbital electron populations 1.20044 0.89286 1.01995 1.01599 1.20138 0.97069 0.91919 1.15963 1.23858 0.90014 0.99866 1.00645 1.77510 1.20947 0.88052 1.21772 1.47925 1.04304 1.04898 1.57537 1.21443 0.85563 0.94304 0.99479 1.20467 0.82056 0.82969 0.86605 1.90831 1.71987 1.29152 1.45798 1.45867 1.21636 1.39029 1.31585 1.21400 0.90107 1.00255 0.88317 1.22190 0.93713 0.96354 0.96070 1.61867 1.03224 1.58770 1.01615 1.23008 0.98000 0.98255 0.90517 1.20871 0.83500 0.95904 0.94589 1.44122 1.11426 1.68698 1.07611 1.19199 1.18811 1.15554 0.84718 0.91604 1.25043 1.00819 0.96328 0.97594 1.70032 1.42978 1.22026 1.19629 0.86274 0.78206 0.80127 0.82063 1.21523 1.21724 1.20476 1.20974 0.93363 0.97819 0.85715 1.22629 0.90040 0.95889 0.99722 1.22282 0.83778 1.00059 1.03373 0.92091 0.91889 0.92271 0.80133 0.86823 0.85821 0.76776 0.91030 0.90293 0.90825 0.94992 0.95594 0.91827 0.95417 0.89289 0.93562 0.95590 0.92527 0.91957 0.95345 0.81082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.37 36.01 0.37 -0.07 16 2 C -0.24 -2.22 6.10 -105.05 -0.64 -2.86 16 3 C 0.04 0.48 11.96 -17.36 -0.21 0.27 16 4 N -0.26 -3.57 11.64 30.63 0.36 -3.22 16 5 N -0.36 -3.89 3.40 -62.55 -0.21 -4.11 16 6 C 0.12 0.86 6.99 -5.20 -0.04 0.83 16 7 C 0.50 5.70 7.86 -10.99 -0.09 5.61 16 8 O -0.50 -8.68 15.71 5.56 0.09 -8.60 16 9 N -0.73 -6.89 5.56 -60.30 -0.34 -7.22 16 10 C 0.12 1.58 5.61 -4.04 -0.02 1.56 16 11 C 0.05 0.58 5.08 -3.82 -0.02 0.56 16 12 N -0.53 -9.10 4.63 -234.31 -1.08 -10.19 16 13 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 14 C 0.18 4.33 5.42 -3.61 -0.02 4.31 16 15 N -0.60 -15.12 3.04 -172.01 -0.52 -15.65 16 16 C -0.25 -6.99 9.63 -15.06 -0.15 -7.14 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 19 N -0.90 -26.49 11.15 55.49 0.62 -25.88 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 25 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 26 C 0.05 0.43 11.36 -17.22 -0.20 0.24 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.12 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.40 2.23 8.47 -40.82 -0.35 1.88 16 34 H 0.07 1.07 6.40 -51.93 -0.33 0.73 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.80 7.97 -51.92 -0.41 0.39 16 37 H 0.03 0.39 8.13 -51.93 -0.42 -0.04 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.41 6.12 -51.92 -0.32 2.09 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 45 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 46 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -36.83 381.96 -9.12 -45.95 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.60 Total: -1.32 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -1.15 Total: 7.71 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -1.18 Total: -66.26 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.83 -9.12 -45.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752364113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.450 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds