Wall clock time and date at job start Fri Apr 10 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99791 * 2 1 4 4 O 1.21284 * 119.99925 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99978 * 0.02562 * 3 2 1 6 6 H 1.08997 * 115.55185 * 34.32551 * 5 3 2 7 7 C 1.53008 * 117.49598 * 248.61576 * 5 3 2 8 8 C 1.53000 * 117.49686 * 179.97438 * 5 3 2 9 9 C 1.52995 * 138.59146 * 336.59708 * 8 5 3 10 10 C 1.52995 * 138.58734 * 238.37734 * 8 5 3 11 11 C 1.46500 * 120.00344 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.35549 * 177.86014 * 11 2 1 13 13 C 1.54593 * 110.30964 * 55.71463 * 11 2 1 14 14 C 1.54933 * 102.92591 * 219.13023 * 13 11 2 15 15 N 1.48538 * 103.22579 * 37.41127 * 14 13 11 16 16 C 1.46897 * 111.00123 * 200.28130 * 15 14 13 17 17 C 1.50702 * 109.47386 * 287.40169 * 16 15 14 18 18 O 1.21296 * 119.99662 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00283 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99948 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99890 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99651 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00185 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47385 * 90.00248 * 24 22 20 26 26 H 1.48503 * 109.47404 * 210.00434 * 24 22 20 27 27 H 1.48504 * 109.47058 * 329.99973 * 24 22 20 28 28 C 1.47899 * 105.82096 * 320.79703 * 15 14 13 29 29 H 1.08994 * 109.47128 * 269.99838 * 1 2 3 30 30 H 1.09001 * 109.47009 * 29.99851 * 1 2 3 31 31 H 1.09001 * 109.46596 * 149.99479 * 1 2 3 32 32 H 1.08994 * 117.50049 * 0.02562 * 7 5 3 33 33 H 1.09002 * 117.49356 * 145.02658 * 7 5 3 34 34 H 1.09002 * 117.49460 * 336.59211 * 9 8 5 35 35 H 1.08993 * 117.50012 * 121.61720 * 9 8 5 36 36 H 1.08999 * 117.49535 * 238.38161 * 10 8 5 37 37 H 1.08993 * 117.49794 * 23.40533 * 10 8 5 38 38 H 1.09007 * 110.72450 * 337.49014 * 13 11 2 39 39 H 1.09004 * 110.72461 * 100.76937 * 13 11 2 40 40 H 1.09007 * 110.66620 * 278.98326 * 14 13 11 41 41 H 1.08993 * 110.81619 * 155.91514 * 14 13 11 42 42 H 1.09008 * 109.47211 * 47.40082 * 16 15 14 43 43 H 1.09000 * 109.47208 * 167.39693 * 16 15 14 44 44 H 0.96999 * 119.99496 * 359.97438 * 19 17 16 45 45 H 0.97002 * 119.99658 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.91646 * 265.97786 * 28 15 14 47 47 H 1.09001 * 110.08341 * 144.77463 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.4471 2.4732 0.5555 7 6 1.4602 3.3318 -1.2631 8 6 2.2074 3.7627 0.0012 9 6 3.6072 4.2313 0.4033 10 6 2.3764 5.0151 0.8635 11 6 2.1976 -1.2687 -0.0006 12 1 3.2715 -1.0863 -0.0386 13 6 1.7586 -2.1412 -1.1989 14 6 1.7260 -3.5678 -0.5953 15 7 1.2065 -3.3439 0.7781 16 6 1.5447 -4.4698 1.6590 17 6 0.6967 -5.6622 1.2983 18 8 -0.1104 -5.5818 0.3964 19 7 0.8343 -6.8176 1.9784 20 6 0.0625 -7.9022 1.6506 21 1 -0.6561 -7.8306 0.8475 22 6 0.2048 -9.0934 2.3515 23 7 1.0789 -9.1803 3.3289 24 14 -0.8473 -10.5710 1.9053 25 1 -0.1500 -11.3824 0.8754 26 1 -1.0766 -11.3993 3.1163 27 1 -2.1519 -10.1060 1.3694 28 6 1.8394 -2.0932 1.2498 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3632 -0.8900 -0.5139 32 1 2.0540 2.9531 -2.0949 33 1 0.5710 3.8983 -1.5397 34 1 4.1387 3.6439 1.1521 35 1 4.2294 4.6803 -0.3708 36 1 2.1889 5.9798 0.3920 37 1 2.0982 4.9435 1.9149 38 1 0.7686 -1.8473 -1.5479 39 1 2.4873 -2.0810 -2.0073 40 1 2.7285 -3.9946 -0.5625 41 1 1.0532 -4.2123 -1.1608 42 1 2.5979 -4.7228 1.5372 43 1 1.3558 -4.1897 2.6953 44 1 1.4795 -6.8817 2.6999 45 1 1.1779 -10.0119 3.8184 46 1 2.7433 -2.3241 1.8137 47 1 1.1438 -1.5347 1.8762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753445140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:56 Heat of formation + Delta-G solvation = -11.712041 kcal Electronic energy + Delta-G solvation = -26851.559511 eV Core-core repulsion = 23035.968618 eV Total energy + Delta-G solvation = -3815.590893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.52184 -40.46029 -39.36576 -38.22261 -36.33227 -35.81234 -33.68459 -33.28849 -32.35326 -29.81744 -28.44138 -27.61540 -26.18384 -24.93311 -23.27824 -22.52130 -21.93600 -21.00634 -20.55960 -19.88599 -19.50001 -18.47786 -17.80115 -17.38970 -16.87739 -16.41373 -16.31755 -16.07271 -15.90242 -15.77940 -15.59368 -15.43809 -14.90272 -14.55911 -14.16222 -13.98762 -13.61757 -13.47769 -13.30392 -13.27091 -13.03082 -12.93833 -12.83300 -12.65290 -12.59471 -12.40823 -12.35499 -12.23324 -12.11822 -11.75377 -11.47254 -11.17801 -11.05111 -10.92655 -10.70925 -10.32886 -10.00174 -9.69521 -9.36554 -8.45864 -5.94447 1.38137 1.40735 1.41749 1.54543 1.84326 2.06216 2.28556 2.73370 2.75626 2.82716 3.20581 3.32693 3.36705 3.50235 3.65631 3.72835 3.84733 4.03835 4.11280 4.20502 4.23491 4.31484 4.34089 4.41980 4.49550 4.50376 4.59801 4.62647 4.68385 4.75520 4.76168 4.78258 4.81855 4.92536 4.95604 5.01767 5.02630 5.04071 5.12252 5.27578 5.41480 5.53027 5.81413 5.88296 6.06398 6.37538 6.61248 7.12154 7.13705 7.57253 8.12908 8.71638 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.039315 B = 0.002062 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.032697 B =13576.085664 C =13753.910194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.599 5.599 3 C 0.537 3.463 4 O -0.579 6.579 5 C -0.146 4.146 6 H 0.148 0.852 7 C -0.084 4.084 8 C -0.228 4.228 9 C -0.133 4.133 10 C -0.106 4.106 11 C 0.137 3.863 12 H 0.094 0.906 13 C -0.120 4.120 14 C 0.041 3.959 15 N -0.504 5.504 16 C 0.048 3.952 17 C 0.445 3.555 18 O -0.612 6.612 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.080 0.920 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.031 3.969 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.107 0.893 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.056 0.944 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 26.428 -5.190 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.331 5.331 3 C 0.327 3.673 4 O -0.459 6.459 5 C -0.166 4.166 6 H 0.165 0.835 7 C -0.121 4.121 8 C -0.228 4.228 9 C -0.170 4.170 10 C -0.143 4.143 11 C 0.033 3.967 12 H 0.112 0.888 13 C -0.158 4.158 14 C -0.087 4.087 15 N -0.228 5.228 16 C -0.084 4.084 17 C 0.232 3.768 18 O -0.498 6.498 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.097 4.097 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.154 0.846 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.250 26.350 -5.640 26.976 hybrid contribution 0.915 -1.571 0.515 1.890 sum 2.165 24.778 -5.125 25.395 Atomic orbital electron populations 1.21999 0.77345 1.04505 1.03093 1.47863 1.08227 1.04533 1.72444 1.20304 0.87074 0.85282 0.74676 1.90659 1.15705 1.87815 1.51733 1.22046 1.01236 0.87118 1.06218 0.83466 1.22759 1.01865 0.98456 0.89017 1.21461 1.01564 0.96693 1.03110 1.22587 0.89768 1.01958 1.02694 1.22845 0.99019 0.93349 0.99087 1.21778 0.97233 0.83132 0.94602 0.88777 1.22812 1.03212 0.92694 0.97093 1.23170 0.98017 0.97490 0.89990 1.64416 1.55081 1.01347 1.02005 1.21937 0.97347 0.90088 0.99018 1.20656 0.86778 0.84725 0.84652 1.90474 1.40811 1.84393 1.34127 1.41938 1.36609 1.10067 1.32776 1.19653 1.18374 0.90358 1.17579 0.90213 1.26051 0.98558 1.01310 0.95576 1.69679 1.35689 1.28897 1.22047 0.84921 0.78194 0.77230 0.77946 1.19703 1.19631 1.19694 1.23221 0.98596 0.90751 0.97158 0.91666 0.88331 0.90654 0.89105 0.84635 0.90213 0.88132 0.86322 0.87942 0.89427 0.89524 0.93818 0.91212 0.91347 0.87446 0.77132 0.91378 0.92529 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 9.04 127.77 1.16 2.27 16 2 N -0.60 -12.48 2.77 -817.68 -2.27 -14.75 16 3 C 0.54 12.35 7.46 87.66 0.65 13.01 16 4 O -0.58 -17.87 15.60 -3.04 -0.05 -17.92 16 5 C -0.15 -2.31 4.80 -11.54 -0.06 -2.37 16 6 H 0.15 1.63 7.26 -2.39 -0.02 1.61 16 7 C -0.08 -1.07 10.24 30.61 0.31 -0.75 16 8 C -0.23 -3.68 5.06 -52.17 -0.26 -3.94 16 9 C -0.13 -2.29 10.16 30.59 0.31 -1.98 16 10 C -0.11 -1.26 10.53 30.59 0.32 -0.94 16 11 C 0.14 3.29 3.39 45.87 0.16 3.44 16 12 H 0.09 2.51 6.97 -2.39 -0.02 2.50 16 13 C -0.12 -2.86 6.57 31.80 0.21 -2.66 16 14 C 0.04 1.28 5.94 86.65 0.51 1.79 16 15 N -0.50 -16.22 4.90 -887.55 -4.35 -20.57 16 16 C 0.05 1.68 5.19 85.56 0.44 2.12 16 17 C 0.44 21.24 7.61 87.66 0.67 21.90 16 18 O -0.61 -33.59 14.64 -3.08 -0.05 -33.64 16 19 N -0.58 -29.77 5.29 -306.98 -1.62 -31.40 16 20 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 23 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 24 Si 0.99 43.11 29.55 68.60 2.03 45.13 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 C 0.03 0.80 6.15 86.45 0.53 1.33 16 29 H 0.06 0.95 7.95 -2.39 -0.02 0.93 16 30 H 0.10 0.98 6.64 -2.39 -0.02 0.97 16 31 H 0.07 1.36 6.20 -2.39 -0.01 1.34 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 2.02 6.10 -2.38 -0.01 2.01 16 39 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 40 H 0.04 1.31 7.81 -2.38 -0.02 1.29 16 41 H 0.07 2.61 7.10 -2.39 -0.02 2.60 16 42 H 0.07 2.19 7.83 -2.38 -0.02 2.17 16 43 H 0.11 3.37 8.08 -2.39 -0.02 3.35 16 44 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 45 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 46 H 0.06 1.38 7.77 -2.39 -0.02 1.36 16 47 H 0.09 2.16 7.33 -2.39 -0.02 2.15 16 Total: -1.00 -72.49 381.87 0.47 -72.02 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.25 Total: 36.07 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.24 Total: 14.89 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -7.96 Total: -116.55 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.09 Total: -51.56 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -72.49 0.47 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753445140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.307 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds