Wall clock time and date at job start Fri Apr 10 2020 18:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 N 1.46503 * 109.47079 * 125.00109 * 3 2 1 5 5 C 1.36676 * 119.78825 * 269.72392 * 4 3 2 6 6 S 1.76203 * 118.46013 * 0.02562 * 5 4 3 7 7 C 1.76196 * 99.99934 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.38793 * 120.00066 * 179.97438 * 7 6 5 10 10 N 1.31531 * 119.99981 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00336 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46985 * 90.00156 * 11 9 7 13 13 H 1.48498 * 109.47087 * 210.00312 * 11 9 7 14 14 H 1.48495 * 109.46774 * 330.00202 * 11 9 7 15 15 N 1.30943 * 123.08036 * 179.68440 * 5 4 3 16 16 C 1.34793 * 121.64736 * 0.59810 * 15 5 4 17 17 C 1.39837 * 121.53237 * 179.71522 * 16 15 5 18 18 C 1.36591 * 119.82343 * 180.02562 * 17 16 15 19 19 C 1.39018 * 120.96505 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 119.72019 * 179.97438 * 19 18 17 21 21 C 1.37891 * 120.56120 * 359.97438 * 19 18 17 22 22 C 1.39384 * 119.39874 * 0.02562 * 21 19 18 23 23 C 1.35339 * 119.78949 * 89.99837 * 4 3 2 24 24 O 1.21735 * 121.25909 * 359.97438 * 23 4 3 25 25 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 29 29 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 30 30 H 0.97002 * 120.00083 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.08543 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.51929 * 180.02562 * 18 17 16 33 33 H 1.07996 * 120.30250 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5853 1.8352 2.3346 6 16 0.9356 2.4379 2.4762 7 6 0.9396 2.9472 4.1629 8 1 1.8305 2.8264 4.7614 9 6 -0.2019 3.5044 4.7223 10 7 -1.2868 3.6519 3.9933 11 14 -0.1975 4.0450 6.5104 12 1 0.2364 5.4625 6.5979 13 1 -1.5659 3.9106 7.0714 14 1 0.7403 3.1916 7.2831 15 7 3.3603 1.8848 3.3889 16 6 4.6343 1.4462 3.3514 17 6 5.4617 1.5057 4.4771 18 6 6.7477 1.0518 4.3998 19 6 7.2513 0.5282 3.2145 20 17 8.8910 -0.0388 3.1523 21 6 6.4596 0.4555 2.0879 22 6 5.1443 0.9131 2.1452 23 6 4.2540 0.8630 0.9770 24 8 4.6353 0.4155 -0.0890 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0044 27 1 1.8499 -0.9354 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1316 0.0896 30 1 -2.0846 4.0411 4.3844 31 1 5.0851 1.9101 5.4051 32 1 7.3823 1.0997 5.2724 33 1 6.8550 0.0475 1.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003370014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:09 Heat of formation + Delta-G solvation = 21.865736 kcal Electronic energy + Delta-G solvation = -21682.086737 eV Core-core repulsion = 18246.195976 eV Total energy + Delta-G solvation = -3435.890761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.028 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06684 -38.43266 -37.06561 -36.29223 -34.88121 -32.98812 -32.50524 -31.14314 -29.40902 -26.76466 -25.95093 -24.50435 -23.45398 -21.71079 -19.94979 -19.18106 -18.59219 -17.71511 -16.91306 -15.82471 -15.71552 -15.25831 -15.16693 -14.89284 -14.47399 -14.30207 -13.69182 -13.54817 -13.26052 -13.11044 -12.65094 -12.29702 -12.08665 -11.92031 -11.54534 -11.47943 -11.32233 -11.31728 -10.92579 -10.87678 -10.47431 -9.92236 -9.58109 -9.53379 -9.43727 -9.22007 -9.03399 -9.01656 -8.12231 -7.02413 -6.76431 -4.50835 0.77289 1.05217 2.07574 2.31348 2.32511 2.53733 2.94152 3.05368 3.08166 3.14995 3.17005 3.76508 4.27513 4.52177 4.61836 4.72261 4.88329 4.96326 5.02539 5.19855 5.23292 5.46013 5.51869 5.64393 5.76110 6.00833 6.05392 6.10646 6.23468 6.40330 6.53409 6.70350 6.77081 6.89868 7.01094 7.32465 8.03320 8.18617 8.43804 8.77562 10.30377 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.004767 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.684849 B = 5872.640775 C = 7959.276284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.179 4.179 3 C 0.122 3.878 4 N -0.530 5.530 5 C 0.329 3.671 6 S 0.193 5.807 7 C -0.542 4.542 8 H 0.120 0.880 9 C 0.079 3.921 10 N -0.868 5.868 11 Si 0.935 3.065 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.263 1.263 15 N -0.542 5.542 16 C 0.212 3.788 17 C -0.124 4.124 18 C -0.057 4.057 19 C -0.095 4.095 20 Cl -0.084 7.084 21 C -0.014 4.014 22 C -0.231 4.231 23 C 0.559 3.441 24 O -0.529 6.529 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.279 0.721 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 -3.882 -2.701 8.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.198 4.198 3 C 0.000 4.000 4 N -0.254 5.254 5 C -0.035 4.035 6 S 0.439 5.561 7 C -0.690 4.690 8 H 0.137 0.863 9 C -0.132 4.132 10 N -0.501 5.501 11 Si 0.760 3.240 12 H -0.197 1.197 13 H -0.205 1.205 14 H -0.188 1.188 15 N -0.271 5.271 16 C 0.090 3.910 17 C -0.145 4.145 18 C -0.078 4.078 19 C -0.124 4.124 20 Cl -0.055 7.055 21 C -0.034 4.034 22 C -0.241 4.241 23 C 0.352 3.648 24 O -0.406 6.406 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.803 -3.703 -3.452 7.701 hybrid contribution 1.403 -0.164 1.230 1.873 sum 7.206 -3.867 -2.222 8.475 Atomic orbital electron populations 1.23959 0.95429 1.02612 0.97239 1.22973 0.96226 0.97856 1.02765 1.21005 0.92178 0.97631 0.89232 1.46437 1.12690 1.54533 1.11712 1.26320 1.03706 0.91818 0.81657 1.83569 0.93243 1.61777 1.17558 1.23710 1.03495 1.46481 0.95280 0.86273 1.25211 0.93912 0.93691 1.00427 1.69889 1.02541 1.40252 1.37391 0.85871 0.77978 0.79402 0.80784 1.19688 1.20509 1.18754 1.69126 1.04090 1.29918 1.23959 1.18969 0.90701 0.89683 0.91661 1.20473 0.92364 1.03410 0.98293 1.20713 0.95362 0.95450 0.96229 1.20476 0.86653 1.09194 0.96070 1.98328 1.20120 1.88331 1.98746 1.20675 0.91132 0.94340 0.97263 1.20306 0.96102 1.12864 0.94843 1.18240 0.80882 0.77329 0.88363 1.90791 1.75242 1.46370 1.28222 0.87531 0.88032 0.87237 0.87858 0.87917 0.91100 0.84018 0.84867 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 14.32 29.01 0.42 -1.58 16 2 C -0.18 -2.59 9.85 -36.03 -0.35 -2.95 16 3 C 0.12 1.89 5.33 -5.20 -0.03 1.87 16 4 N -0.53 -9.90 2.61 -118.67 -0.31 -10.21 16 5 C 0.33 6.79 7.77 -88.50 -0.69 6.10 16 6 S 0.19 4.15 19.48 -107.50 -2.09 2.06 16 7 C -0.54 -13.30 9.23 30.94 0.29 -13.02 16 8 H 0.12 2.99 6.48 -52.49 -0.34 2.65 16 9 C 0.08 1.90 5.49 -17.48 -0.10 1.81 16 10 N -0.87 -21.65 13.22 55.49 0.73 -20.92 16 11 Si 0.94 19.10 29.55 -169.99 -5.02 14.08 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 15 N -0.54 -11.58 8.28 -10.89 -0.09 -11.67 16 16 C 0.21 4.07 6.62 -84.77 -0.56 3.51 16 17 C -0.12 -2.00 9.98 -39.58 -0.40 -2.39 16 18 C -0.06 -0.80 9.73 -39.89 -0.39 -1.18 16 19 C -0.09 -1.39 6.32 -39.42 -0.25 -1.64 16 20 Cl -0.08 -1.07 28.94 -51.86 -1.50 -2.57 16 21 C -0.01 -0.23 9.45 -39.28 -0.37 -0.60 16 22 C -0.23 -4.31 5.90 -104.74 -0.62 -4.93 16 23 C 0.56 10.85 7.66 -12.47 -0.10 10.75 16 24 O -0.53 -10.68 16.32 5.16 0.08 -10.59 16 25 H 0.11 1.36 7.84 -52.48 -0.41 0.95 16 26 H 0.10 1.14 8.06 -52.49 -0.42 0.71 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.10 1.51 7.47 -51.93 -0.39 1.12 16 29 H 0.10 1.52 6.12 -51.93 -0.32 1.21 16 30 H 0.28 6.51 8.31 -40.82 -0.34 6.18 16 31 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.14 2.14 7.82 -52.49 -0.41 1.73 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -26.80 323.60 -9.16 -35.96 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.69 Total: 3.24 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.14 Total: -4.25 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.33 Total: -42.80 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.09 Total: 2.06 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.80 -9.16 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003370014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.830 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds