Wall clock time and date at job start Fri Apr 10 2020 18:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30612 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48501 * 109.46931 * 274.98219 * 3 2 1 5 5 H 1.48502 * 109.47121 * 34.98311 * 3 2 1 6 6 H 1.48497 * 109.47253 * 154.98531 * 3 2 1 7 7 C 1.40182 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00075 * 186.25454 * 7 2 1 9 9 C 1.41744 * 119.99830 * 6.25637 * 7 2 1 10 10 O 1.21795 * 120.00158 * 353.76657 * 9 7 2 11 11 N 1.34777 * 119.99896 * 173.75855 * 9 7 2 12 12 N 1.40094 * 120.00108 * 179.97438 * 11 9 7 13 13 C 1.28049 * 120.00161 * 180.02562 * 12 11 9 14 14 C 1.50698 * 120.00297 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.62307 * 0.39517 * 14 13 12 16 16 C 1.54239 * 109.63201 * 240.00410 * 14 13 12 17 17 C 1.45546 * 112.40339 * 160.29636 * 16 14 13 18 18 C 1.54237 * 112.33169 * 61.98690 * 17 16 14 19 19 C 1.50552 * 108.48078 * 279.88102 * 18 17 16 20 20 H 1.08998 * 108.92394 * 333.50441 * 19 18 17 21 21 N 1.46901 * 108.83822 * 214.96076 * 19 18 17 22 22 C 1.46849 * 110.99685 * 71.88310 * 21 19 18 23 23 C 1.53041 * 109.52016 * 174.16233 * 22 21 19 24 24 C 1.53131 * 109.27753 * 59.18434 * 23 22 21 25 25 C 1.53115 * 109.15692 * 302.34234 * 24 23 22 26 26 C 1.46852 * 110.99963 * 307.67892 * 21 19 18 27 27 C 1.54072 * 112.41740 * 94.26571 * 19 18 17 28 28 C 1.50476 * 109.62992 * 120.97155 * 14 13 12 29 29 H 0.97004 * 119.99782 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99864 * 0.02562 * 11 9 7 31 31 H 1.08000 * 119.99986 * 0.02562 * 13 12 11 32 32 H 1.09000 * 108.88961 * 39.54336 * 16 14 13 33 33 H 1.08997 * 108.81778 * 280.99787 * 16 14 13 34 34 H 1.09004 * 108.89105 * 182.68605 * 17 16 14 35 35 H 1.09000 * 108.89669 * 301.27338 * 17 16 14 36 36 H 1.09001 * 109.62713 * 39.67199 * 18 17 16 37 37 H 1.08990 * 109.63244 * 160.25354 * 18 17 16 38 38 H 1.08993 * 109.46553 * 294.17613 * 22 21 19 39 39 H 1.08992 * 109.46110 * 54.15022 * 22 21 19 40 40 H 1.08994 * 109.50690 * 299.24448 * 23 22 21 41 41 H 1.09001 * 109.50217 * 179.11921 * 23 22 21 42 42 H 1.08993 * 109.52091 * 182.43810 * 24 23 22 43 43 H 1.08993 * 109.57173 * 62.27907 * 24 23 22 44 44 H 1.09003 * 109.50825 * 297.71340 * 25 24 23 45 45 H 1.09000 * 109.50220 * 177.59380 * 25 24 23 46 46 H 1.09000 * 109.45938 * 305.85190 * 26 21 19 47 47 H 1.09004 * 109.45977 * 65.82672 * 26 21 19 48 48 H 1.09002 * 108.81044 * 197.41850 * 27 19 18 49 49 H 1.08994 * 108.81287 * 79.13704 * 27 19 18 50 50 H 1.09003 * 108.87328 * 334.64500 * 28 14 13 51 51 H 1.08996 * 108.87617 * 93.18434 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3824 2.1072 -1.3948 5 1 1.4943 2.6200 0.8027 6 1 3.5864 1.4120 0.5920 7 6 2.0070 -1.2140 0.0005 8 1 3.0821 -1.2168 0.1024 9 6 1.3045 -2.4379 -0.1327 10 8 0.0866 -2.4441 -0.1334 11 7 1.9844 -3.5948 -0.2587 12 7 1.2901 -4.8046 -0.3898 13 6 1.9360 -5.9038 -0.5091 14 6 1.1893 -7.2052 -0.6495 15 1 0.1161 -7.0148 -0.6356 16 6 1.5639 -8.1458 0.5140 17 6 0.5811 -9.2009 0.7128 18 6 0.4545 -10.1230 -0.5171 19 6 -0.4173 -9.4407 -1.5374 20 1 -1.0925 -8.7560 -1.0242 21 7 -1.2141 -10.4577 -2.2366 22 6 -2.2604 -11.0003 -1.3607 23 6 -3.1585 -11.9457 -2.1618 24 6 -2.3094 -13.0822 -2.7383 25 6 -1.1978 -12.4878 -3.6075 26 6 -0.3566 -11.5267 -2.7645 27 6 0.4018 -8.6492 -2.5749 28 6 1.5718 -7.8703 -1.9440 29 1 -0.4850 0.8401 0.0004 30 1 2.9544 -3.5899 -0.2578 31 1 3.0160 -5.8983 -0.5081 32 1 1.6431 -7.5600 1.4298 33 1 2.5315 -8.6002 0.3012 34 1 0.8760 -9.8000 1.5743 35 1 -0.3888 -8.7464 0.9147 36 1 1.4420 -10.3061 -0.9406 37 1 -0.0009 -11.0679 -0.2209 38 1 -1.7986 -11.5475 -0.5390 39 1 -2.8595 -10.1822 -0.9608 40 1 -3.6315 -11.3960 -2.9756 41 1 -3.9256 -12.3603 -1.5078 42 1 -2.9374 -13.7341 -3.3455 43 1 -1.8675 -13.6568 -1.9244 44 1 -1.6399 -11.9466 -4.4440 45 1 -0.5640 -13.2896 -3.9863 46 1 0.4271 -11.0908 -3.3842 47 1 0.0962 -12.0714 -1.9361 48 1 -0.2583 -7.9440 -3.0799 49 1 0.8002 -9.3450 -3.3131 50 1 1.9072 -7.1075 -2.6467 51 1 2.3932 -8.5616 -1.7560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006947197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:53 Heat of formation + Delta-G solvation = -16.982140 kcal Electronic energy + Delta-G solvation = -27404.897710 eV Core-core repulsion = 23724.911383 eV Total energy + Delta-G solvation = -3679.986327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.33935 -38.21400 -37.40373 -35.37755 -33.93159 -32.68531 -32.40596 -31.15674 -30.73074 -29.28419 -26.58331 -25.25788 -24.99123 -23.38898 -22.81868 -21.33131 -20.46278 -19.75004 -19.67046 -18.71650 -17.45144 -16.44190 -16.08380 -15.57795 -15.46250 -15.22123 -14.91388 -14.46990 -14.22331 -14.11371 -13.89073 -13.72083 -13.32174 -13.20006 -13.06392 -12.88679 -12.62185 -12.40804 -12.26696 -11.94843 -11.47507 -11.41119 -11.38287 -11.24544 -11.05394 -10.90050 -10.82140 -10.73458 -10.64370 -10.57412 -10.50333 -10.41496 -10.33755 -10.16500 -10.06434 -9.27685 -8.95070 -8.35140 -7.68910 -7.49242 -6.34606 -4.86943 2.87827 3.08863 3.13656 3.17805 3.69271 3.80197 4.14175 4.47429 4.50866 4.54774 4.64340 4.67734 4.75406 4.93218 4.99686 5.07140 5.14048 5.20398 5.21462 5.27551 5.33643 5.34997 5.41146 5.45620 5.48870 5.56588 5.62702 5.66606 5.71608 5.80167 5.82530 5.85383 5.87506 5.93606 5.98022 6.03770 6.09138 6.11177 6.22597 6.28125 6.30315 6.32573 6.40457 6.62925 6.84891 7.01156 7.02854 7.27376 7.89153 8.07852 8.82676 8.86667 9.39504 10.46009 10.72283 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.026973 B = 0.002099 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.839554 B =13334.863882 C =13661.157120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.088 3.912 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.562 3.438 10 O -0.554 6.554 11 N -0.601 5.601 12 N -0.204 5.204 13 C 0.000 4.000 14 C -0.023 4.023 15 H 0.087 0.913 16 C -0.108 4.108 17 C -0.113 4.113 18 C -0.146 4.146 19 C 0.085 3.915 20 H 0.083 0.917 21 N -0.535 5.535 22 C 0.054 3.946 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.118 4.118 26 C 0.051 3.949 27 C -0.104 4.104 28 C -0.106 4.106 29 H 0.273 0.727 30 H 0.366 0.634 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.034 0.966 48 H 0.067 0.933 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -25.294 -3.893 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.369 3.631 10 O -0.433 6.433 11 N -0.347 5.347 12 N -0.010 5.010 13 C -0.216 4.216 14 C -0.043 4.043 15 H 0.105 0.895 16 C -0.146 4.146 17 C -0.151 4.151 18 C -0.185 4.185 19 C -0.023 4.023 20 H 0.101 0.899 21 N -0.258 5.258 22 C -0.074 4.074 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.077 4.077 27 C -0.142 4.142 28 C -0.145 4.145 29 H 0.084 0.916 30 H 0.201 0.799 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.094 0.906 47 H 0.052 0.948 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.700 -24.355 -4.227 24.729 hybrid contribution 2.353 0.202 0.699 2.463 sum 1.653 -24.153 -3.527 24.465 Atomic orbital electron populations 1.70023 1.07317 1.27876 1.32458 1.25754 0.94648 1.00598 0.92455 0.86230 0.80178 0.80749 0.78896 1.19541 1.20179 1.18695 1.19946 0.94791 0.89746 1.53336 0.91170 1.17015 0.87669 0.80470 0.77921 1.90661 1.13616 1.85000 1.54021 1.48004 1.07102 1.02795 1.76822 1.73886 1.28832 0.93237 1.05037 1.25442 0.96869 0.93213 1.06026 1.19601 1.00536 0.89752 0.94456 0.89481 1.20472 0.99022 0.96341 0.98801 1.20413 1.00403 0.96885 0.97359 1.22074 1.01071 0.98631 0.96715 1.21618 0.94447 0.93002 0.93216 0.89910 1.62107 1.13627 1.13106 1.36997 1.22083 0.93520 0.97835 0.93944 1.21587 0.97523 0.96267 1.00107 1.21570 0.97474 0.97556 0.99249 1.21594 0.97264 0.98049 0.98641 1.22118 0.95397 0.92242 0.97942 1.21888 0.96651 0.98396 0.97281 1.21341 0.97745 0.98775 0.96669 0.91603 0.79872 0.89252 0.91857 0.92140 0.92420 0.91902 0.91362 0.92039 0.94856 0.90741 0.91092 0.91801 0.92079 0.92516 0.91165 0.91907 0.90559 0.94767 0.91439 0.91929 0.91594 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -22.40 11.76 55.56 0.65 -21.74 16 2 C 0.09 2.45 5.49 -17.34 -0.10 2.35 16 3 Si 0.92 19.76 29.56 -169.99 -5.03 14.73 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.54 -15.35 9.31 -37.51 -0.35 -15.70 16 8 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 9 C 0.56 16.78 7.68 -14.92 -0.11 16.67 16 10 O -0.55 -18.96 15.24 5.10 0.08 -18.88 16 11 N -0.60 -14.81 6.24 29.13 0.18 -14.62 16 12 N -0.20 -4.65 10.93 32.68 0.36 -4.30 16 13 C 0.00 0.00 9.30 -13.86 -0.13 -0.13 16 14 C -0.02 -0.30 2.27 -92.38 -0.21 -0.51 16 15 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 16 C -0.11 -1.19 4.67 -29.60 -0.14 -1.33 16 17 C -0.11 -1.10 5.27 -29.60 -0.16 -1.25 16 18 C -0.15 -1.30 3.80 -27.31 -0.10 -1.41 16 19 C 0.09 0.85 1.68 -68.38 -0.12 0.74 16 20 H 0.08 0.96 6.39 -51.93 -0.33 0.63 16 21 N -0.53 -5.12 4.55 -227.49 -1.04 -6.16 16 22 C 0.05 0.48 5.16 -3.83 -0.02 0.46 16 23 C -0.12 -0.90 6.09 -26.64 -0.16 -1.06 16 24 C -0.12 -0.85 6.00 -26.60 -0.16 -1.01 16 25 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 26 C 0.05 0.42 4.74 -3.83 -0.02 0.40 16 27 C -0.10 -1.10 5.39 -25.62 -0.14 -1.24 16 28 C -0.11 -1.19 4.88 -27.44 -0.13 -1.32 16 29 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 30 H 0.37 7.65 8.59 -182.59 -1.57 6.08 16 31 H 0.09 1.33 8.00 -52.49 -0.42 0.91 16 32 H 0.06 0.78 7.96 -51.93 -0.41 0.36 16 33 H 0.06 0.59 7.46 -51.93 -0.39 0.20 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.67 7.47 -51.93 -0.39 0.28 16 36 H 0.07 0.59 6.96 -51.93 -0.36 0.23 16 37 H 0.06 0.54 5.36 -51.93 -0.28 0.26 16 38 H 0.03 0.29 6.64 -51.93 -0.34 -0.06 16 39 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 47 H 0.03 0.28 6.62 -51.93 -0.34 -0.06 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.60 6.06 -51.93 -0.31 0.29 16 50 H 0.07 0.81 7.70 -51.93 -0.40 0.41 16 51 H 0.06 0.58 6.62 -51.93 -0.34 0.23 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -34.80 381.68 -11.17 -45.96 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -9.92 Total: 4.62 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.21 Total: -5.37 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.16 Total: -46.82 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.08 Total: -18.88 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.80 -11.17 -45.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006947197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.979 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds