Wall clock time and date at job start Fri Apr 10 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30856 * 125.41835 * 2 1 4 4 C 1.33321 * 109.68310 * 179.73947 * 3 2 1 5 5 C 1.36664 * 107.78758 * 0.38113 * 4 3 2 6 6 C 1.46759 * 126.84424 * 179.89556 * 5 4 3 7 7 O 1.21679 * 120.00030 * 185.04397 * 6 5 4 8 8 N 1.34776 * 120.00082 * 5.04809 * 6 5 4 9 9 C 1.46502 * 120.00018 * 184.91376 * 8 6 5 10 10 C 1.52998 * 109.47234 * 179.97438 * 9 8 6 11 11 N 1.46894 * 109.47170 * 179.97438 * 10 9 8 12 12 C 1.46908 * 111.00005 * 170.00390 * 11 10 9 13 13 C 1.53238 * 109.34021 * 172.74635 * 12 11 10 14 14 N 1.47081 * 108.51975 * 53.82566 * 13 12 11 15 15 C 1.36941 * 120.87560 * 128.79209 * 14 13 12 16 16 H 1.07996 * 119.99858 * 210.64697 * 15 14 13 17 17 C 1.38812 * 120.00332 * 30.65565 * 15 14 13 18 18 N 1.31619 * 119.99531 * 10.01877 * 17 15 14 19 19 Si 1.86799 * 120.00453 * 190.02349 * 17 15 14 20 20 H 1.48503 * 109.47112 * 89.99274 * 19 17 15 21 21 H 1.48491 * 109.47380 * 209.99754 * 19 17 15 22 22 H 1.48504 * 109.46780 * 329.99979 * 19 17 15 23 23 C 1.47079 * 118.24212 * 308.81781 * 14 13 12 24 24 C 1.46893 * 111.00166 * 45.70022 * 11 10 9 25 25 N 1.34498 * 125.41681 * 179.97438 * 2 1 3 26 26 C 1.46499 * 126.47183 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47050 * 270.02504 * 1 2 3 28 28 H 1.08993 * 109.46853 * 30.02778 * 1 2 3 29 29 H 1.08996 * 109.46861 * 150.02789 * 1 2 3 30 30 H 1.07995 * 126.10215 * 180.26577 * 4 3 2 31 31 H 0.97001 * 120.00129 * 4.90547 * 8 6 5 32 32 H 1.09002 * 109.47125 * 59.99644 * 9 8 6 33 33 H 1.08997 * 109.47101 * 300.00169 * 9 8 6 34 34 H 1.09002 * 109.46924 * 60.00048 * 10 9 8 35 35 H 1.08997 * 109.47645 * 300.00363 * 10 9 8 36 36 H 1.08999 * 109.48994 * 52.79052 * 12 11 10 37 37 H 1.08997 * 109.49159 * 292.70545 * 12 11 10 38 38 H 1.09001 * 109.62856 * 173.53795 * 13 12 11 39 39 H 1.08998 * 109.62830 * 293.92381 * 13 12 11 40 40 H 0.97008 * 119.99790 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.62638 * 170.89558 * 23 14 13 42 42 H 1.09000 * 109.62403 * 291.47134 * 23 14 13 43 43 H 1.09002 * 109.49107 * 67.29489 * 24 11 10 44 44 H 1.08996 * 109.51616 * 307.23065 * 24 11 10 45 45 H 1.09006 * 109.46912 * 264.64065 * 26 25 2 46 46 H 1.09002 * 109.47553 * 24.64294 * 26 25 2 47 47 H 1.09005 * 109.47042 * 144.64720 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0057 5 6 3.5976 -0.6609 0.0008 6 6 4.8029 -1.4983 0.0022 7 8 4.7039 -2.7071 -0.0953 8 7 6.0193 -0.9284 0.1115 9 6 7.2263 -1.7518 0.0048 10 6 8.4637 -0.8660 0.1628 11 7 9.6739 -1.6918 0.0564 12 6 10.8769 -0.8535 -0.0345 13 6 12.1223 -1.7434 0.0389 14 7 12.0120 -2.7871 -0.9915 15 6 13.0349 -3.0151 -1.8730 16 1 12.8197 -3.3727 -2.8691 17 6 14.3484 -2.7868 -1.4863 18 7 14.6297 -2.5433 -0.2238 19 14 15.7165 -2.8250 -2.7576 20 1 15.9072 -1.4642 -3.3207 21 1 16.9769 -3.2760 -2.1150 22 1 15.3528 -3.7653 -3.8480 23 6 10.7740 -3.5790 -1.0505 24 6 9.5818 -2.6168 -1.0809 25 7 2.2865 -1.0961 0.0005 26 6 1.8311 -2.4885 0.0006 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5142 29 1 -0.3633 -0.8902 -0.5134 30 1 4.3978 1.3721 0.0111 31 1 6.0957 0.0271 0.2606 32 1 7.2497 -2.2376 -0.9707 33 1 7.2193 -2.5099 0.7880 34 1 8.4405 -0.3800 1.1382 35 1 8.4705 -0.1082 -0.6206 36 1 10.8884 -0.1430 0.7921 37 1 10.8722 -0.3119 -0.9803 38 1 13.0131 -1.1422 -0.1426 39 1 12.1858 -2.2036 1.0250 40 1 15.5476 -2.3834 0.0464 41 1 10.7736 -4.1913 -1.9522 42 1 10.7062 -4.2184 -0.1703 43 1 9.5951 -2.0506 -2.0122 44 1 8.6540 -3.1850 -1.0140 45 1 1.8090 -2.8635 1.0239 46 1 0.8305 -2.5436 -0.4283 47 1 2.5150 -3.0945 -0.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752372296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:36 Heat of formation + Delta-G solvation = 37.501435 kcal Electronic energy + Delta-G solvation = -26696.644225 eV Core-core repulsion = 22915.480140 eV Total energy + Delta-G solvation = -3781.164085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.31825 -40.60460 -39.68159 -36.94117 -35.65549 -34.93044 -33.37201 -32.87296 -31.80352 -30.38460 -28.76894 -27.93225 -27.16520 -25.25713 -24.30483 -23.84656 -22.58219 -21.60574 -20.91088 -20.69770 -18.87228 -18.70178 -17.49366 -17.29642 -16.95473 -16.85923 -16.50803 -16.03239 -15.78150 -15.46983 -15.32398 -15.08901 -15.00092 -14.80458 -14.67913 -14.22059 -14.14632 -14.04073 -13.76774 -13.30680 -13.15297 -13.08689 -12.99467 -12.94988 -12.62902 -12.44536 -12.29927 -12.02343 -11.91341 -11.59613 -11.52344 -11.40978 -11.00089 -10.78512 -10.59841 -10.26467 -9.51086 -9.28355 -8.62588 -7.87155 -5.38159 0.20626 1.38879 1.46859 1.47168 1.56762 1.71347 2.17218 2.23350 2.49868 3.06673 3.29389 3.38813 3.62288 3.69104 3.78153 3.86560 3.93155 4.05281 4.28161 4.29334 4.33709 4.35134 4.43456 4.53250 4.57187 4.62263 4.69489 4.70719 4.73812 4.85313 4.89257 4.93977 5.04177 5.04276 5.14829 5.18865 5.26149 5.38114 5.44494 5.60885 5.72095 6.03091 6.12954 6.21203 6.37093 6.40030 6.83948 7.05008 7.14697 7.83110 8.38798 9.18984 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.038342 B = 0.001994 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.098325 B =14038.357948 C =14309.297219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.230 3.770 3 N -0.527 5.527 4 C 0.045 3.955 5 C -0.115 4.115 6 C 0.595 3.405 7 O -0.580 6.580 8 N -0.701 5.701 9 C 0.129 3.871 10 C 0.051 3.949 11 N -0.539 5.539 12 C 0.053 3.947 13 C 0.184 3.816 14 N -0.615 5.615 15 C -0.265 4.265 16 H 0.065 0.935 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.270 1.270 23 C 0.143 3.857 24 C 0.048 3.952 25 N -0.431 5.431 26 C 0.064 3.936 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.203 0.797 31 H 0.417 0.583 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.024 0.976 38 H 0.058 0.942 39 H -0.002 1.002 40 H 0.251 0.749 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.026 0.974 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.123 0.877 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.372 6.783 1.435 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.032 4.032 3 N -0.247 5.247 4 C -0.110 4.110 5 C -0.231 4.231 6 C 0.382 3.618 7 O -0.461 6.461 8 N -0.353 5.353 9 C 0.006 3.994 10 C -0.077 4.077 11 N -0.265 5.265 12 C -0.076 4.076 13 C 0.058 3.942 14 N -0.339 5.339 15 C -0.395 4.395 16 H 0.083 0.917 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.800 3.200 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.195 1.195 23 C 0.017 3.983 24 C -0.081 4.081 25 N -0.112 5.112 26 C -0.077 4.077 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.220 0.780 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.042 0.958 38 H 0.077 0.923 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.142 0.858 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.571 6.247 1.829 30.279 hybrid contribution 1.713 -0.188 -1.021 2.003 sum -27.858 6.059 0.808 28.521 Atomic orbital electron populations 1.20519 0.81310 1.05825 1.05344 1.24303 0.97569 0.80548 1.00815 1.70160 1.02720 1.29217 1.22583 1.23100 0.95875 0.91209 1.00806 1.20665 0.85607 0.95141 1.21712 1.16911 0.82714 0.86205 0.75942 1.90789 1.87299 1.15539 1.52483 1.45380 1.04100 1.12903 1.72907 1.21356 0.82314 0.93648 1.02108 1.22251 0.87808 0.94610 1.02981 1.61922 1.02080 1.19594 1.42903 1.22605 0.90474 0.94982 0.99585 1.20640 0.94481 0.89327 0.89710 1.44357 1.14911 1.37753 1.36883 1.19511 0.86110 1.40880 0.93025 0.91748 1.25942 0.99679 1.01385 0.97539 1.70142 1.18503 1.53629 1.15920 0.85204 0.78450 0.77907 0.78469 1.20990 1.22006 1.19464 1.21134 0.85910 0.92787 0.98463 1.22592 0.99107 0.95316 0.91106 1.45320 1.04821 1.09407 1.51604 1.22420 1.03089 0.77251 1.04926 0.88131 0.88211 0.88156 0.78038 0.74533 0.91662 0.91433 0.88482 0.93278 0.89476 0.95823 0.92321 0.98340 0.94005 0.92359 0.96709 0.95593 0.88905 0.89563 0.85825 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.17 71.24 0.72 0.26 16 2 C 0.23 3.73 7.88 138.20 1.09 4.82 16 3 N -0.53 -10.80 11.20 -187.39 -2.10 -12.90 16 4 C 0.05 0.83 11.36 84.10 0.96 1.79 16 5 C -0.11 -2.39 6.91 40.01 0.28 -2.12 16 6 C 0.59 14.03 7.78 86.47 0.67 14.70 16 7 O -0.58 -17.47 14.99 -4.28 -0.06 -17.53 16 8 N -0.70 -13.28 5.53 -467.01 -2.58 -15.86 16 9 C 0.13 2.95 4.93 86.38 0.43 3.38 16 10 C 0.05 1.18 5.38 86.30 0.46 1.65 16 11 N -0.54 -17.70 4.78 -895.29 -4.28 -21.98 16 12 C 0.05 1.95 5.58 86.38 0.48 2.44 16 13 C 0.18 9.06 5.36 86.35 0.46 9.52 16 14 N -0.61 -31.81 3.03 -698.13 -2.11 -33.93 16 15 C -0.27 -14.85 9.62 84.03 0.81 -14.04 16 16 H 0.06 3.52 7.85 -2.91 -0.02 3.50 16 17 C -0.05 -2.83 5.08 84.86 0.43 -2.40 16 18 N -0.94 -55.81 11.03 21.65 0.24 -55.57 16 19 Si 0.97 45.18 29.57 68.60 2.03 47.21 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 C 0.14 6.17 6.69 86.35 0.58 6.75 16 24 C 0.05 1.65 5.04 86.38 0.44 2.09 16 25 N -0.43 -7.68 3.17 -524.92 -1.67 -9.35 16 26 C 0.06 0.80 10.44 127.77 1.33 2.14 16 27 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.17 6.95 -2.39 -0.02 0.15 16 30 H 0.20 2.36 7.50 -2.91 -0.02 2.34 16 31 H 0.42 5.28 7.46 -92.71 -0.69 4.59 16 32 H 0.07 1.64 6.18 -2.39 -0.01 1.63 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 37 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 3.22 6.20 -2.39 -0.01 3.21 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 41 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 42 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 2.76 5.73 -2.39 -0.01 2.75 16 45 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.12 0.58 6.86 -2.39 -0.02 0.56 16 47 H 0.08 1.43 6.69 -2.38 -0.02 1.41 16 Total: -1.00 -76.42 374.00 -1.11 -77.53 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.29 Total: 11.39 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: 9.14 Total: 30.98 kcal Atomic # 7 Polarization: -137.08 SS G_CDS: -12.50 Total: -149.59 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.06 Total: -17.53 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.42 -1.11 -77.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752372296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.034 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds