Wall clock time and date at job start Fri Apr 10 2020 18:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35955 * 117.00211 * 2 1 4 4 C 1.38198 * 119.99694 * 0.02562 * 3 2 1 5 5 C 1.39769 * 119.87493 * 179.97438 * 4 3 2 6 6 C 1.47336 * 120.05792 * 179.97438 * 5 4 3 7 7 N 1.29830 * 120.00211 * 180.02562 * 6 5 4 8 8 N 1.40097 * 120.00415 * 179.97438 * 7 6 5 9 9 C 1.36347 * 127.11138 * 314.68965 * 8 7 6 10 10 N 1.30602 * 107.20496 * 179.86813 * 9 8 7 11 11 N 1.28540 * 109.90217 * 0.40744 * 10 9 8 12 12 C 1.30596 * 109.90778 * 359.73638 * 11 10 9 13 13 C 1.39824 * 119.88260 * 0.02562 * 5 4 3 14 14 C 1.37856 * 120.00289 * 0.02562 * 13 5 4 15 15 Cl 1.73593 * 119.94242 * 179.97438 * 14 13 5 16 16 C 1.39083 * 120.11567 * 359.70113 * 14 13 5 17 17 O 1.35695 * 119.93806 * 180.29411 * 16 14 13 18 18 C 1.34776 * 117.00412 * 270.25525 * 17 16 14 19 19 H 1.07999 * 120.00036 * 0.02562 * 18 17 16 20 20 C 1.38647 * 120.00422 * 179.97438 * 18 17 16 21 21 N 1.31561 * 119.99897 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00440 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47024 * 89.99862 * 22 20 18 24 24 H 1.48493 * 109.47283 * 210.00315 * 22 20 18 25 25 H 1.48506 * 109.47120 * 330.00533 * 22 20 18 26 26 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47220 * 299.99831 * 1 2 3 28 28 H 1.08996 * 109.47672 * 59.99775 * 1 2 3 29 29 H 1.08003 * 120.06265 * 0.02562 * 4 3 2 30 30 H 1.08001 * 120.00075 * 0.02562 * 6 5 4 31 31 H 1.08001 * 126.39575 * 359.97438 * 9 8 7 32 32 H 1.07999 * 126.40059 * 179.97438 * 12 11 10 33 33 H 1.07999 * 120.00469 * 179.97438 * 13 5 4 34 34 H 0.97006 * 120.00216 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2935 2.3704 0.0005 5 6 1.9307 3.6143 0.0011 6 6 1.1322 4.8525 0.0011 7 7 1.7252 6.0075 0.0011 8 7 0.9660 7.1849 0.0005 9 6 -0.1222 7.4617 -0.7730 10 7 -0.5267 8.6622 -0.4552 11 7 0.2368 9.1548 0.4540 12 6 1.1660 8.2931 0.7693 13 6 3.3273 3.6816 0.0005 14 6 4.0733 2.5223 -0.0011 15 17 5.8072 2.6077 -0.0024 16 6 3.4393 1.2845 0.0041 17 8 4.1771 0.1457 0.0086 18 6 4.5140 -0.3699 -1.1902 19 1 4.1977 0.1224 -2.0980 20 6 5.2676 -1.5317 -1.2583 21 7 5.6534 -2.1312 -0.1526 22 14 5.7340 -2.2466 -2.9198 23 1 7.0323 -1.6742 -3.3582 24 1 5.8564 -3.7222 -2.8071 25 1 4.6841 -1.9116 -3.9152 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 0.2149 2.3150 0.0014 30 1 0.0535 4.7995 0.0011 31 1 -0.5676 6.8093 -1.5095 32 1 1.9474 8.4324 1.5017 33 1 3.8218 4.6418 0.0005 34 1 6.1803 -2.9443 -0.2001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002834782.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:03 Heat of formation + Delta-G solvation = 77.087206 kcal Electronic energy + Delta-G solvation = -23415.030926 eV Core-core repulsion = 19571.074628 eV Total energy + Delta-G solvation = -3843.956298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.98692 -41.44462 -39.07970 -38.83112 -37.61627 -36.97250 -34.16368 -33.32977 -31.68946 -31.32702 -30.49496 -28.10278 -27.12808 -25.51864 -23.69295 -23.41894 -23.14582 -21.67185 -20.10716 -19.49844 -18.83400 -18.05109 -17.51780 -17.16200 -16.62832 -16.50959 -16.32913 -16.17286 -15.74467 -15.59762 -15.19559 -15.08446 -14.41373 -13.88662 -13.71744 -13.54731 -13.38481 -13.16526 -12.85100 -12.66954 -12.42137 -12.28600 -12.13434 -12.06453 -11.81506 -11.79895 -11.63474 -11.31560 -10.86394 -10.58824 -10.31329 -9.61941 -9.10209 -8.17596 -5.91368 -0.75305 0.14624 0.58535 0.77384 1.14409 1.19254 1.40660 1.45644 1.54248 1.74028 2.27988 2.45963 2.55659 2.98864 3.16255 3.45022 3.55475 3.55731 3.82754 4.02579 4.06840 4.11988 4.21685 4.38445 4.45130 4.49466 4.60239 4.76448 4.84929 4.92559 4.98887 5.13537 5.19340 5.22678 5.40002 6.17246 6.47742 6.52413 7.24022 7.54693 8.02726 9.04728 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.019002 B = 0.003163 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.199958 B = 8850.713547 C = 9657.617868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.327 6.327 3 C 0.093 3.907 4 C -0.129 4.129 5 C -0.053 4.053 6 C 0.222 3.778 7 N -0.283 5.283 8 N -0.348 5.348 9 C 0.140 3.860 10 N -0.329 5.329 11 N -0.334 5.334 12 C 0.191 3.809 13 C -0.080 4.080 14 C -0.057 4.057 15 Cl -0.060 7.060 16 C 0.097 3.903 17 O -0.253 6.253 18 C -0.355 4.355 19 H 0.068 0.932 20 C -0.027 4.027 21 N -0.930 5.930 22 Si 0.997 3.003 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.258 1.258 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.190 0.810 30 H 0.179 0.821 31 H 0.256 0.744 32 H 0.250 0.750 33 H 0.155 0.845 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.115 11.236 -0.815 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.241 6.241 3 C 0.046 3.954 4 C -0.149 4.149 5 C -0.056 4.056 6 C 0.016 3.984 7 N -0.085 5.085 8 N -0.126 5.126 9 C -0.148 4.148 10 N -0.167 5.167 11 N -0.172 5.172 12 C -0.097 4.097 13 C -0.101 4.101 14 C -0.085 4.085 15 Cl -0.031 7.031 16 C 0.049 3.951 17 O -0.166 6.166 18 C -0.431 4.431 19 H 0.086 0.914 20 C -0.222 4.222 21 N -0.574 5.574 22 Si 0.819 3.181 23 H -0.198 1.198 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.207 0.793 30 H 0.196 0.804 31 H 0.271 0.729 32 H 0.266 0.734 33 H 0.173 0.827 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.784 12.704 -0.593 18.033 hybrid contribution 0.736 -1.911 -0.623 2.140 sum -12.047 10.794 -1.217 16.221 Atomic orbital electron populations 1.23488 0.76188 1.05598 1.03070 1.86343 1.23629 1.25881 1.88208 1.19388 0.90766 0.86263 0.99010 1.21522 1.01991 0.88561 1.02847 1.17806 0.91003 0.90595 1.06213 1.25092 1.00445 0.88736 0.84150 1.75781 1.19522 0.91989 1.21196 1.47986 1.22346 1.12044 1.30198 1.27740 0.88607 0.97819 1.00673 1.74162 1.22720 1.08276 1.11578 1.74293 1.05027 1.25744 1.12181 1.27247 1.02007 0.81842 0.98557 1.21183 0.93274 0.96677 0.98958 1.21284 0.85844 0.93967 1.07367 1.98353 1.09526 1.98429 1.96827 1.19042 0.89102 0.87912 0.99022 1.83865 1.68074 1.35154 1.29513 1.21033 1.32665 1.07764 0.81667 0.91384 1.26044 0.97466 0.96542 1.02104 1.70178 1.38759 1.19732 1.28693 0.84888 0.78951 0.77527 0.76755 1.19761 1.20268 1.18207 0.87573 0.90315 0.90344 0.79328 0.80409 0.72854 0.73426 0.82724 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -11.48 10.27 -79.05 -0.81 -12.29 16 3 C 0.09 3.11 6.70 22.56 0.15 3.26 16 4 C -0.13 -2.62 8.77 22.63 0.20 -2.42 16 5 C -0.05 -1.03 5.87 -20.13 -0.12 -1.15 16 6 C 0.22 2.75 10.44 87.38 0.91 3.66 16 7 N -0.28 -4.69 10.74 -52.24 -0.56 -5.25 16 8 N -0.35 -6.07 3.67 -200.50 -0.74 -6.80 16 9 C 0.14 2.32 12.42 179.81 2.23 4.55 16 10 N -0.33 -7.98 12.20 -59.41 -0.72 -8.70 16 11 N -0.33 -8.33 12.20 -59.42 -0.72 -9.06 16 12 C 0.19 3.58 13.05 179.81 2.35 5.93 16 13 C -0.08 -2.13 9.34 22.56 0.21 -1.92 16 14 C -0.06 -2.10 6.33 22.38 0.14 -1.96 16 15 Cl -0.06 -2.37 28.49 -2.72 -0.08 -2.45 16 16 C 0.10 4.16 5.60 22.78 0.13 4.28 16 17 O -0.25 -14.05 8.90 -7.60 -0.07 -14.12 16 18 C -0.35 -19.89 9.82 67.92 0.67 -19.22 16 19 H 0.07 3.65 7.76 -2.91 -0.02 3.63 16 20 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 21 N -0.93 -57.30 13.67 21.61 0.30 -57.00 16 22 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.08 1.03 7.66 -2.39 -0.02 1.01 16 28 H 0.08 1.03 7.66 -2.39 -0.02 1.02 16 29 H 0.19 1.83 6.28 -2.91 -0.02 1.81 16 30 H 0.18 0.65 7.88 -2.91 -0.02 0.63 16 31 H 0.26 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.25 2.85 8.06 -2.91 -0.02 2.82 16 33 H 0.16 3.69 7.54 -2.91 -0.02 3.67 16 34 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -82.27 331.99 8.23 -74.04 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.16 Total: 0.57 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 8.45 Total: -4.75 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.45 Total: -86.81 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.88 Total: -26.42 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -0.08 Total: -2.45 kcal Total: -82.27 8.23 -74.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002834782.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.129 kcal (2) G-P(sol) polarization free energy of solvation -82.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds