Wall clock time and date at job start Fri Apr 10 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99791 * 2 1 4 4 O 1.21284 * 119.99925 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99978 * 0.02562 * 3 2 1 6 6 H 1.08997 * 115.55185 * 34.32551 * 5 3 2 7 7 C 1.53008 * 117.49598 * 248.61576 * 5 3 2 8 8 C 1.53000 * 117.49686 * 179.97438 * 5 3 2 9 9 C 1.52995 * 138.59146 * 336.59708 * 8 5 3 10 10 C 1.52995 * 138.58734 * 238.37734 * 8 5 3 11 11 C 1.46500 * 120.00344 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.35549 * 177.86014 * 11 2 1 13 13 C 1.54593 * 110.30964 * 55.71463 * 11 2 1 14 14 C 1.54933 * 102.92591 * 219.13023 * 13 11 2 15 15 N 1.48538 * 103.22579 * 37.41127 * 14 13 11 16 16 C 1.46897 * 111.00123 * 200.28130 * 15 14 13 17 17 C 1.50702 * 109.47386 * 287.40169 * 16 15 14 18 18 O 1.21296 * 119.99662 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00283 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99948 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99890 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99651 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00185 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47385 * 90.00248 * 24 22 20 26 26 H 1.48503 * 109.47404 * 210.00434 * 24 22 20 27 27 H 1.48504 * 109.47058 * 329.99973 * 24 22 20 28 28 C 1.47899 * 105.82096 * 320.79703 * 15 14 13 29 29 H 1.08994 * 109.47128 * 269.99838 * 1 2 3 30 30 H 1.09001 * 109.47009 * 29.99851 * 1 2 3 31 31 H 1.09001 * 109.46596 * 149.99479 * 1 2 3 32 32 H 1.08994 * 117.50049 * 0.02562 * 7 5 3 33 33 H 1.09002 * 117.49356 * 145.02658 * 7 5 3 34 34 H 1.09002 * 117.49460 * 336.59211 * 9 8 5 35 35 H 1.08993 * 117.50012 * 121.61720 * 9 8 5 36 36 H 1.08999 * 117.49535 * 238.38161 * 10 8 5 37 37 H 1.08993 * 117.49794 * 23.40533 * 10 8 5 38 38 H 1.09007 * 110.72450 * 337.49014 * 13 11 2 39 39 H 1.09004 * 110.72461 * 100.76937 * 13 11 2 40 40 H 1.09007 * 110.66620 * 278.98326 * 14 13 11 41 41 H 1.08993 * 110.81619 * 155.91514 * 14 13 11 42 42 H 1.09008 * 109.47211 * 47.40082 * 16 15 14 43 43 H 1.09000 * 109.47208 * 167.39693 * 16 15 14 44 44 H 0.96999 * 119.99496 * 359.97438 * 19 17 16 45 45 H 0.97002 * 119.99658 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.91646 * 265.97786 * 28 15 14 47 47 H 1.09001 * 110.08341 * 144.77463 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.4471 2.4732 0.5555 7 6 1.4602 3.3318 -1.2631 8 6 2.2074 3.7627 0.0012 9 6 3.6072 4.2313 0.4033 10 6 2.3764 5.0151 0.8635 11 6 2.1976 -1.2687 -0.0006 12 1 3.2715 -1.0863 -0.0386 13 6 1.7586 -2.1412 -1.1989 14 6 1.7260 -3.5678 -0.5953 15 7 1.2065 -3.3439 0.7781 16 6 1.5447 -4.4698 1.6590 17 6 0.6967 -5.6622 1.2983 18 8 -0.1104 -5.5818 0.3964 19 7 0.8343 -6.8176 1.9784 20 6 0.0625 -7.9022 1.6506 21 1 -0.6561 -7.8306 0.8475 22 6 0.2048 -9.0934 2.3515 23 7 1.0789 -9.1803 3.3289 24 14 -0.8473 -10.5710 1.9053 25 1 -0.1500 -11.3824 0.8754 26 1 -1.0766 -11.3993 3.1163 27 1 -2.1519 -10.1060 1.3694 28 6 1.8394 -2.0932 1.2498 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3632 -0.8900 -0.5139 32 1 2.0540 2.9531 -2.0949 33 1 0.5710 3.8983 -1.5397 34 1 4.1387 3.6439 1.1521 35 1 4.2294 4.6803 -0.3708 36 1 2.1889 5.9798 0.3920 37 1 2.0982 4.9435 1.9149 38 1 0.7686 -1.8473 -1.5479 39 1 2.4873 -2.0810 -2.0073 40 1 2.7285 -3.9946 -0.5625 41 1 1.0532 -4.2123 -1.1608 42 1 2.5979 -4.7228 1.5372 43 1 1.3558 -4.1897 2.6953 44 1 1.4795 -6.8817 2.6999 45 1 1.1779 -10.0119 3.8184 46 1 2.7433 -2.3241 1.8137 47 1 1.1438 -1.5347 1.8762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753445140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:57 Heat of formation + Delta-G solvation = 10.315227 kcal Electronic energy + Delta-G solvation = -26850.604337 eV Core-core repulsion = 23035.968618 eV Total energy + Delta-G solvation = -3814.635719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58107 -39.13492 -37.99450 -37.21531 -35.21476 -33.86029 -32.97144 -31.45729 -30.97262 -28.71962 -27.14268 -26.52547 -24.59307 -23.86838 -22.69399 -21.22595 -21.09307 -19.74586 -19.18560 -18.71013 -17.88624 -17.54041 -16.54525 -16.01466 -15.61541 -15.35883 -15.25633 -15.01995 -14.72828 -14.51762 -14.29360 -13.79207 -13.68683 -13.32690 -12.99026 -12.74506 -12.49710 -12.36005 -12.23260 -12.05293 -11.80452 -11.79394 -11.71923 -11.52175 -11.43328 -11.12407 -10.89714 -10.65035 -10.54023 -10.41766 -10.38557 -10.30993 -10.20870 -9.82663 -9.48330 -8.79485 -8.47268 -7.99574 -7.92788 -6.40480 -3.81240 2.26445 2.68930 3.18228 3.26754 3.32557 3.38700 3.44649 3.92183 3.93950 4.03580 4.25620 4.32102 4.44988 4.64980 4.65460 4.78445 4.99637 5.02519 5.11044 5.18387 5.22724 5.27360 5.30626 5.31883 5.33213 5.34912 5.38846 5.39141 5.58222 5.63191 5.64161 5.71287 5.80280 5.82842 5.86594 5.87572 5.96472 6.11902 6.29021 6.37436 6.45442 7.10363 7.19115 7.26711 7.56124 8.02155 8.07476 8.63368 9.19488 9.56133 10.08107 10.77364 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.039315 B = 0.002062 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.032697 B =13576.085664 C =13753.910194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.602 5.602 3 C 0.542 3.458 4 O -0.538 6.538 5 C -0.140 4.140 6 H 0.125 0.875 7 C -0.100 4.100 8 C -0.203 4.203 9 C -0.113 4.113 10 C -0.130 4.130 11 C 0.132 3.868 12 H 0.105 0.895 13 C -0.133 4.133 14 C 0.042 3.958 15 N -0.489 5.489 16 C 0.036 3.964 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.025 3.975 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.049 0.951 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 24.879 -5.257 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C 0.330 3.670 4 O -0.415 6.415 5 C -0.161 4.161 6 H 0.143 0.857 7 C -0.137 4.137 8 C -0.204 4.204 9 C -0.150 4.150 10 C -0.166 4.166 11 C 0.028 3.972 12 H 0.123 0.877 13 C -0.172 4.172 14 C -0.086 4.086 15 N -0.213 5.213 16 C -0.096 4.096 17 C 0.232 3.768 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.104 4.104 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.050 24.786 -5.719 25.520 hybrid contribution 0.643 -1.126 0.548 1.408 sum 2.693 23.660 -5.172 24.368 Atomic orbital electron populations 1.21846 0.78969 1.03626 1.02387 1.47804 1.07317 1.05228 1.73044 1.19725 0.87360 0.84231 0.75680 1.90677 1.13814 1.87201 1.49783 1.21998 1.00761 0.88797 1.04543 0.85708 1.22660 1.01371 0.99528 0.90110 1.21180 1.01567 0.95934 1.01679 1.22594 0.89123 1.00815 1.02465 1.22766 1.01599 0.93366 0.98915 1.21975 0.97586 0.82498 0.95163 0.87718 1.22910 1.02477 0.94857 0.96917 1.23261 0.98912 0.96109 0.90343 1.64481 1.54035 1.00928 1.01849 1.22074 0.97820 0.91865 0.97799 1.19687 0.87211 0.83955 0.85995 1.90499 1.39201 1.83617 1.32792 1.41865 1.36446 1.09775 1.32218 1.19685 1.17354 0.88642 1.17024 0.87938 1.25259 0.97613 0.99208 0.95967 1.69615 1.35070 1.27980 1.21734 0.85861 0.80055 0.80619 0.77760 1.20463 1.20954 1.19429 1.23243 0.98374 0.92141 0.96672 0.92307 0.91090 0.89642 0.88099 0.87546 0.88194 0.88558 0.88334 0.88517 0.89921 0.90798 0.94080 0.88053 0.93126 0.89415 0.77532 0.91913 0.93246 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.04 59.85 0.54 1.20 16 2 N -0.60 -6.70 2.77 -172.38 -0.48 -7.18 16 3 C 0.54 6.53 7.46 -10.98 -0.08 6.45 16 4 O -0.54 -8.28 15.60 5.55 0.09 -8.19 16 5 C -0.14 -1.27 4.80 -91.77 -0.44 -1.71 16 6 H 0.13 0.90 7.26 -51.93 -0.38 0.53 16 7 C -0.10 -0.76 10.24 -26.70 -0.27 -1.03 16 8 C -0.20 -1.82 5.06 -154.49 -0.78 -2.60 16 9 C -0.11 -1.00 10.16 -26.73 -0.27 -1.27 16 10 C -0.13 -0.91 10.53 -26.73 -0.28 -1.19 16 11 C 0.13 1.64 3.39 -66.57 -0.23 1.41 16 12 H 0.10 1.42 6.97 -51.93 -0.36 1.06 16 13 C -0.13 -1.64 6.57 -24.87 -0.16 -1.81 16 14 C 0.04 0.64 5.94 -1.90 -0.01 0.63 16 15 N -0.49 -8.01 4.90 -231.89 -1.14 -9.15 16 16 C 0.04 0.65 5.19 -4.98 -0.03 0.62 16 17 C 0.45 10.50 7.61 -10.98 -0.08 10.42 16 18 O -0.58 -15.41 14.64 5.54 0.08 -15.33 16 19 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 20 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 24 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.02 0.33 6.15 -2.75 -0.02 0.32 16 29 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 30 H 0.07 0.47 6.64 -51.93 -0.34 0.12 16 31 H 0.08 0.84 6.20 -51.93 -0.32 0.52 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.99 6.10 -51.92 -0.32 0.68 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 41 H 0.10 1.83 7.10 -51.93 -0.37 1.47 16 42 H 0.05 0.84 7.83 -51.92 -0.41 0.43 16 43 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 44 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.05 0.64 7.77 -51.93 -0.40 0.24 16 47 H 0.08 1.08 7.33 -51.93 -0.38 0.70 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -32.89 381.87 -9.72 -42.61 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.31 Total: 10.30 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -2.36 Total: 3.47 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.95 Total: -54.67 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: 0.17 Total: -23.52 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.89 -9.72 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753445140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.925 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds