Wall clock time and date at job start Fri Apr 10 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49856 * 2 1 4 4 C 1.53141 * 109.50052 * 239.92561 * 2 1 3 5 5 C 1.53142 * 108.97165 * 169.28646 * 4 2 1 6 6 C 1.51507 * 108.71535 * 49.80172 * 5 4 2 7 7 S 1.75813 * 125.03601 * 163.59899 * 6 5 4 8 8 C 1.75709 * 91.21906 * 180.02562 * 7 6 5 9 9 C 1.46836 * 125.34829 * 179.72902 * 8 7 6 10 10 N 1.31634 * 126.32750 * 180.02562 * 9 8 7 11 11 N 1.28657 * 109.36397 * 179.97438 * 10 9 8 12 12 C 1.31407 * 109.46488 * 0.02562 * 11 10 9 13 13 S 1.76200 * 126.25255 * 179.97438 * 12 11 10 14 14 C 1.76201 * 100.00084 * 359.97438 * 13 12 11 15 15 H 1.08002 * 119.99532 * 359.97438 * 14 13 12 16 16 C 1.38526 * 120.00194 * 180.02562 * 14 13 12 17 17 N 1.31719 * 119.99914 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00163 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47345 * 89.99702 * 18 16 14 20 20 H 1.48498 * 109.47043 * 209.99947 * 18 16 14 21 21 H 1.48495 * 109.46950 * 329.99445 * 18 16 14 22 22 O 1.34859 * 107.49209 * 359.77031 * 12 11 10 23 23 C 1.35852 * 109.31042 * 0.02562 * 8 7 6 24 24 C 1.35064 * 124.64906 * 343.62385 * 6 5 4 25 25 C 1.52334 * 122.80478 * 359.97438 * 24 6 5 26 26 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47248 * 300.07102 * 1 2 3 28 28 H 1.08991 * 109.47402 * 60.07894 * 1 2 3 29 29 H 1.09002 * 109.55729 * 49.43480 * 4 2 1 30 30 H 1.09006 * 109.63620 * 289.17901 * 4 2 1 31 31 H 1.09005 * 109.59594 * 290.03715 * 5 4 2 32 32 H 1.08997 * 109.59751 * 169.57160 * 5 4 2 33 33 H 0.96994 * 119.99921 * 179.97438 * 17 16 14 34 34 H 1.07998 * 122.38687 * 179.97438 * 23 8 7 35 35 H 1.09002 * 109.58218 * 222.73272 * 25 24 6 36 36 H 1.08997 * 109.69925 * 102.38780 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2492 5 6 3.5488 -0.4876 -1.3792 6 6 4.2059 -0.7989 -0.0500 7 16 5.9266 -1.0721 0.1858 8 6 5.6882 -1.3282 1.9077 9 6 6.7480 -1.6399 2.8749 10 7 6.5914 -1.8357 4.1672 11 7 7.7342 -2.0868 4.7022 12 6 8.6663 -2.0614 3.7762 13 16 10.3878 -2.3444 4.0226 14 6 10.4040 -2.6389 5.7597 15 1 9.4825 -2.6037 6.3219 16 6 11.5986 -2.9145 6.4045 17 7 12.7225 -2.9569 5.7189 18 14 11.6156 -3.2274 8.2460 19 1 11.4291 -4.6779 8.5034 20 1 12.9167 -2.7877 8.8108 21 1 10.5146 -2.4651 8.8878 22 8 8.0637 -1.7835 2.6021 23 6 4.3683 -1.1989 2.2026 24 6 3.5487 -0.9064 1.1250 25 6 2.0415 -0.7222 1.2475 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5149 0.8893 28 1 -0.3634 0.5126 -0.8906 29 1 1.5334 -0.3323 -2.1309 30 1 1.8455 -1.7920 -1.1595 31 1 3.7345 0.5534 -1.6438 32 1 3.9559 -1.1414 -2.1504 33 1 13.5591 -3.1495 6.1704 34 1 3.9856 -1.3155 3.2057 35 1 1.8169 -0.1270 2.1327 36 1 1.5578 -1.6955 1.3294 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004937690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:19 Heat of formation + Delta-G solvation = 22.047819 kcal Electronic energy + Delta-G solvation = -20883.868918 eV Core-core repulsion = 17585.862854 eV Total energy + Delta-G solvation = -3298.006064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.055 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.87079 -40.34020 -37.16464 -36.89582 -34.89540 -33.32825 -32.41409 -29.97476 -28.00671 -27.44713 -25.84203 -25.05056 -23.76501 -23.16089 -21.03308 -20.46661 -19.50255 -18.65129 -18.40006 -18.24160 -17.12181 -16.89304 -16.63617 -15.66503 -15.43395 -15.08484 -15.07186 -14.58793 -14.07310 -13.73834 -13.60247 -13.53968 -13.41146 -13.21610 -13.13868 -12.99826 -12.87479 -12.83176 -12.45317 -12.37702 -12.14154 -12.00869 -11.76485 -11.46049 -11.39386 -11.23653 -11.14108 -11.11174 -9.69403 -9.48512 -8.86101 -8.66035 -6.51532 -0.83605 0.04274 0.25071 0.33818 0.80007 1.20673 1.34367 1.39511 1.51039 1.67311 1.70751 2.04227 2.76692 2.83366 3.30735 3.63804 3.71648 3.95933 3.99195 4.05860 4.12442 4.20448 4.38180 4.40695 4.60549 4.62814 4.75070 4.85218 4.87846 4.97268 5.03544 5.05957 5.10222 5.23135 5.34064 5.36154 5.49312 5.52368 5.59976 6.06865 6.80514 7.17801 8.42939 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.037425 B = 0.002463 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.990656 B =11365.433164 C =12058.850931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.107 4.107 5 C -0.051 4.051 6 C -0.149 4.149 7 S 0.160 5.840 8 C -0.169 4.169 9 C 0.201 3.799 10 N -0.285 5.285 11 N -0.335 5.335 12 C 0.128 3.872 13 S 0.208 5.792 14 C -0.579 4.579 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.897 5.897 18 Si 1.004 2.996 19 H -0.262 1.262 20 H -0.262 1.262 21 H -0.269 1.269 22 O -0.222 6.222 23 C -0.057 4.057 24 C -0.116 4.116 25 C -0.049 4.049 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.287 0.713 34 H 0.149 0.851 35 H 0.082 0.918 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.661 5.708 -16.110 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.090 4.090 6 C -0.269 4.269 7 S 0.429 5.571 8 C -0.287 4.287 9 C -0.014 4.014 10 N -0.134 5.134 11 N -0.188 5.188 12 C -0.185 4.185 13 S 0.443 5.557 14 C -0.726 4.726 15 H 0.112 0.888 16 C -0.168 4.168 17 N -0.532 5.532 18 Si 0.824 3.176 19 H -0.187 1.187 20 H -0.186 1.186 21 H -0.193 1.193 22 O -0.107 6.107 23 C -0.093 4.093 24 C -0.127 4.127 25 C -0.088 4.088 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.101 0.899 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.638 5.516 -16.624 26.314 hybrid contribution -0.833 -0.217 2.032 2.206 sum -20.471 5.299 -14.592 25.692 Atomic orbital electron populations 1.21795 0.93590 1.02358 1.02397 1.21149 0.96509 0.99554 0.93779 0.90901 1.21676 0.92870 1.01387 0.98656 1.20612 0.95623 1.03362 0.89437 1.25719 0.94516 1.05719 1.00913 1.84235 1.06872 1.68293 0.97704 1.20976 0.92734 1.18791 0.96193 1.24453 0.81071 1.03270 0.92578 1.74469 1.18176 1.16135 1.04574 1.74870 0.94359 1.23208 1.26363 1.31398 1.05958 1.00963 0.80216 1.83700 0.80432 1.79377 1.12236 1.23491 0.98844 1.58022 0.92286 0.88774 1.26009 0.93128 0.92293 1.05420 1.70009 0.99511 1.44533 1.39115 0.84875 0.78521 0.79322 0.74877 1.18696 1.18610 1.19317 1.84987 1.20334 1.70460 1.34905 1.20655 0.89421 0.97417 1.01805 1.19654 0.98418 1.04439 0.90159 1.20713 0.86508 1.01971 0.99628 0.92246 0.92491 0.91560 0.88790 0.91361 0.88361 0.88825 0.90320 0.83334 0.89937 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.17 71.98 0.66 -0.39 16 2 C -0.09 -0.90 2.67 -10.76 -0.03 -0.93 16 3 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 4 C -0.11 -0.91 5.24 30.69 0.16 -0.75 16 5 C -0.05 -0.58 6.25 30.15 0.19 -0.39 16 6 C -0.15 -2.84 6.35 25.21 0.16 -2.68 16 7 S 0.16 4.07 23.27 -56.49 -1.31 2.75 16 8 C -0.17 -5.56 6.43 23.97 0.15 -5.41 16 9 C 0.20 8.60 8.23 86.97 0.72 9.31 16 10 N -0.29 -13.65 12.22 -166.29 -2.03 -15.68 16 11 N -0.33 -17.76 11.05 -171.55 -1.89 -19.66 16 12 C 0.13 6.54 8.52 130.31 1.11 7.65 16 13 S 0.21 10.89 21.89 -56.49 -1.24 9.65 16 14 C -0.58 -32.65 9.36 67.89 0.64 -32.02 16 15 H 0.09 5.50 6.91 -2.91 -0.02 5.48 16 16 C 0.04 2.10 5.49 84.78 0.47 2.57 16 17 N -0.90 -48.96 13.22 21.60 0.29 -48.67 16 18 Si 1.00 42.38 29.55 68.60 2.03 44.41 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 22 O -0.22 -10.29 10.93 -16.43 -0.18 -10.47 16 23 C -0.06 -1.56 9.93 21.78 0.22 -1.35 16 24 C -0.12 -2.37 5.76 -20.00 -0.12 -2.48 16 25 C -0.05 -0.68 5.43 30.36 0.16 -0.51 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.09 0.46 8.11 -2.39 -0.02 0.44 16 30 H 0.07 0.63 8.11 -2.38 -0.02 0.61 16 31 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.29 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.08 8.13 -2.39 -0.02 1.06 16 Total: -1.00 -66.67 336.87 1.25 -65.42 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.11 Total: -0.39 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 4.49 Total: -27.36 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -3.64 Total: -84.01 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.18 Total: -10.47 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 14.95 SS G_CDS: -2.55 Total: 12.40 kcal Total: -66.67 1.25 -65.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004937690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.468 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds