Wall clock time and date at job start Fri Apr 10 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86800 * 120.00249 * 2 1 4 4 H 1.48498 * 109.46926 * 274.98483 * 3 2 1 5 5 H 1.48504 * 109.47003 * 34.98503 * 3 2 1 6 6 H 1.48501 * 109.47414 * 154.98271 * 3 2 1 7 7 C 1.40073 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00236 * 173.59080 * 7 2 1 9 9 C 1.39734 * 120.00180 * 353.59217 * 7 2 1 10 10 O 1.22091 * 119.99593 * 6.41355 * 9 7 2 11 11 N 1.34773 * 119.99956 * 186.41995 * 9 7 2 12 12 N 1.28997 * 119.99643 * 180.02562 * 11 9 7 13 13 C 1.31489 * 120.00079 * 179.97438 * 12 11 9 14 14 C 1.40410 * 120.00389 * 179.97438 * 13 12 11 15 15 Br 1.89099 * 119.99954 * 359.97438 * 14 13 12 16 16 C 1.37665 * 120.00572 * 179.97438 * 14 13 12 17 17 C 1.46443 * 120.00301 * 187.22363 * 16 14 13 18 18 C 1.40358 * 120.20821 * 213.88846 * 17 16 14 19 19 C 1.37719 * 119.77895 * 180.02562 * 18 17 16 20 20 C 1.38563 * 120.21634 * 359.97438 * 19 18 17 21 21 C 1.38560 * 120.43230 * 0.02562 * 20 19 18 22 22 C 1.37727 * 120.21191 * 0.02562 * 21 20 19 23 23 H 0.97002 * 119.99837 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00479 * 359.97438 * 11 9 7 25 25 H 1.08002 * 119.99977 * 359.97438 * 13 12 11 26 26 H 1.08003 * 119.99509 * 7.22146 * 16 14 13 27 27 H 1.08000 * 120.10940 * 0.04406 * 18 17 16 28 28 H 1.08001 * 119.89484 * 180.26206 * 19 18 17 29 29 H 1.07998 * 119.78384 * 180.02562 * 20 19 18 30 30 H 1.07997 * 119.89518 * 179.97438 * 21 20 19 31 31 H 1.07996 * 120.10962 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3830 2.1072 -1.3948 5 1 1.4950 2.6200 0.8028 6 1 3.5871 1.4120 0.5921 7 6 2.0072 -1.2131 0.0005 8 1 3.0822 -1.2161 -0.1039 9 6 1.3151 -2.4194 0.1361 10 8 0.0942 -2.4259 0.1364 11 7 1.9953 -3.5755 0.2667 12 7 1.3563 -4.6892 0.3914 13 6 2.0198 -5.8172 0.5184 14 6 1.3244 -7.0294 0.6546 15 35 -0.5666 -7.0395 0.6563 16 6 2.0190 -8.2105 0.7870 17 6 1.3023 -9.4874 0.7700 18 6 1.7547 -10.5617 1.5520 19 6 1.0742 -11.7587 1.5289 20 6 -0.0539 -11.9045 0.7376 21 6 -0.5083 -10.8499 -0.0378 22 6 0.1592 -9.6452 -0.0290 23 1 -0.4850 0.8401 -0.0004 24 1 2.9652 -3.5704 0.2663 25 1 3.0998 -5.8115 0.5178 26 1 3.0927 -8.1953 0.9033 27 1 2.6334 -10.4497 2.1699 28 1 1.4182 -12.5852 2.1331 29 1 -0.5825 -12.8462 0.7252 30 1 -1.3883 -10.9731 -0.6516 31 1 -0.1961 -8.8245 -0.6343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002912407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:06 Heat of formation + Delta-G solvation = 30.292138 kcal Electronic energy + Delta-G solvation = -17397.249431 eV Core-core repulsion = 14304.543509 eV Total energy + Delta-G solvation = -3092.705922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 322.006 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77754 -39.94267 -37.98867 -35.94152 -34.75028 -32.72546 -31.95806 -31.18649 -30.06670 -28.50660 -25.32350 -23.44354 -22.77837 -21.85187 -20.61842 -19.31285 -18.44550 -17.75906 -17.45790 -16.33122 -16.05048 -15.86286 -15.78513 -15.05009 -14.83570 -14.42327 -14.23932 -13.75724 -13.55286 -13.33640 -13.04408 -12.85193 -12.75247 -12.29960 -12.08839 -12.03533 -11.90463 -11.06387 -11.03031 -10.71543 -10.46152 -10.09696 -9.76467 -9.56650 -8.51355 -8.41668 -7.17849 -0.46324 0.62110 0.77097 0.92285 1.38100 1.39278 1.58186 1.87692 2.13972 2.42671 2.54704 3.00664 3.56187 3.81458 4.06891 4.16912 4.23522 4.36411 4.48871 4.57768 4.69325 4.76325 5.01723 5.10465 5.15208 5.23834 5.27555 5.64478 5.69021 5.73246 5.75309 5.94225 6.16643 6.59432 6.90616 7.51543 8.35122 8.53636 Molecular weight = 322.01amu Principal moments of inertia in cm(-1) A = 0.044628 B = 0.003006 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.258397 B = 9313.600551 C = 9822.222756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.029 3.971 3 Si 1.011 2.989 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.242 1.242 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.528 3.472 10 O -0.604 6.604 11 N -0.527 5.527 12 N -0.223 5.223 13 C -0.017 4.017 14 C -0.073 4.073 15 Br -0.068 7.068 16 C -0.042 4.042 17 C -0.092 4.092 18 C -0.097 4.097 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.115 4.115 23 H 0.284 0.716 24 H 0.382 0.618 25 H 0.153 0.847 26 H 0.178 0.822 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.131 0.869 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 -20.447 2.400 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.191 4.191 3 Si 0.828 3.172 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.165 1.165 7 C -0.586 4.586 8 H 0.119 0.881 9 C 0.341 3.659 10 O -0.488 6.488 11 N -0.273 5.273 12 N -0.042 5.042 13 C -0.218 4.218 14 C -0.154 4.154 15 Br 0.017 6.983 16 C -0.070 4.070 17 C -0.092 4.092 18 C -0.116 4.116 19 C -0.150 4.150 20 C -0.132 4.132 21 C -0.156 4.156 22 C -0.134 4.134 23 H 0.094 0.906 24 H 0.221 0.779 25 H 0.169 0.831 26 H 0.195 0.805 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.149 0.851 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.473 -19.646 2.322 20.282 hybrid contribution 1.479 0.629 -0.132 1.612 sum 5.952 -19.017 2.191 20.046 Atomic orbital electron populations 1.70210 1.10082 1.30147 1.31580 1.27185 0.95523 1.05567 0.90811 0.84810 0.78945 0.73799 0.79604 1.18253 1.19464 1.16512 1.20153 0.96708 0.90301 1.51474 0.88088 1.17122 0.87471 0.82189 0.79141 1.90739 1.15554 1.85979 1.56573 1.44793 1.08719 1.04005 1.69742 1.71717 1.32692 0.94112 1.05634 1.22690 0.98169 0.89630 1.11334 1.21823 0.88793 0.94992 1.09820 1.96586 1.06064 1.98534 1.97103 1.22906 1.00418 0.88191 0.95524 1.19145 0.96414 0.94015 0.99623 1.21650 1.00399 0.91958 0.97548 1.21399 0.95859 0.98024 0.99748 1.21672 0.96596 0.99184 0.95707 1.21267 1.00711 0.93042 1.00619 1.22061 0.94460 0.98087 0.98835 0.90551 0.77913 0.83069 0.80499 0.83420 0.83319 0.83881 0.85106 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.05 11.71 21.84 0.26 -46.79 16 2 C 0.03 1.54 5.49 85.31 0.47 2.00 16 3 Si 1.01 38.08 29.56 68.60 2.03 40.11 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.24 -8.31 7.11 99.48 0.71 -7.61 16 7 C -0.55 -29.94 9.20 23.08 0.21 -29.73 16 8 H 0.10 4.71 7.86 -2.91 -0.02 4.68 16 9 C 0.53 31.15 7.57 84.60 0.64 31.79 16 10 O -0.60 -42.00 15.17 -5.61 -0.09 -42.09 16 11 N -0.53 -25.13 5.87 -181.06 -1.06 -26.20 16 12 N -0.22 -10.30 9.81 -56.32 -0.55 -10.85 16 13 C -0.02 -0.57 10.31 85.27 0.88 0.31 16 14 C -0.07 -2.29 6.12 22.66 0.14 -2.15 16 15 Br -0.07 -2.42 28.48 -20.37 -0.58 -3.00 16 16 C -0.04 -0.96 9.58 24.27 0.23 -0.73 16 17 C -0.09 -2.06 5.51 -20.11 -0.11 -2.17 16 18 C -0.10 -1.68 9.81 22.66 0.22 -1.46 16 19 C -0.13 -2.02 10.03 22.22 0.22 -1.79 16 20 C -0.11 -1.86 10.05 22.42 0.23 -1.64 16 21 C -0.14 -2.83 10.03 22.23 0.22 -2.60 16 22 C -0.12 -2.84 7.86 22.66 0.18 -2.66 16 23 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 24 H 0.38 14.60 8.40 -219.73 -1.85 12.76 16 25 H 0.15 3.86 7.95 -2.91 -0.02 3.84 16 26 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 27 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 29 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.12 3.32 5.51 -2.91 -0.02 3.31 16 Total: -1.00 -79.42 301.76 2.86 -76.56 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.67 Total: 23.08 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 3.53 Total: -10.83 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.36 Total: -83.84 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -0.09 Total: -42.09 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 35 Polarization: -2.42 SS G_CDS: -0.58 Total: -3.00 kcal Total: -79.42 2.86 -76.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002912407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.852 kcal (2) G-P(sol) polarization free energy of solvation -79.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds