Wall clock time and date at job start Fri Apr 10 2020 18:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 N 1.46503 * 109.47079 * 125.00109 * 3 2 1 5 5 C 1.36676 * 119.78825 * 269.72392 * 4 3 2 6 6 S 1.76203 * 118.46013 * 0.02562 * 5 4 3 7 7 C 1.76196 * 99.99934 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.38793 * 120.00066 * 179.97438 * 7 6 5 10 10 N 1.31531 * 119.99981 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00336 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46985 * 90.00156 * 11 9 7 13 13 H 1.48498 * 109.47087 * 210.00312 * 11 9 7 14 14 H 1.48495 * 109.46774 * 330.00202 * 11 9 7 15 15 N 1.30943 * 123.08036 * 179.68440 * 5 4 3 16 16 C 1.34793 * 121.64736 * 0.59810 * 15 5 4 17 17 C 1.39837 * 121.53237 * 179.71522 * 16 15 5 18 18 C 1.36591 * 119.82343 * 180.02562 * 17 16 15 19 19 C 1.39018 * 120.96505 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 119.72019 * 179.97438 * 19 18 17 21 21 C 1.37891 * 120.56120 * 359.97438 * 19 18 17 22 22 C 1.39384 * 119.39874 * 0.02562 * 21 19 18 23 23 C 1.35339 * 119.78949 * 89.99837 * 4 3 2 24 24 O 1.21735 * 121.25909 * 359.97438 * 23 4 3 25 25 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 29 29 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 30 30 H 0.97002 * 120.00083 * 179.97438 * 10 9 7 31 31 H 1.08001 * 120.08543 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.51929 * 180.02562 * 18 17 16 33 33 H 1.07996 * 120.30250 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5853 1.8352 2.3346 6 16 0.9356 2.4379 2.4762 7 6 0.9396 2.9472 4.1629 8 1 1.8305 2.8264 4.7614 9 6 -0.2019 3.5044 4.7223 10 7 -1.2868 3.6519 3.9933 11 14 -0.1975 4.0450 6.5104 12 1 0.2364 5.4625 6.5979 13 1 -1.5659 3.9106 7.0714 14 1 0.7403 3.1916 7.2831 15 7 3.3603 1.8848 3.3889 16 6 4.6343 1.4462 3.3514 17 6 5.4617 1.5057 4.4771 18 6 6.7477 1.0518 4.3998 19 6 7.2513 0.5282 3.2145 20 17 8.8910 -0.0388 3.1523 21 6 6.4596 0.4555 2.0879 22 6 5.1443 0.9131 2.1452 23 6 4.2540 0.8630 0.9770 24 8 4.6353 0.4155 -0.0890 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0044 27 1 1.8499 -0.9354 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1316 0.0896 30 1 -2.0846 4.0411 4.3844 31 1 5.0851 1.9101 5.4051 32 1 7.3823 1.0997 5.2724 33 1 6.8550 0.0475 1.1695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003370014.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:08 Heat of formation + Delta-G solvation = 9.773010 kcal Electronic energy + Delta-G solvation = -21682.611117 eV Core-core repulsion = 18246.195976 eV Total energy + Delta-G solvation = -3436.415141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.028 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.53631 -39.78810 -38.55991 -37.49557 -36.16908 -34.76203 -33.84168 -32.46182 -30.83514 -28.04909 -27.74581 -25.97046 -24.80044 -23.10650 -21.12363 -20.72099 -19.99629 -19.26152 -18.41885 -17.24422 -17.05100 -16.96990 -16.66173 -16.25821 -15.73386 -15.67925 -15.02262 -14.91019 -14.75314 -14.54273 -14.00218 -13.60820 -13.44581 -13.28652 -12.98958 -12.97903 -12.95704 -12.70769 -12.13752 -12.11244 -11.98865 -11.41483 -11.27544 -10.96470 -10.84041 -10.82052 -10.37797 -10.31349 -9.65952 -8.58984 -8.54064 -6.33293 -0.64204 -0.30427 0.56693 1.01644 1.05221 1.13465 1.42530 1.43863 1.56344 1.58702 1.80223 2.12674 2.82961 2.93940 2.94632 3.11749 3.47475 3.65532 3.85309 3.92810 3.97316 4.18206 4.23814 4.35152 4.56414 4.74795 4.79750 4.89237 5.00593 5.10542 5.16437 5.44816 5.51397 5.59801 5.61191 5.73519 6.31923 6.53202 6.89405 6.97374 8.53775 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.004767 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.684849 B = 5872.640775 C = 7959.276284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.197 4.197 3 C 0.117 3.883 4 N -0.527 5.527 5 C 0.331 3.669 6 S 0.177 5.823 7 C -0.566 4.566 8 H 0.107 0.893 9 C 0.039 3.961 10 N -0.897 5.897 11 Si 0.991 3.009 12 H -0.268 1.268 13 H -0.273 1.273 14 H -0.265 1.265 15 N -0.561 5.561 16 C 0.179 3.821 17 C -0.122 4.122 18 C -0.041 4.041 19 C -0.080 4.080 20 Cl -0.057 7.057 21 C -0.023 4.023 22 C -0.241 4.241 23 C 0.551 3.449 24 O -0.543 6.543 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.282 0.718 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.742 -4.455 -1.717 9.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.216 4.216 3 C -0.004 4.004 4 N -0.250 5.250 5 C -0.035 4.035 6 S 0.421 5.579 7 C -0.714 4.714 8 H 0.125 0.875 9 C -0.169 4.169 10 N -0.532 5.532 11 Si 0.813 3.187 12 H -0.193 1.193 13 H -0.197 1.197 14 H -0.189 1.189 15 N -0.289 5.289 16 C 0.060 3.940 17 C -0.143 4.143 18 C -0.061 4.061 19 C -0.109 4.109 20 Cl -0.028 7.028 21 C -0.044 4.044 22 C -0.250 4.250 23 C 0.345 3.655 24 O -0.422 6.422 25 H 0.126 0.874 26 H 0.141 0.859 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.171 0.829 32 H 0.190 0.810 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.644 -4.300 -2.469 9.112 hybrid contribution 1.186 -0.118 0.880 1.481 sum 8.830 -4.418 -1.589 10.001 Atomic orbital electron populations 1.24168 0.94922 1.03719 0.94679 1.22862 0.96688 0.96982 1.05076 1.21210 0.92051 0.98619 0.88471 1.46537 1.13018 1.53677 1.11790 1.26182 1.03308 0.91744 0.82269 1.83344 0.94335 1.63924 1.16328 1.23820 1.03365 1.47405 0.96807 0.87510 1.25928 0.93529 0.93642 1.03768 1.69944 1.03034 1.41446 1.38756 0.85045 0.78079 0.78941 0.76668 1.19275 1.19747 1.18882 1.69064 1.05282 1.29898 1.24673 1.19299 0.90473 0.91210 0.93056 1.20714 0.92852 1.03021 0.97758 1.21086 0.94703 0.93189 0.97134 1.20666 0.87571 1.07053 0.95579 1.98350 1.17915 1.87874 1.98688 1.20781 0.90529 0.94714 0.98328 1.20444 0.96977 1.13112 0.94469 1.18474 0.81201 0.77284 0.88590 1.90770 1.75502 1.47219 1.28689 0.87375 0.85910 0.87702 0.87178 0.87462 0.90854 0.82913 0.80978 0.83936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 14.32 67.78 0.97 -2.49 16 2 C -0.20 -5.71 9.85 25.64 0.25 -5.46 16 3 C 0.12 3.72 5.33 85.63 0.46 4.17 16 4 N -0.53 -20.02 2.61 -647.24 -1.69 -21.71 16 5 C 0.33 13.98 7.77 179.61 1.40 15.37 16 6 S 0.18 7.85 19.48 -56.49 -1.10 6.75 16 7 C -0.57 -28.44 9.23 67.95 0.63 -27.82 16 8 H 0.11 5.49 6.48 -2.91 -0.02 5.47 16 9 C 0.04 1.91 5.49 84.87 0.47 2.38 16 10 N -0.90 -45.48 13.22 21.64 0.29 -45.19 16 11 Si 0.99 39.26 29.55 68.60 2.03 41.29 16 12 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 15 N -0.56 -24.25 8.28 -188.36 -1.56 -25.81 16 16 C 0.18 6.79 6.62 39.85 0.26 7.06 16 17 C -0.12 -3.70 9.98 22.27 0.22 -3.48 16 18 C -0.04 -1.00 9.73 22.07 0.21 -0.79 16 19 C -0.08 -2.10 6.32 22.37 0.14 -1.96 16 20 Cl -0.06 -1.26 28.94 -2.72 -0.08 -1.34 16 21 C -0.02 -0.73 9.45 22.46 0.21 -0.51 16 22 C -0.24 -8.86 5.90 -19.94 -0.12 -8.98 16 23 C 0.55 21.52 7.66 86.44 0.66 22.18 16 24 O -0.54 -21.97 16.32 -4.46 -0.07 -22.05 16 25 H 0.11 2.71 7.84 -2.91 -0.02 2.69 16 26 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 27 H 0.10 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.11 3.27 7.47 -2.39 -0.02 3.25 16 29 H 0.11 3.26 6.12 -2.39 -0.01 3.25 16 30 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 31 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 33 H 0.14 4.25 7.82 -2.91 -0.02 4.23 16 Total: -1.00 -57.86 323.60 4.74 -53.13 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.16 Total: 15.25 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.77 Total: -0.32 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -2.96 Total: -92.70 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.07 Total: -22.05 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 7.85 SS G_CDS: -1.10 Total: 6.75 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -57.86 4.74 -53.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003370014.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.898 kcal (2) G-P(sol) polarization free energy of solvation -57.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds