Wall clock time and date at job start Fri Apr 10 2020 18:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30612 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48501 * 109.46931 * 274.98219 * 3 2 1 5 5 H 1.48502 * 109.47121 * 34.98311 * 3 2 1 6 6 H 1.48497 * 109.47253 * 154.98531 * 3 2 1 7 7 C 1.40182 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00075 * 186.25454 * 7 2 1 9 9 C 1.41744 * 119.99830 * 6.25637 * 7 2 1 10 10 O 1.21795 * 120.00158 * 353.76657 * 9 7 2 11 11 N 1.34777 * 119.99896 * 173.75855 * 9 7 2 12 12 N 1.40094 * 120.00108 * 179.97438 * 11 9 7 13 13 C 1.28049 * 120.00161 * 180.02562 * 12 11 9 14 14 C 1.50698 * 120.00297 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.62307 * 0.39517 * 14 13 12 16 16 C 1.54239 * 109.63201 * 240.00410 * 14 13 12 17 17 C 1.45546 * 112.40339 * 160.29636 * 16 14 13 18 18 C 1.54237 * 112.33169 * 61.98690 * 17 16 14 19 19 C 1.50552 * 108.48078 * 279.88102 * 18 17 16 20 20 H 1.08998 * 108.92394 * 333.50441 * 19 18 17 21 21 N 1.46901 * 108.83822 * 214.96076 * 19 18 17 22 22 C 1.46849 * 110.99685 * 71.88310 * 21 19 18 23 23 C 1.53041 * 109.52016 * 174.16233 * 22 21 19 24 24 C 1.53131 * 109.27753 * 59.18434 * 23 22 21 25 25 C 1.53115 * 109.15692 * 302.34234 * 24 23 22 26 26 C 1.46852 * 110.99963 * 307.67892 * 21 19 18 27 27 C 1.54072 * 112.41740 * 94.26571 * 19 18 17 28 28 C 1.50476 * 109.62992 * 120.97155 * 14 13 12 29 29 H 0.97004 * 119.99782 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99864 * 0.02562 * 11 9 7 31 31 H 1.08000 * 119.99986 * 0.02562 * 13 12 11 32 32 H 1.09000 * 108.88961 * 39.54336 * 16 14 13 33 33 H 1.08997 * 108.81778 * 280.99787 * 16 14 13 34 34 H 1.09004 * 108.89105 * 182.68605 * 17 16 14 35 35 H 1.09000 * 108.89669 * 301.27338 * 17 16 14 36 36 H 1.09001 * 109.62713 * 39.67199 * 18 17 16 37 37 H 1.08990 * 109.63244 * 160.25354 * 18 17 16 38 38 H 1.08993 * 109.46553 * 294.17613 * 22 21 19 39 39 H 1.08992 * 109.46110 * 54.15022 * 22 21 19 40 40 H 1.08994 * 109.50690 * 299.24448 * 23 22 21 41 41 H 1.09001 * 109.50217 * 179.11921 * 23 22 21 42 42 H 1.08993 * 109.52091 * 182.43810 * 24 23 22 43 43 H 1.08993 * 109.57173 * 62.27907 * 24 23 22 44 44 H 1.09003 * 109.50825 * 297.71340 * 25 24 23 45 45 H 1.09000 * 109.50220 * 177.59380 * 25 24 23 46 46 H 1.09000 * 109.45938 * 305.85190 * 26 21 19 47 47 H 1.09004 * 109.45977 * 65.82672 * 26 21 19 48 48 H 1.09002 * 108.81044 * 197.41850 * 27 19 18 49 49 H 1.08994 * 108.81287 * 79.13704 * 27 19 18 50 50 H 1.09003 * 108.87328 * 334.64500 * 28 14 13 51 51 H 1.08996 * 108.87617 * 93.18434 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3824 2.1072 -1.3948 5 1 1.4943 2.6200 0.8027 6 1 3.5864 1.4120 0.5920 7 6 2.0070 -1.2140 0.0005 8 1 3.0821 -1.2168 0.1024 9 6 1.3045 -2.4379 -0.1327 10 8 0.0866 -2.4441 -0.1334 11 7 1.9844 -3.5948 -0.2587 12 7 1.2901 -4.8046 -0.3898 13 6 1.9360 -5.9038 -0.5091 14 6 1.1893 -7.2052 -0.6495 15 1 0.1161 -7.0148 -0.6356 16 6 1.5639 -8.1458 0.5140 17 6 0.5811 -9.2009 0.7128 18 6 0.4545 -10.1230 -0.5171 19 6 -0.4173 -9.4407 -1.5374 20 1 -1.0925 -8.7560 -1.0242 21 7 -1.2141 -10.4577 -2.2366 22 6 -2.2604 -11.0003 -1.3607 23 6 -3.1585 -11.9457 -2.1618 24 6 -2.3094 -13.0822 -2.7383 25 6 -1.1978 -12.4878 -3.6075 26 6 -0.3566 -11.5267 -2.7645 27 6 0.4018 -8.6492 -2.5749 28 6 1.5718 -7.8703 -1.9440 29 1 -0.4850 0.8401 0.0004 30 1 2.9544 -3.5899 -0.2578 31 1 3.0160 -5.8983 -0.5081 32 1 1.6431 -7.5600 1.4298 33 1 2.5315 -8.6002 0.3012 34 1 0.8760 -9.8000 1.5743 35 1 -0.3888 -8.7464 0.9147 36 1 1.4420 -10.3061 -0.9406 37 1 -0.0009 -11.0679 -0.2209 38 1 -1.7986 -11.5475 -0.5390 39 1 -2.8595 -10.1822 -0.9608 40 1 -3.6315 -11.3960 -2.9756 41 1 -3.9256 -12.3603 -1.5078 42 1 -2.9374 -13.7341 -3.3455 43 1 -1.8675 -13.6568 -1.9244 44 1 -1.6399 -11.9466 -4.4440 45 1 -0.5640 -13.2896 -3.9863 46 1 0.4271 -11.0908 -3.3842 47 1 0.0962 -12.0714 -1.9361 48 1 -0.2583 -7.9440 -3.0799 49 1 0.8002 -9.3450 -3.3131 50 1 1.9072 -7.1075 -2.6467 51 1 2.3932 -8.5616 -1.7560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006947197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:52 Heat of formation + Delta-G solvation = -40.896209 kcal Electronic energy + Delta-G solvation = -27405.934701 eV Core-core repulsion = 23724.911383 eV Total energy + Delta-G solvation = -3681.023319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.15751 -39.67695 -38.88503 -37.00592 -34.98938 -34.63615 -33.53946 -32.34855 -31.66045 -30.48842 -28.53936 -26.13869 -26.00964 -24.08759 -23.63804 -22.81008 -21.56472 -21.34845 -20.58761 -19.65726 -19.28113 -17.77579 -17.64047 -17.22093 -16.40226 -16.00412 -15.95340 -15.68631 -15.20235 -15.11042 -14.92682 -14.85129 -14.70649 -14.52987 -14.03139 -13.95442 -13.91816 -13.38587 -13.25064 -13.06678 -13.01224 -12.83014 -12.71021 -12.56380 -12.13782 -12.06104 -12.02193 -11.81589 -11.64378 -11.57835 -11.47245 -11.41212 -11.23620 -11.08389 -10.99819 -10.87877 -10.80789 -9.97082 -9.42003 -9.07341 -8.42800 -7.07671 1.29402 1.38009 1.47310 1.57247 2.08674 2.36528 2.44719 2.96810 3.61673 3.62547 3.81427 3.84279 3.92362 4.02564 4.07420 4.15804 4.18749 4.32032 4.33238 4.37873 4.42726 4.47699 4.56133 4.60813 4.65576 4.72423 4.83995 4.88935 4.92379 4.98685 5.01276 5.09201 5.12725 5.16500 5.17209 5.19798 5.23912 5.26724 5.29057 5.31975 5.37130 5.39885 5.41424 5.51123 5.55277 5.60243 5.80036 6.04684 6.27852 6.31739 6.68999 7.02762 7.50962 8.42926 8.60034 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.026973 B = 0.002099 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.839554 B =13334.863882 C =13661.157120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.028 3.972 3 Si 1.011 2.989 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.566 4.566 8 H 0.094 0.906 9 C 0.546 3.454 10 O -0.617 6.617 11 N -0.605 5.605 12 N -0.280 5.280 13 C 0.049 3.951 14 C -0.025 4.025 15 H 0.060 0.940 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.135 4.135 19 C 0.089 3.911 20 H 0.058 0.942 21 N -0.548 5.548 22 C 0.054 3.946 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.116 4.116 26 C 0.051 3.949 27 C -0.099 4.099 28 C -0.099 4.099 29 H 0.281 0.719 30 H 0.381 0.619 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.041 0.959 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.055 0.945 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 -27.135 -4.051 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.190 4.190 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.602 4.602 8 H 0.113 0.887 9 C 0.355 3.645 10 O -0.502 6.502 11 N -0.351 5.351 12 N -0.084 5.084 13 C -0.166 4.166 14 C -0.046 4.046 15 H 0.078 0.922 16 C -0.138 4.138 17 C -0.149 4.149 18 C -0.174 4.174 19 C -0.019 4.019 20 H 0.076 0.924 21 N -0.272 5.272 22 C -0.074 4.074 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.154 4.154 26 C -0.077 4.077 27 C -0.137 4.137 28 C -0.138 4.138 29 H 0.091 0.909 30 H 0.219 0.781 31 H 0.139 0.861 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.209 -26.254 -4.388 26.710 hybrid contribution 1.467 0.516 0.720 1.713 sum 3.675 -25.738 -3.668 26.257 Atomic orbital electron populations 1.70192 1.10000 1.29716 1.33474 1.27177 0.95559 1.05419 0.90817 0.84829 0.78872 0.74006 0.79464 1.18457 1.19331 1.16692 1.20511 0.96076 0.90126 1.53534 0.88743 1.17448 0.87220 0.82351 0.77483 1.90596 1.16070 1.86477 1.57105 1.47313 1.07474 1.02906 1.77372 1.74027 1.30095 0.93785 1.10527 1.26314 0.98820 0.92775 0.98717 1.19789 0.98675 0.88805 0.97314 0.92184 1.20427 1.00759 0.95862 0.96714 1.20380 0.99163 0.96786 0.98572 1.21979 1.01418 0.98316 0.95652 1.21496 0.94235 0.92942 0.93271 0.92412 1.62089 1.14076 1.13749 1.37244 1.22084 0.93465 0.97636 0.94220 1.21577 0.97677 0.96287 0.99785 1.21560 0.97351 0.97224 0.99448 1.21595 0.97471 0.98183 0.98178 1.22172 0.95348 0.91966 0.98201 1.21822 0.96109 0.98152 0.97628 1.21280 0.98833 0.98936 0.94767 0.90896 0.78106 0.86137 0.93241 0.89302 0.90644 0.93669 0.89928 0.91366 0.94315 0.92115 0.92284 0.90805 0.91212 0.91924 0.92268 0.90367 0.90383 0.94076 0.93926 0.90243 0.92665 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -50.02 11.76 21.86 0.26 -49.76 16 2 C 0.03 1.58 5.49 85.35 0.47 2.05 16 3 Si 1.01 40.39 29.56 68.60 2.03 42.42 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.24 -8.91 7.11 99.48 0.71 -8.21 16 7 C -0.57 -32.76 9.31 23.61 0.22 -32.54 16 8 H 0.09 4.79 7.86 -2.91 -0.02 4.76 16 9 C 0.55 34.13 7.68 85.11 0.65 34.78 16 10 O -0.62 -44.89 15.24 -4.65 -0.07 -44.96 16 11 N -0.61 -30.76 6.24 -179.93 -1.12 -31.89 16 12 N -0.28 -13.22 10.93 -50.45 -0.55 -13.77 16 13 C 0.05 1.63 9.30 88.66 0.82 2.46 16 14 C -0.02 -0.64 2.27 -11.94 -0.03 -0.67 16 15 H 0.06 1.93 6.96 -2.39 -0.02 1.91 16 16 C -0.10 -1.97 4.67 28.74 0.13 -1.84 16 17 C -0.11 -1.97 5.27 28.74 0.15 -1.81 16 18 C -0.13 -2.08 3.80 30.22 0.11 -1.96 16 19 C 0.09 1.73 1.68 44.48 0.07 1.80 16 20 H 0.06 1.41 6.39 -2.39 -0.02 1.40 16 21 N -0.55 -10.07 4.55 -873.64 -3.98 -14.05 16 22 C 0.05 0.93 5.16 86.33 0.45 1.37 16 23 C -0.12 -1.68 6.09 30.65 0.19 -1.50 16 24 C -0.12 -1.43 6.00 30.68 0.18 -1.25 16 25 C -0.12 -1.49 6.09 30.64 0.19 -1.31 16 26 C 0.05 0.73 4.74 86.32 0.41 1.14 16 27 C -0.10 -2.02 5.39 31.32 0.17 -1.85 16 28 C -0.10 -2.02 4.88 30.14 0.15 -1.88 16 29 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 30 H 0.38 16.09 8.59 -213.31 -1.83 14.26 16 31 H 0.12 3.25 8.00 -2.91 -0.02 3.22 16 32 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16 33 H 0.09 1.32 7.46 -2.39 -0.02 1.30 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.04 0.97 7.47 -2.39 -0.02 0.95 16 36 H 0.08 1.08 6.96 -2.39 -0.02 1.07 16 37 H 0.07 1.00 5.36 -2.39 -0.01 0.99 16 38 H 0.04 0.62 6.64 -2.39 -0.02 0.60 16 39 H 0.06 1.18 7.96 -2.39 -0.02 1.16 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 1.09 6.18 -2.39 -0.01 1.08 16 47 H 0.04 0.55 6.62 -2.39 -0.02 0.53 16 48 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.37 6.06 -2.39 -0.01 1.35 16 50 H 0.05 1.27 7.70 -2.39 -0.02 1.25 16 51 H 0.09 1.35 6.62 -2.39 -0.02 1.34 16 Total: -1.00 -81.84 381.68 -0.01 -81.85 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -0.91 Total: 33.17 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.34 Total: -3.01 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -5.40 Total: -109.47 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -0.07 Total: -44.96 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -81.84 -0.01 -81.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006947197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.957 kcal (2) G-P(sol) polarization free energy of solvation -81.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds