Wall clock time and date at job start Fri Apr 10 2020 18:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 120.00059 * 2 1 4 4 O 1.21280 * 119.99960 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99875 * 0.02562 * 3 2 1 6 6 H 1.09004 * 115.56211 * 34.30838 * 5 3 2 7 7 C 1.53004 * 117.49892 * 248.61759 * 5 3 2 8 8 C 1.52989 * 59.99817 * 252.51311 * 7 5 3 9 9 C 1.52993 * 138.58986 * 130.89726 * 8 7 5 10 10 C 1.53002 * 60.03097 * 130.87830 * 9 8 7 11 11 C 1.46497 * 120.00257 * 179.97438 * 2 1 3 12 12 H 1.09002 * 110.27668 * 182.08708 * 11 2 1 13 13 C 1.54593 * 110.31075 * 304.28631 * 11 2 1 14 14 C 1.54944 * 102.92246 * 96.95641 * 13 11 2 15 15 N 1.48534 * 103.22653 * 37.41331 * 14 13 11 16 16 C 1.46901 * 110.99983 * 200.27927 * 15 14 13 17 17 C 1.50697 * 109.46890 * 287.40013 * 16 15 14 18 18 O 1.21285 * 120.00342 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99508 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99654 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00111 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99603 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99551 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00162 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47132 * 90.00055 * 24 22 20 26 26 H 1.48502 * 109.46909 * 209.99900 * 24 22 20 27 27 H 1.48503 * 109.47168 * 329.99740 * 24 22 20 28 28 C 1.47898 * 105.82040 * 320.79519 * 15 14 13 29 29 H 1.09001 * 109.46877 * 90.00110 * 1 2 3 30 30 H 1.08997 * 109.47275 * 209.99911 * 1 2 3 31 31 H 1.08996 * 109.47202 * 330.00005 * 1 2 3 32 32 H 1.08998 * 117.50021 * 145.01709 * 7 5 3 33 33 H 1.09005 * 117.51427 * 359.97438 * 7 5 3 34 34 H 1.09002 * 117.49972 * 238.37931 * 9 8 7 35 35 H 1.09002 * 117.49720 * 23.37816 * 9 8 7 36 36 H 1.09000 * 117.49996 * 107.50719 * 10 9 8 37 37 H 1.09007 * 117.49696 * 252.52389 * 10 9 8 38 38 H 1.08999 * 110.72953 * 215.31227 * 13 11 2 39 39 H 1.09001 * 110.72374 * 338.60340 * 13 11 2 40 40 H 1.09005 * 110.66515 * 278.98135 * 14 13 11 41 41 H 1.08994 * 110.66411 * 155.85237 * 14 13 11 42 42 H 1.09004 * 109.46778 * 47.39924 * 16 15 14 43 43 H 1.08995 * 109.46869 * 167.39687 * 16 15 14 44 44 H 0.97001 * 120.00442 * 359.97438 * 19 17 16 45 45 H 0.96997 * 119.99394 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.91830 * 265.97740 * 28 15 14 47 47 H 1.09007 * 109.91797 * 144.68362 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.4470 2.4734 0.5552 7 6 1.4602 3.3318 -1.2630 8 6 2.2074 3.7626 0.0005 9 6 3.6074 4.2312 0.4021 10 6 2.3773 5.0159 0.8628 11 6 2.1975 -1.2687 0.0006 12 1 3.2713 -1.0849 0.0377 13 6 1.7586 -2.1412 1.1988 14 6 0.7043 -3.0872 0.5708 15 7 1.2611 -3.3696 -0.7770 16 6 0.2130 -3.8434 -1.6908 17 6 -0.1790 -5.2502 -1.3192 18 8 0.3617 -5.8039 -0.3854 19 7 -1.1299 -5.8934 -2.0254 20 6 -1.4863 -7.1736 -1.6877 21 1 -1.0048 -7.6666 -0.8561 22 6 -2.4670 -7.8366 -2.4153 23 7 -2.8082 -9.0638 -2.0919 24 14 -3.2992 -6.9840 -3.8540 25 1 -2.5393 -7.2597 -5.0997 26 1 -4.6862 -7.4949 -3.9970 27 1 -3.3339 -5.5198 -3.6090 28 6 1.8394 -2.0932 -1.2498 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 0.5710 3.8983 -1.5398 33 1 2.0547 2.9537 -2.0948 34 1 4.1392 3.6441 1.1508 35 1 4.2294 4.6798 -0.3725 36 1 2.0999 4.9451 1.9145 37 1 2.1899 5.9805 0.3909 38 1 2.6016 -2.7098 1.5914 39 1 1.3093 -1.5270 1.9792 40 1 -0.2615 -2.5881 0.4912 41 1 0.6173 -4.0056 1.1513 42 1 -0.6573 -3.1915 -1.6147 43 1 0.5893 -3.8291 -2.7137 44 1 -1.5621 -5.4508 -2.7725 45 1 -3.4930 -9.5264 -2.5997 46 1 1.1080 -1.5548 -1.8526 47 1 2.7374 -2.2871 -1.8365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753445142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:07 Heat of formation + Delta-G solvation = 20.680332 kcal Electronic energy + Delta-G solvation = -27119.417549 eV Core-core repulsion = 23305.231295 eV Total energy + Delta-G solvation = -3814.186254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.73442 -39.28675 -38.14238 -37.32442 -35.17877 -33.92122 -33.02489 -31.75021 -31.26275 -29.02127 -27.30533 -26.58633 -24.61923 -23.83228 -22.73732 -21.30928 -21.12042 -19.81368 -19.35769 -18.79667 -18.34381 -17.69207 -16.62828 -16.13114 -15.70949 -15.36449 -15.23284 -15.13284 -14.93105 -14.68883 -14.53708 -13.76549 -13.63923 -13.25274 -13.16075 -12.79760 -12.68639 -12.61780 -12.35848 -12.18590 -12.09222 -11.86400 -11.81125 -11.68822 -11.39404 -11.26632 -10.98994 -10.91140 -10.60636 -10.58147 -10.46823 -10.35788 -9.98067 -9.85560 -9.56059 -8.92302 -8.61741 -8.18476 -8.06040 -6.31228 -3.82521 2.20527 2.57906 3.00677 3.05871 3.13918 3.32894 3.38856 3.73715 3.88166 3.99278 4.09756 4.21982 4.39099 4.52047 4.57031 4.64421 4.79599 4.83825 5.03403 5.04778 5.07628 5.20151 5.20185 5.26237 5.27591 5.29201 5.30537 5.33397 5.42266 5.52491 5.56585 5.59515 5.66422 5.71068 5.77742 5.83030 5.91186 5.93729 6.06586 6.28566 6.34298 7.03882 7.06778 7.11964 7.58311 7.94485 8.14356 8.60389 8.95442 9.42436 9.83877 10.81994 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027249 B = 0.002354 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.303879 B =11892.138048 C =12480.613882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.605 5.605 3 C 0.543 3.457 4 O -0.533 6.533 5 C -0.142 4.142 6 H 0.125 0.875 7 C -0.099 4.099 8 C -0.203 4.203 9 C -0.113 4.113 10 C -0.130 4.130 11 C 0.130 3.870 12 H 0.111 0.889 13 C -0.132 4.132 14 C 0.037 3.963 15 N -0.488 5.488 16 C 0.035 3.965 17 C 0.454 3.546 18 O -0.557 6.557 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.026 3.974 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.049 0.951 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 28.172 2.016 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C 0.331 3.669 4 O -0.410 6.410 5 C -0.163 4.163 6 H 0.143 0.857 7 C -0.136 4.136 8 C -0.203 4.203 9 C -0.149 4.149 10 C -0.167 4.167 11 C 0.026 3.974 12 H 0.129 0.871 13 C -0.170 4.170 14 C -0.091 4.091 15 N -0.213 5.213 16 C -0.097 4.097 17 C 0.240 3.760 18 O -0.438 6.438 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.103 4.103 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.331 27.156 2.626 28.008 hybrid contribution -1.775 0.977 -1.377 2.450 sum 4.556 28.133 1.249 28.526 Atomic orbital electron populations 1.21991 0.79604 1.03730 1.02234 1.47899 1.06977 1.05574 1.73337 1.19700 0.87389 0.84154 0.75664 1.90687 1.13718 1.87120 1.49460 1.22026 1.00739 0.88866 1.04700 0.85728 1.22650 1.01376 0.99437 0.90119 1.21178 1.01625 0.95860 1.01680 1.22600 0.89110 1.00768 1.02471 1.22783 1.01630 0.93364 0.98882 1.21976 0.98209 0.82102 0.95116 0.87131 1.22887 1.00251 0.97194 0.96699 1.23437 0.94847 0.99965 0.90808 1.64506 1.29754 1.25066 1.01925 1.22094 0.93761 0.96195 0.97646 1.19591 0.83088 0.87452 0.85899 1.90551 1.54965 1.67954 1.30358 1.42212 1.35794 1.15167 1.30121 1.19423 1.19520 0.87881 1.16366 0.86282 1.25040 0.97283 0.95759 0.98169 1.69624 1.31356 1.10877 1.40357 0.86672 0.80158 0.79364 0.83160 1.19623 1.20222 1.19606 1.23274 1.00613 0.89816 0.96583 0.92415 0.90127 0.90811 0.87544 0.88059 0.88169 0.88509 0.88528 0.88305 0.89345 0.90716 0.94108 0.88050 0.93251 0.89256 0.79801 0.91645 0.93271 0.89516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.24 59.85 0.55 1.08 16 2 N -0.60 -6.24 2.72 -172.38 -0.47 -6.71 16 3 C 0.54 6.21 7.46 -10.98 -0.08 6.13 16 4 O -0.53 -7.92 15.60 5.56 0.09 -7.83 16 5 C -0.14 -1.22 5.29 -91.77 -0.49 -1.70 16 6 H 0.13 0.82 6.44 -51.93 -0.33 0.48 16 7 C -0.10 -0.73 10.23 -26.73 -0.27 -1.00 16 8 C -0.20 -1.74 5.06 -154.49 -0.78 -2.52 16 9 C -0.11 -0.95 10.16 -26.73 -0.27 -1.22 16 10 C -0.13 -0.86 10.53 -26.69 -0.28 -1.14 16 11 C 0.13 1.53 3.44 -66.57 -0.23 1.30 16 12 H 0.11 1.45 6.97 -51.93 -0.36 1.09 16 13 C -0.13 -1.56 6.14 -24.87 -0.15 -1.71 16 14 C 0.04 0.53 5.56 -1.89 -0.01 0.52 16 15 N -0.49 -7.66 4.90 -231.89 -1.14 -8.79 16 16 C 0.03 0.57 5.19 -4.98 -0.03 0.55 16 17 C 0.45 10.19 7.61 -10.99 -0.08 10.11 16 18 O -0.56 -14.76 14.64 5.55 0.08 -14.68 16 19 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 20 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 21 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.10 5.50 -17.46 -0.10 1.00 16 23 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 24 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 28 C 0.03 0.33 6.18 -2.75 -0.02 0.31 16 29 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 30 H 0.08 0.68 4.76 -51.93 -0.25 0.43 16 31 H 0.07 0.42 5.99 -51.93 -0.31 0.11 16 32 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.79 7.89 -51.93 -0.41 0.38 16 40 H 0.04 0.53 5.66 -51.93 -0.29 0.24 16 41 H 0.10 1.78 7.10 -51.93 -0.37 1.41 16 42 H 0.05 0.70 7.83 -51.93 -0.41 0.30 16 43 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.05 0.57 6.88 -51.93 -0.36 0.21 16 47 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -34.27 375.26 -9.26 -43.53 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.09 Total: 10.25 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -2.39 Total: 3.03 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.89 Total: -54.45 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.51 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.27 -9.26 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753445142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.212 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds