Wall clock time and date at job start Fri Apr 10 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86800 * 120.00249 * 2 1 4 4 H 1.48498 * 109.46926 * 274.98483 * 3 2 1 5 5 H 1.48504 * 109.47003 * 34.98503 * 3 2 1 6 6 H 1.48501 * 109.47414 * 154.98271 * 3 2 1 7 7 C 1.40073 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00236 * 173.59080 * 7 2 1 9 9 C 1.39734 * 120.00180 * 353.59217 * 7 2 1 10 10 O 1.22091 * 119.99593 * 6.41355 * 9 7 2 11 11 N 1.34773 * 119.99956 * 186.41995 * 9 7 2 12 12 N 1.28997 * 119.99643 * 180.02562 * 11 9 7 13 13 C 1.31489 * 120.00079 * 179.97438 * 12 11 9 14 14 C 1.40410 * 120.00389 * 179.97438 * 13 12 11 15 15 Br 1.89099 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37665 * 120.00572 * 179.97438 * 14 13 12 17 17 C 1.46443 * 120.00301 * 187.22363 * 16 14 13 18 18 C 1.40358 * 120.20821 * 213.88846 * 17 16 14 19 19 C 1.37719 * 119.77895 * 180.02562 * 18 17 16 20 20 C 1.38563 * 120.21634 * 359.97438 * 19 18 17 21 21 C 1.38560 * 120.43230 * 0.02562 * 20 19 18 22 22 C 1.37727 * 120.21191 * 0.02562 * 21 20 19 23 23 H 0.97002 * 119.99837 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00479 * 359.97438 * 11 9 7 25 25 H 1.08002 * 119.99977 * 359.97438 * 13 12 11 26 26 H 1.08003 * 119.99509 * 7.22146 * 16 14 13 27 27 H 1.08000 * 120.10940 * 0.04406 * 18 17 16 28 28 H 1.08001 * 119.89484 * 180.26206 * 19 18 17 29 29 H 1.07998 * 119.78384 * 180.02562 * 20 19 18 30 30 H 1.07997 * 119.89518 * 179.97438 * 21 20 19 31 31 H 1.07996 * 120.10962 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4950 2.6200 0.8028 6 1 3.5871 1.4120 0.5921 7 6 2.0072 -1.2131 0.0005 8 1 3.0822 -1.2161 -0.1039 9 6 1.3151 -2.4194 0.1361 10 8 0.0942 -2.4259 0.1364 11 7 1.9953 -3.5755 0.2667 12 7 1.3563 -4.6892 0.3914 13 6 2.0198 -5.8172 0.5184 14 6 1.3244 -7.0294 0.6546 15 35 -0.5666 -7.0395 0.6563 16 6 2.0190 -8.2105 0.7870 17 6 1.3023 -9.4874 0.7700 18 6 1.7547 -10.5617 1.5520 19 6 1.0742 -11.7587 1.5289 20 6 -0.0539 -11.9045 0.7376 21 6 -0.5083 -10.8499 -0.0378 22 6 0.1592 -9.6452 -0.0290 23 1 -0.4850 0.8401 -0.0004 24 1 2.9652 -3.5704 0.2663 25 1 3.0998 -5.8115 0.5178 26 1 3.0927 -8.1953 0.9033 27 1 2.6334 -10.4497 2.1699 28 1 1.4182 -12.5852 2.1331 29 1 -0.5825 -12.8462 0.7252 30 1 -1.3883 -10.9731 -0.6516 31 1 -0.1961 -8.8245 -0.6343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002912407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:06 Heat of formation + Delta-G solvation = 52.000990 kcal Electronic energy + Delta-G solvation = -17396.308064 eV Core-core repulsion = 14304.543509 eV Total energy + Delta-G solvation = -3091.764555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 322.006 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.18763 -38.95750 -36.25809 -34.62178 -32.79770 -31.41129 -30.99606 -29.94859 -28.65041 -26.84383 -23.99231 -22.52101 -21.52355 -20.17966 -19.31950 -17.75254 -17.08152 -16.41662 -15.82727 -15.17624 -15.03197 -14.35501 -14.14050 -13.87213 -13.48480 -13.31075 -12.89415 -12.63154 -12.10078 -11.84798 -11.59840 -11.36450 -11.25393 -11.03765 -10.87904 -10.62931 -10.50047 -9.70093 -9.50635 -9.36184 -9.14081 -8.75335 -8.37648 -8.02080 -6.98623 -6.61071 -5.17630 0.66350 1.48974 1.84109 2.08185 2.93064 3.01704 3.06283 3.24001 3.75188 3.90830 4.10571 4.27268 4.90801 4.92960 4.97464 5.17185 5.43691 5.45144 5.51976 5.57606 5.80745 5.84803 5.96862 6.11432 6.27247 6.42191 6.53702 6.62048 6.71386 7.01830 7.03349 7.58726 7.74628 8.54772 8.67080 9.08599 10.18104 10.40203 Molecular weight = 322.01amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.003006 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.258397 B = 9313.600551 C = 9822.222756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.085 3.915 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.536 3.464 10 O -0.536 6.536 11 N -0.511 5.511 12 N -0.135 5.135 13 C -0.080 4.080 14 C -0.005 4.005 15 Br -0.042 7.042 16 C -0.121 4.121 17 C -0.051 4.051 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.105 4.105 23 H 0.278 0.722 24 H 0.366 0.634 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -17.654 1.584 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.140 4.140 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.093 0.907 9 C 0.348 3.652 10 O -0.414 6.414 11 N -0.256 5.256 12 N 0.039 4.961 13 C -0.277 4.277 14 C -0.086 4.086 15 Br 0.044 6.956 16 C -0.149 4.149 17 C -0.051 4.051 18 C -0.125 4.125 19 C -0.146 4.146 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.124 4.124 23 H 0.089 0.911 24 H 0.203 0.797 25 H 0.133 0.867 26 H 0.156 0.844 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.437 -16.814 1.508 16.943 hybrid contribution 2.332 0.534 0.073 2.393 sum 3.769 -16.280 1.581 16.785 Atomic orbital electron populations 1.70039 1.07474 1.28609 1.29858 1.25797 0.94750 1.01000 0.92453 0.86128 0.80221 0.80114 0.79151 1.19301 1.19870 1.18428 1.19596 0.95367 0.90015 1.51277 0.90677 1.16787 0.88024 0.80346 0.80053 1.90813 1.12957 1.84309 1.53365 1.45832 1.08645 1.04673 1.66497 1.71701 1.31232 0.93433 0.99708 1.22048 0.96359 0.90470 1.18827 1.21773 0.89586 0.94335 1.02916 1.96626 1.03787 1.98490 1.96729 1.22267 0.98840 0.89163 1.04674 1.18977 0.95436 0.93388 0.97329 1.21319 1.00033 0.92623 0.98573 1.20977 0.96305 0.97431 0.99903 1.21253 0.96848 0.98693 0.97364 1.21026 1.00160 0.93109 0.99800 1.22041 0.94131 0.97733 0.98500 0.91060 0.79714 0.86685 0.84373 0.86020 0.86380 0.86562 0.86234 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.60 11.71 55.55 0.65 -19.95 16 2 C 0.09 2.20 5.49 -17.35 -0.10 2.11 16 3 Si 0.92 18.41 29.56 -169.99 -5.03 13.39 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.53 -13.82 9.20 -38.34 -0.35 -14.17 16 8 H 0.08 1.74 7.86 -52.48 -0.41 1.33 16 9 C 0.54 14.91 7.57 -15.70 -0.12 14.79 16 10 O -0.54 -17.30 15.17 4.84 0.07 -17.23 16 11 N -0.51 -11.64 5.87 28.73 0.17 -11.47 16 12 N -0.14 -3.01 9.81 30.85 0.30 -2.71 16 13 C -0.08 -1.40 10.31 -16.88 -0.17 -1.58 16 14 C 0.00 -0.07 6.12 -38.97 -0.24 -0.31 16 15 Br -0.04 -0.72 28.48 -68.01 -1.94 -2.66 16 16 C -0.12 -1.59 9.58 -36.49 -0.35 -1.94 16 17 C -0.05 -0.66 5.51 -105.00 -0.58 -1.24 16 18 C -0.11 -1.18 9.81 -38.97 -0.38 -1.56 16 19 C -0.13 -1.29 10.03 -39.65 -0.40 -1.68 16 20 C -0.12 -1.25 10.05 -39.34 -0.40 -1.65 16 21 C -0.12 -1.39 10.03 -39.65 -0.40 -1.79 16 22 C -0.11 -1.37 7.86 -38.97 -0.31 -1.68 16 23 H 0.28 6.96 8.29 -40.82 -0.34 6.63 16 24 H 0.37 6.82 8.40 -190.13 -1.60 5.23 16 25 H 0.12 1.65 7.95 -52.49 -0.42 1.23 16 26 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 27 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.87 5.51 -52.49 -0.29 1.59 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -32.85 301.76 -8.97 -41.82 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.96 Total: 4.97 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.79 Total: -10.71 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 1.12 Total: -34.13 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.07 Total: -17.23 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -1.94 Total: -2.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.85 -8.97 -41.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002912407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.821 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds