Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33310 * 126.81829 * 2 1 4 4 N 1.28507 * 109.44267 * 180.25814 * 3 2 1 5 5 N 1.28721 * 110.63815 * 359.76570 * 4 3 2 6 6 H 0.96993 * 126.03142 * 179.97438 * 5 4 3 7 7 C 1.37007 * 126.81222 * 179.86590 * 2 1 3 8 8 C 1.47238 * 127.18637 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00440 * 359.70282 * 8 7 2 10 10 N 1.34776 * 119.99655 * 179.70932 * 8 7 2 11 11 C 1.46508 * 119.99898 * 174.61014 * 10 8 7 12 12 C 1.53001 * 109.46931 * 64.37119 * 11 10 8 13 13 N 1.46494 * 109.47086 * 55.03054 * 12 11 10 14 14 C 1.36938 * 119.99919 * 184.98225 * 13 12 11 15 15 H 1.08005 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00280 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99790 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47060 * 59.99917 * 18 16 14 20 20 H 1.48501 * 109.47130 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47108 * 300.00091 * 18 16 14 22 22 C 1.53000 * 109.46829 * 304.37230 * 11 10 8 23 23 C 1.53001 * 109.47273 * 299.99679 * 22 11 10 24 24 C 1.53001 * 109.47210 * 300.00635 * 23 22 11 25 25 C 1.53000 * 109.47521 * 59.99516 * 24 23 22 26 26 C 1.53001 * 109.46968 * 184.37015 * 11 10 8 27 27 H 1.08994 * 109.47290 * 299.99865 * 26 11 10 28 28 C 1.53001 * 109.46637 * 179.97438 * 26 11 10 29 29 H 1.09007 * 109.47170 * 270.13647 * 1 2 3 30 30 H 1.08996 * 109.46847 * 30.13317 * 1 2 3 31 31 H 1.09004 * 109.47285 * 150.13100 * 1 2 3 32 32 H 0.97000 * 120.00588 * 354.60593 * 10 8 7 33 33 H 1.08997 * 109.46845 * 175.03127 * 12 11 10 34 34 H 1.09006 * 109.47147 * 295.02932 * 12 11 10 35 35 H 0.97001 * 120.00295 * 4.97585 * 13 12 11 36 36 H 0.96995 * 119.99564 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46933 * 180.02562 * 22 11 10 38 38 H 1.08996 * 109.47363 * 59.99807 * 22 11 10 39 39 H 1.09000 * 109.46761 * 59.99932 * 23 22 11 40 40 H 1.08994 * 109.47328 * 180.02562 * 23 22 11 41 41 H 1.09002 * 109.47421 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.47118 * 299.99506 * 24 23 22 43 43 H 1.08996 * 109.47363 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.46933 * 59.99876 * 25 24 23 45 45 H 1.09002 * 109.47166 * 60.00547 * 28 26 11 46 46 H 1.09005 * 109.47069 * 179.97438 * 28 26 11 47 47 H 1.08994 * 109.47349 * 300.00047 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0672 0.0000 4 7 3.5323 0.6834 -0.0055 5 7 3.6056 -0.6017 -0.0043 6 1 4.4212 -1.1267 -0.0079 7 6 2.3280 -1.0969 0.0026 8 6 1.9221 -2.5122 0.0054 9 8 0.7420 -2.8065 0.0110 10 7 2.8583 -3.4817 0.0018 11 6 2.4591 -4.8860 0.1237 12 6 1.6278 -5.2876 -1.0963 13 7 2.3830 -4.9996 -2.3181 14 6 1.7987 -5.1816 -3.5431 15 1 0.7812 -5.5379 -3.6085 16 6 2.5140 -4.9082 -4.7009 17 7 3.7542 -4.4744 -4.6212 18 14 1.7172 -5.1572 -6.3719 19 1 0.5147 -4.2926 -6.4807 20 1 2.6843 -4.7975 -7.4400 21 1 1.3194 -6.5799 -6.5236 22 6 1.6246 -5.0706 1.3927 23 6 2.4559 -4.6690 2.6128 24 6 3.7049 -5.5493 2.6911 25 6 4.5394 -5.3647 1.4221 26 6 3.7081 -5.7663 0.2020 27 1 4.3025 -5.6348 -0.7020 28 6 3.2910 -7.2328 0.3300 29 1 -0.3634 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8912 -0.5118 32 1 3.7965 -3.2497 -0.0816 33 1 1.4053 -6.3536 -1.0495 34 1 0.6960 -4.7220 -1.1033 35 1 3.2969 -4.6798 -2.2594 36 1 4.2542 -4.2837 -5.4302 37 1 1.3279 -6.1155 1.4837 38 1 0.7349 -4.4434 1.3369 39 1 2.7530 -3.6242 2.5220 40 1 1.8616 -4.8009 3.5168 41 1 4.2974 -5.2629 3.5600 42 1 3.4079 -6.5941 2.7819 43 1 5.4289 -5.9922 1.4777 44 1 4.8364 -4.3198 1.3313 45 1 2.6986 -7.5193 -0.5390 46 1 4.1808 -7.8601 0.3854 47 1 2.6968 -7.3640 1.2342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753533041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = 57.749926 kcal Electronic energy + Delta-G solvation = -29380.667037 eV Core-core repulsion = 25600.380992 eV Total energy + Delta-G solvation = -3780.286045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.31333 -40.70536 -38.13321 -34.84159 -34.22002 -33.25125 -32.38403 -31.98746 -31.08072 -29.71933 -27.89181 -26.54154 -25.13786 -24.12772 -23.00376 -22.68204 -21.81886 -20.78378 -20.28119 -18.86280 -18.35482 -17.25110 -16.67015 -16.40893 -15.64739 -15.46156 -14.85361 -14.77338 -14.41923 -13.89957 -13.75671 -13.53366 -13.32392 -13.15495 -12.98591 -12.90722 -12.62993 -12.44958 -12.13701 -11.93333 -11.78204 -11.73716 -11.50829 -11.27754 -11.10434 -10.97899 -10.85524 -10.77175 -10.51600 -10.47079 -10.20462 -10.08073 -9.98445 -9.68550 -9.46424 -9.22006 -8.83547 -8.71863 -6.89750 -5.78917 -3.04905 0.97638 2.32181 2.46800 3.10470 3.30931 3.43637 3.48121 3.49177 4.31213 4.56166 4.61205 4.73910 4.76085 4.80178 4.95136 5.09137 5.15607 5.21821 5.39386 5.42520 5.56265 5.57657 5.68629 5.71809 5.72982 5.76768 5.78330 5.92722 5.95654 5.99331 6.03713 6.11102 6.18198 6.19091 6.29505 6.35069 6.41787 6.46506 6.50146 6.58177 6.62779 6.86067 6.97171 7.58617 7.70378 8.25023 8.31508 8.40808 9.52467 10.09256 10.44272 11.44268 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.008655 B = 0.006175 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.458485 B = 4533.461658 C = 6608.341634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.055 3.945 3 N -0.273 5.273 4 N -0.052 5.052 5 N -0.374 5.374 6 H 0.449 0.551 7 C -0.059 4.059 8 C 0.603 3.397 9 O -0.504 6.504 10 N -0.702 5.702 11 C 0.184 3.816 12 C 0.139 3.861 13 N -0.724 5.724 14 C -0.230 4.230 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.938 5.938 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.115 4.115 26 C -0.091 4.091 27 H 0.086 0.914 28 C -0.145 4.145 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.379 0.621 36 H 0.254 0.746 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 0.652 16.539 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.140 5.140 4 N -0.034 5.034 5 N -0.101 5.101 6 H 0.296 0.704 7 C -0.193 4.193 8 C 0.386 3.614 9 O -0.377 6.377 10 N -0.352 5.352 11 C 0.099 3.901 12 C 0.011 3.989 13 N -0.368 5.368 14 C -0.362 4.362 15 H 0.086 0.914 16 C -0.210 4.210 17 N -0.587 5.587 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.171 4.171 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.152 4.152 26 C -0.110 4.110 27 H 0.104 0.896 28 C -0.203 4.203 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.223 0.777 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.213 0.787 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.595 1.744 16.422 16.525 hybrid contribution 0.673 -1.128 -1.219 1.792 sum 1.268 0.616 15.203 15.268 Atomic orbital electron populations 1.20300 0.84943 1.04602 1.03396 1.22278 0.98579 0.86987 1.00669 1.74887 0.95242 1.26142 1.17710 1.78135 1.16043 0.92375 1.16831 1.45418 1.08910 1.06951 1.48802 0.70431 1.22300 0.84759 0.97001 1.15251 1.16523 0.86140 0.81741 0.76956 1.90761 1.16529 1.81395 1.49044 1.45783 1.08779 1.06659 1.73985 1.20630 0.95014 0.78590 0.95914 1.21184 0.95011 0.97645 0.85104 1.42172 1.14271 1.80297 1.00053 1.19175 0.96921 1.36344 0.83737 0.91366 1.24666 0.96313 1.02427 0.97614 1.69620 1.09414 1.52230 1.27442 0.86291 0.78132 0.77816 0.84127 1.21346 1.21806 1.21333 1.21961 0.99503 1.02733 0.92861 1.21451 0.96370 0.99400 0.97837 1.21581 0.96548 1.00436 0.97188 1.21599 0.98144 1.00752 0.94724 1.21278 0.95457 0.95638 0.98619 0.89602 1.21918 1.01467 0.94374 1.02493 0.90281 0.90530 0.88477 0.77656 0.95582 0.93646 0.78695 0.93669 0.90730 0.89486 0.92637 0.92353 0.92632 0.91538 0.91812 0.92719 0.91167 0.92829 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 9.93 36.01 0.36 -0.60 16 2 C 0.05 0.83 7.29 -82.40 -0.60 0.23 16 3 N -0.27 -4.37 12.35 33.51 0.41 -3.96 16 4 N -0.05 -0.78 13.35 60.35 0.81 0.03 16 5 N -0.37 -4.71 6.98 33.31 0.23 -4.47 16 6 H 0.45 4.00 8.33 -190.33 -1.59 2.41 16 7 C -0.06 -0.87 7.17 -82.33 -0.59 -1.46 16 8 C 0.60 9.43 7.14 -12.60 -0.09 9.34 16 9 O -0.50 -9.00 11.28 5.26 0.06 -8.94 16 10 N -0.70 -9.73 3.49 -48.72 -0.17 -9.90 16 11 C 0.18 2.65 0.09 -131.81 -0.01 2.63 16 12 C 0.14 2.68 4.72 -4.04 -0.02 2.66 16 13 N -0.72 -17.12 5.19 -59.91 -0.31 -17.43 16 14 C -0.23 -6.32 9.99 -15.06 -0.15 -6.47 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.94 -27.47 13.06 55.49 0.72 -26.75 16 18 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C -0.13 -1.69 4.18 -26.73 -0.11 -1.80 16 23 C -0.11 -1.20 5.77 -26.73 -0.15 -1.35 16 24 C -0.12 -1.13 5.65 -26.73 -0.15 -1.28 16 25 C -0.11 -1.16 5.28 -26.73 -0.14 -1.30 16 26 C -0.09 -1.18 2.16 -90.62 -0.20 -1.37 16 27 H 0.09 1.33 7.08 -51.93 -0.37 0.96 16 28 C -0.15 -1.81 8.15 37.16 0.30 -1.50 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 1.40 6.62 -51.93 -0.34 1.05 16 32 H 0.39 4.61 6.76 -40.82 -0.28 4.34 16 33 H 0.03 0.51 6.18 -51.93 -0.32 0.19 16 34 H 0.05 0.99 6.45 -51.93 -0.33 0.65 16 35 H 0.38 9.21 6.45 -40.82 -0.26 8.94 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 38 H 0.09 1.28 6.04 -51.93 -0.31 0.97 16 39 H 0.05 0.62 7.53 -51.93 -0.39 0.23 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.51 6.95 -51.93 -0.36 0.15 16 45 H 0.07 1.03 6.32 -51.93 -0.33 0.71 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.63 4.80 -51.93 -0.25 0.38 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -32.41 356.93 -7.43 -39.84 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.88 Total: 11.49 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.65 Total: -2.78 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 1.70 Total: -62.48 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.06 Total: -8.94 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.41 -7.43 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753533041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.589 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds