Wall clock time and date at job start Fri Apr 10 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33310 * 126.81829 * 2 1 4 4 N 1.28507 * 109.44267 * 180.25814 * 3 2 1 5 5 N 1.28721 * 110.63815 * 359.76570 * 4 3 2 6 6 H 0.96993 * 126.03142 * 179.97438 * 5 4 3 7 7 C 1.37007 * 126.81222 * 179.86590 * 2 1 3 8 8 C 1.47238 * 127.18637 * 0.02562 * 7 2 1 9 9 O 1.21621 * 120.00440 * 359.70282 * 8 7 2 10 10 N 1.34776 * 119.99655 * 179.70932 * 8 7 2 11 11 C 1.46508 * 119.99898 * 174.61014 * 10 8 7 12 12 C 1.53001 * 109.46931 * 64.37119 * 11 10 8 13 13 N 1.46494 * 109.47086 * 55.03054 * 12 11 10 14 14 C 1.36938 * 119.99919 * 184.98225 * 13 12 11 15 15 H 1.08005 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00280 * 179.97438 * 14 13 12 17 17 N 1.31625 * 119.99790 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47060 * 59.99917 * 18 16 14 20 20 H 1.48501 * 109.47130 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47108 * 300.00091 * 18 16 14 22 22 C 1.53000 * 109.46829 * 304.37230 * 11 10 8 23 23 C 1.53001 * 109.47273 * 299.99679 * 22 11 10 24 24 C 1.53001 * 109.47210 * 300.00635 * 23 22 11 25 25 C 1.53000 * 109.47521 * 59.99516 * 24 23 22 26 26 C 1.53001 * 109.46968 * 184.37015 * 11 10 8 27 27 H 1.08994 * 109.47290 * 299.99865 * 26 11 10 28 28 C 1.53001 * 109.46637 * 179.97438 * 26 11 10 29 29 H 1.09007 * 109.47170 * 270.13647 * 1 2 3 30 30 H 1.08996 * 109.46847 * 30.13317 * 1 2 3 31 31 H 1.09004 * 109.47285 * 150.13100 * 1 2 3 32 32 H 0.97000 * 120.00588 * 354.60593 * 10 8 7 33 33 H 1.08997 * 109.46845 * 175.03127 * 12 11 10 34 34 H 1.09006 * 109.47147 * 295.02932 * 12 11 10 35 35 H 0.97001 * 120.00295 * 4.97585 * 13 12 11 36 36 H 0.96995 * 119.99564 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.46933 * 180.02562 * 22 11 10 38 38 H 1.08996 * 109.47363 * 59.99807 * 22 11 10 39 39 H 1.09000 * 109.46761 * 59.99932 * 23 22 11 40 40 H 1.08994 * 109.47328 * 180.02562 * 23 22 11 41 41 H 1.09002 * 109.47421 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.47118 * 299.99506 * 24 23 22 43 43 H 1.08996 * 109.47363 * 180.02562 * 25 24 23 44 44 H 1.09005 * 109.46933 * 59.99876 * 25 24 23 45 45 H 1.09002 * 109.47166 * 60.00547 * 28 26 11 46 46 H 1.09005 * 109.47069 * 179.97438 * 28 26 11 47 47 H 1.08994 * 109.47349 * 300.00047 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0672 0.0000 4 7 3.5323 0.6834 -0.0055 5 7 3.6056 -0.6017 -0.0043 6 1 4.4212 -1.1267 -0.0079 7 6 2.3280 -1.0969 0.0026 8 6 1.9221 -2.5122 0.0054 9 8 0.7420 -2.8065 0.0110 10 7 2.8583 -3.4817 0.0018 11 6 2.4591 -4.8860 0.1237 12 6 1.6278 -5.2876 -1.0963 13 7 2.3830 -4.9996 -2.3181 14 6 1.7987 -5.1816 -3.5431 15 1 0.7812 -5.5379 -3.6085 16 6 2.5140 -4.9082 -4.7009 17 7 3.7542 -4.4744 -4.6212 18 14 1.7172 -5.1572 -6.3719 19 1 0.5147 -4.2926 -6.4807 20 1 2.6843 -4.7975 -7.4400 21 1 1.3194 -6.5799 -6.5236 22 6 1.6246 -5.0706 1.3927 23 6 2.4559 -4.6690 2.6128 24 6 3.7049 -5.5493 2.6911 25 6 4.5394 -5.3647 1.4221 26 6 3.7081 -5.7663 0.2020 27 1 4.3025 -5.6348 -0.7020 28 6 3.2910 -7.2328 0.3300 29 1 -0.3634 0.0024 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8912 -0.5118 32 1 3.7965 -3.2497 -0.0816 33 1 1.4053 -6.3536 -1.0495 34 1 0.6960 -4.7220 -1.1033 35 1 3.2969 -4.6798 -2.2594 36 1 4.2542 -4.2837 -5.4302 37 1 1.3279 -6.1155 1.4837 38 1 0.7349 -4.4434 1.3369 39 1 2.7530 -3.6242 2.5220 40 1 1.8616 -4.8009 3.5168 41 1 4.2974 -5.2629 3.5600 42 1 3.4079 -6.5941 2.7819 43 1 5.4289 -5.9922 1.4777 44 1 4.8364 -4.3198 1.3313 45 1 2.6986 -7.5193 -0.5390 46 1 4.1808 -7.8601 0.3854 47 1 2.6968 -7.3640 1.2342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753533041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:08 Heat of formation + Delta-G solvation = 35.062991 kcal Electronic energy + Delta-G solvation = -29381.650816 eV Core-core repulsion = 25600.380992 eV Total energy + Delta-G solvation = -3781.269824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.46840 -41.87575 -39.31066 -36.44717 -35.47381 -34.56143 -33.69509 -33.17773 -32.47050 -31.12940 -28.98546 -27.79234 -26.65792 -25.28197 -24.62487 -23.80385 -22.96862 -21.94362 -21.45922 -20.03116 -19.43646 -19.23849 -17.79371 -17.57160 -16.94554 -16.68579 -16.32300 -16.01718 -15.96776 -15.20146 -14.98943 -14.87182 -14.78416 -14.37970 -14.16875 -13.99756 -13.72250 -13.56966 -13.40029 -13.14450 -13.06846 -12.93633 -12.84242 -12.73774 -12.46333 -12.33503 -12.25571 -12.13506 -11.93744 -11.79100 -11.65194 -11.39631 -11.22250 -10.96225 -10.88004 -10.56548 -10.40138 -9.96106 -8.92019 -7.95842 -5.19879 -0.19505 1.13064 1.40792 1.43949 1.45684 1.51288 1.92267 2.09229 2.54706 3.19533 3.37775 3.49198 3.63380 3.77791 3.81653 3.87661 3.94565 4.06240 4.22154 4.40142 4.46610 4.51491 4.56582 4.61959 4.72712 4.75639 4.77348 4.84772 4.90269 4.91726 4.99834 5.12059 5.15421 5.18449 5.24390 5.28830 5.29581 5.40905 5.45410 5.47821 5.51755 5.56551 5.62242 5.71396 6.27295 6.41798 7.05162 7.13590 7.35569 8.11241 8.37896 9.26762 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.008655 B = 0.006175 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.458485 B = 4533.461658 C = 6608.341634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.045 3.955 3 N -0.293 5.293 4 N -0.056 5.056 5 N -0.352 5.352 6 H 0.465 0.535 7 C -0.068 4.068 8 C 0.602 3.398 9 O -0.530 6.530 10 N -0.694 5.694 11 C 0.192 3.808 12 C 0.139 3.861 13 N -0.726 5.726 14 C -0.236 4.236 15 H 0.064 0.936 16 C -0.069 4.069 17 N -0.963 5.963 18 Si 0.962 3.038 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.279 1.279 22 C -0.126 4.126 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.086 4.086 27 H 0.058 0.942 28 C -0.143 4.143 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.401 0.599 33 H 0.028 0.972 34 H 0.020 0.980 35 H 0.376 0.624 36 H 0.249 0.751 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 0.215 18.208 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.095 4.095 3 N -0.159 5.159 4 N -0.038 5.038 5 N -0.082 5.082 6 H 0.315 0.685 7 C -0.203 4.203 8 C 0.385 3.615 9 O -0.405 6.405 10 N -0.344 5.344 11 C 0.106 3.894 12 C 0.012 3.988 13 N -0.369 5.369 14 C -0.369 4.369 15 H 0.082 0.918 16 C -0.261 4.261 17 N -0.614 5.614 18 Si 0.792 3.208 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.205 1.205 22 C -0.165 4.165 23 C -0.145 4.145 24 C -0.152 4.152 25 C -0.147 4.147 26 C -0.105 4.105 27 H 0.076 0.924 28 C -0.200 4.200 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.236 0.764 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.209 0.791 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.346 1.291 18.118 18.213 hybrid contribution 0.405 -1.025 -1.725 2.047 sum 1.750 0.266 16.393 16.488 Atomic orbital electron populations 1.20326 0.83820 1.04276 1.04517 1.22676 0.99580 0.86989 1.00265 1.74881 0.95611 1.26648 1.18782 1.78071 1.15823 0.93044 1.16822 1.45381 1.09055 1.06465 1.47301 0.68549 1.22182 0.85496 0.96503 1.16085 1.16658 0.85974 0.82244 0.76587 1.90756 1.17619 1.81848 1.50249 1.45716 1.09189 1.06253 1.73256 1.20517 0.95472 0.78999 0.94378 1.21258 0.94575 0.97217 0.85772 1.42224 1.14268 1.79967 1.00431 1.19475 0.96778 1.35237 0.85369 0.91834 1.25330 0.96991 1.03225 1.00569 1.69744 1.10377 1.53583 1.27696 0.85386 0.77092 0.77934 0.80425 1.21310 1.22061 1.20471 1.21895 0.98795 1.02831 0.92975 1.21419 0.96783 0.99414 0.96872 1.21564 0.95822 1.00520 0.97297 1.21588 0.98126 1.01615 0.93409 1.21211 0.94535 0.95652 0.99106 0.92406 1.21897 1.01947 0.94132 1.02009 0.88442 0.89314 0.90173 0.76390 0.95472 0.96149 0.79137 0.94225 0.89960 0.91598 0.93053 0.91048 0.90653 0.90873 0.90423 0.91788 0.94118 0.91429 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 9.93 71.24 0.71 -1.12 16 2 C 0.05 1.36 7.29 42.05 0.31 1.67 16 3 N -0.29 -9.18 12.35 -47.89 -0.59 -9.78 16 4 N -0.06 -1.60 13.35 37.02 0.49 -1.11 16 5 N -0.35 -8.49 6.98 -48.52 -0.34 -8.83 16 6 H 0.46 7.57 8.33 -219.90 -1.83 5.74 16 7 C -0.07 -1.97 7.17 40.41 0.29 -1.68 16 8 C 0.60 18.78 7.14 86.61 0.62 19.40 16 9 O -0.53 -19.28 11.28 -4.10 -0.05 -19.33 16 10 N -0.69 -18.90 3.49 -426.31 -1.49 -20.39 16 11 C 0.19 5.44 0.09 3.60 0.00 5.44 16 12 C 0.14 5.49 4.72 86.38 0.41 5.90 16 13 N -0.73 -35.02 5.19 -343.45 -1.78 -36.80 16 14 C -0.24 -13.15 9.99 84.03 0.84 -12.32 16 15 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 17 N -0.96 -56.99 13.06 21.65 0.28 -56.70 16 18 Si 0.96 46.64 29.55 68.60 2.03 48.66 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 C -0.13 -3.09 4.18 30.59 0.13 -2.96 16 23 C -0.11 -1.98 5.77 30.59 0.18 -1.81 16 24 C -0.11 -1.73 5.65 30.59 0.17 -1.56 16 25 C -0.11 -1.90 5.28 30.59 0.16 -1.73 16 26 C -0.09 -2.12 2.16 -10.79 -0.02 -2.14 16 27 H 0.06 1.77 7.08 -2.39 -0.02 1.76 16 28 C -0.14 -3.34 8.15 71.98 0.59 -2.76 16 29 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.35 6.62 -2.39 -0.02 2.34 16 32 H 0.40 9.07 6.76 -92.71 -0.63 8.44 16 33 H 0.03 1.09 6.18 -2.39 -0.01 1.07 16 34 H 0.02 0.92 6.45 -2.38 -0.02 0.91 16 35 H 0.38 18.56 6.45 -92.71 -0.60 17.96 16 36 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.08 1.86 6.43 -2.38 -0.02 1.85 16 38 H 0.07 1.93 6.04 -2.39 -0.01 1.92 16 39 H 0.05 1.01 7.53 -2.39 -0.02 0.99 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.05 6.43 -2.38 -0.02 1.03 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 0.99 6.95 -2.38 -0.02 0.98 16 45 H 0.04 1.19 6.32 -2.39 -0.02 1.17 16 46 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 47 H 0.08 1.50 4.80 -2.39 -0.01 1.48 16 Total: -1.00 -70.18 356.93 1.38 -68.80 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -2.01 Total: 34.57 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 4.84 Total: 0.90 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -3.42 Total: -133.60 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -70.18 1.38 -68.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753533041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.860 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds