Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49856 * 2 1 4 4 C 1.53141 * 109.50052 * 239.92561 * 2 1 3 5 5 C 1.53142 * 108.97165 * 169.28646 * 4 2 1 6 6 C 1.51507 * 108.71535 * 49.80172 * 5 4 2 7 7 S 1.75813 * 125.03601 * 163.59899 * 6 5 4 8 8 C 1.75709 * 91.21906 * 180.02562 * 7 6 5 9 9 C 1.46836 * 125.34829 * 179.72902 * 8 7 6 10 10 N 1.31634 * 126.32750 * 180.02562 * 9 8 7 11 11 N 1.28657 * 109.36397 * 179.97438 * 10 9 8 12 12 C 1.31407 * 109.46488 * 0.02562 * 11 10 9 13 13 S 1.76200 * 126.25255 * 179.97438 * 12 11 10 14 14 C 1.76201 * 100.00084 * 359.97438 * 13 12 11 15 15 H 1.08002 * 119.99532 * 359.97438 * 14 13 12 16 16 C 1.38526 * 120.00194 * 180.02562 * 14 13 12 17 17 N 1.31719 * 119.99914 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00163 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47345 * 89.99702 * 18 16 14 20 20 H 1.48498 * 109.47043 * 209.99947 * 18 16 14 21 21 H 1.48495 * 109.46950 * 329.99445 * 18 16 14 22 22 O 1.34859 * 107.49209 * 359.77031 * 12 11 10 23 23 C 1.35852 * 109.31042 * 0.02562 * 8 7 6 24 24 C 1.35064 * 124.64906 * 343.62385 * 6 5 4 25 25 C 1.52334 * 122.80478 * 359.97438 * 24 6 5 26 26 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47248 * 300.07102 * 1 2 3 28 28 H 1.08991 * 109.47402 * 60.07894 * 1 2 3 29 29 H 1.09002 * 109.55729 * 49.43480 * 4 2 1 30 30 H 1.09006 * 109.63620 * 289.17901 * 4 2 1 31 31 H 1.09005 * 109.59594 * 290.03715 * 5 4 2 32 32 H 1.08997 * 109.59751 * 169.57160 * 5 4 2 33 33 H 0.96994 * 119.99921 * 179.97438 * 17 16 14 34 34 H 1.07998 * 122.38687 * 179.97438 * 23 8 7 35 35 H 1.09002 * 109.58218 * 222.73272 * 25 24 6 36 36 H 1.08997 * 109.69925 * 102.38780 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2492 5 6 3.5488 -0.4876 -1.3792 6 6 4.2059 -0.7989 -0.0500 7 16 5.9266 -1.0721 0.1858 8 6 5.6882 -1.3282 1.9077 9 6 6.7480 -1.6399 2.8749 10 7 6.5914 -1.8357 4.1672 11 7 7.7342 -2.0868 4.7022 12 6 8.6663 -2.0614 3.7762 13 16 10.3878 -2.3444 4.0226 14 6 10.4040 -2.6389 5.7597 15 1 9.4825 -2.6037 6.3219 16 6 11.5986 -2.9145 6.4045 17 7 12.7225 -2.9569 5.7189 18 14 11.6156 -3.2274 8.2460 19 1 11.4291 -4.6779 8.5034 20 1 12.9167 -2.7877 8.8108 21 1 10.5146 -2.4651 8.8878 22 8 8.0637 -1.7835 2.6021 23 6 4.3683 -1.1989 2.2026 24 6 3.5487 -0.9064 1.1250 25 6 2.0415 -0.7222 1.2475 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5149 0.8893 28 1 -0.3634 0.5126 -0.8906 29 1 1.5334 -0.3323 -2.1309 30 1 1.8455 -1.7920 -1.1595 31 1 3.7345 0.5534 -1.6438 32 1 3.9559 -1.1414 -2.1504 33 1 13.5591 -3.1495 6.1704 34 1 3.9856 -1.3155 3.2057 35 1 1.8169 -0.1270 2.1327 36 1 1.5578 -1.6955 1.3294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004937690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = 41.384107 kcal Electronic energy + Delta-G solvation = -20883.030434 eV Core-core repulsion = 17585.862854 eV Total energy + Delta-G solvation = -3297.167580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.05335 -39.49915 -36.03322 -35.30545 -32.89243 -32.36462 -31.27630 -28.76333 -26.80650 -25.94284 -24.55563 -23.36336 -22.89687 -21.86141 -20.23243 -18.62513 -18.27531 -17.55697 -16.58901 -16.57340 -15.59242 -15.21851 -15.10314 -14.82340 -14.58544 -14.40669 -13.82057 -13.31756 -13.26644 -12.89191 -12.51581 -12.39100 -12.17525 -11.75094 -11.65972 -11.63223 -11.36364 -11.26813 -11.26211 -10.99276 -10.92852 -10.78213 -10.56947 -10.52197 -10.28922 -10.15271 -9.35444 -9.12265 -8.46302 -8.32767 -7.02065 -6.68654 -4.46465 0.45102 1.37147 1.85034 1.87654 1.92251 2.60601 3.09888 3.13266 3.21648 3.26187 3.35348 3.84263 4.33986 4.44858 4.49093 4.74145 4.76713 4.80070 4.86005 4.98560 5.12356 5.19193 5.24224 5.37753 5.45759 5.50711 5.53648 5.60155 5.70016 5.75003 5.84858 5.87800 5.93763 6.04508 6.08635 6.11148 6.31913 6.43525 7.36519 8.14258 8.82446 8.99522 10.38511 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.037425 B = 0.002463 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.990656 B =11365.433164 C =12058.850931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.046 4.046 6 C -0.184 4.184 7 S 0.155 5.845 8 C -0.102 4.102 9 C 0.166 3.834 10 N -0.248 5.248 11 N -0.311 5.311 12 C 0.137 3.863 13 S 0.226 5.774 14 C -0.553 4.553 15 H 0.110 0.890 16 C 0.080 3.920 17 N -0.871 5.871 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 O -0.221 6.221 23 C -0.087 4.087 24 C -0.100 4.100 25 C -0.050 4.050 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.279 0.721 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.036 5.085 -14.364 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.085 4.085 6 C -0.303 4.303 7 S 0.423 5.577 8 C -0.221 4.221 9 C -0.048 4.048 10 N -0.099 5.099 11 N -0.166 5.166 12 C -0.174 4.174 13 S 0.462 5.538 14 C -0.701 4.701 15 H 0.128 0.872 16 C -0.130 4.130 17 N -0.505 5.505 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.188 1.188 22 O -0.106 6.106 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.974 4.887 -14.866 23.086 hybrid contribution -1.302 -0.126 1.789 2.216 sum -18.276 4.761 -13.077 22.972 Atomic orbital electron populations 1.21828 0.94812 1.01973 1.01832 1.21149 0.95535 0.99934 0.94560 0.90758 1.21641 0.94048 1.01254 0.97907 1.20321 0.94869 1.01985 0.91365 1.25076 0.96073 1.09836 0.99358 1.84260 1.04675 1.68534 1.00207 1.20855 0.92970 1.13367 0.94930 1.23606 0.81084 1.07753 0.92359 1.74525 1.19016 1.12914 1.03448 1.74959 0.93446 1.22954 1.25248 1.31606 1.06230 0.99781 0.79741 1.83950 0.79628 1.77411 1.12831 1.23395 0.98865 1.56495 0.91342 0.87194 1.25121 0.93804 0.93040 1.01082 1.69959 0.98930 1.44253 1.37359 0.85803 0.78148 0.79215 0.80426 1.19619 1.20380 1.18787 1.84985 1.19498 1.70611 1.35472 1.20348 0.90017 1.00902 1.00877 1.19364 0.96817 1.03925 0.91046 1.20596 0.88991 1.01065 0.98282 0.92538 0.92486 0.92589 0.91097 0.91329 0.90131 0.90362 0.91070 0.83235 0.90384 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.17 37.16 0.34 -0.46 16 2 C -0.09 -0.64 2.67 -90.57 -0.24 -0.88 16 3 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 4 C -0.11 -0.71 5.24 -26.59 -0.14 -0.85 16 5 C -0.05 -0.36 6.25 -27.41 -0.17 -0.53 16 6 C -0.18 -2.02 6.35 -35.04 -0.22 -2.25 16 7 S 0.15 2.07 23.27 -107.50 -2.50 -0.43 16 8 C -0.10 -1.70 6.43 -36.96 -0.24 -1.94 16 9 C 0.17 3.48 8.23 -14.16 -0.12 3.36 16 10 N -0.25 -5.73 12.22 31.95 0.39 -5.34 16 11 N -0.31 -7.91 11.05 30.38 0.34 -7.58 16 12 C 0.14 3.36 8.52 52.58 0.45 3.81 16 13 S 0.23 5.64 21.89 -107.50 -2.35 3.29 16 14 C -0.55 -15.03 9.36 30.84 0.29 -14.74 16 15 H 0.11 3.07 6.91 -52.49 -0.36 2.70 16 16 C 0.08 2.11 5.49 -17.49 -0.10 2.01 16 17 N -0.87 -23.42 13.22 55.48 0.73 -22.69 16 18 Si 0.94 20.52 29.55 -169.99 -5.02 15.50 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 22 O -0.22 -4.94 10.93 1.81 0.02 -4.92 16 23 C -0.09 -1.23 9.93 -40.34 -0.40 -1.63 16 24 C -0.10 -1.14 5.76 -104.84 -0.60 -1.74 16 25 C -0.05 -0.42 5.43 -27.10 -0.15 -0.57 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 30 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.15 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -29.70 336.87 -8.76 -38.47 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -4.14 Total: -4.96 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -1.30 Total: -16.41 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 1.46 Total: -35.60 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.02 Total: -4.92 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -4.86 Total: 2.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.70 -8.76 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004937690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.851 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds