Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.53000 * 109.46981 * 240.00016 * 2 1 3 5 5 C 1.52997 * 109.46738 * 175.00036 * 4 2 1 6 6 N 1.46507 * 109.46974 * 179.97438 * 5 4 2 7 7 C 1.36937 * 119.99771 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00413 * 0.02562 * 7 6 5 9 9 C 1.38820 * 119.99741 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00164 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99937 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47171 * 89.99899 * 11 9 7 13 13 H 1.48494 * 109.47111 * 210.00359 * 11 9 7 14 14 H 1.48501 * 109.47104 * 329.99846 * 11 9 7 15 15 N 1.46505 * 109.46976 * 120.00208 * 2 1 3 16 16 C 1.34776 * 119.99672 * 274.99847 * 15 2 1 17 17 O 1.21275 * 120.00286 * 0.02562 * 16 15 2 18 18 C 1.50702 * 119.99622 * 179.97438 * 16 15 2 19 19 C 1.50702 * 109.46950 * 180.02562 * 18 16 15 20 20 N 1.30829 * 125.96102 * 89.97979 * 19 18 16 21 21 C 1.33239 * 109.82920 * 179.97438 * 20 19 18 22 22 C 1.50707 * 125.52839 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.49676 * 188.76391 * 22 21 20 24 24 C 1.52993 * 117.50123 * 120.10414 * 22 21 20 25 25 N 1.30714 * 108.94945 * 359.97438 * 21 20 19 26 26 N 1.34428 * 125.96139 * 269.94904 * 19 18 16 27 27 C 1.46505 * 126.82137 * 0.02562 * 26 19 18 28 28 H 1.08998 * 109.46755 * 60.00099 * 1 2 3 29 29 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46942 * 299.99464 * 1 2 3 31 31 H 1.09004 * 109.47216 * 295.00059 * 4 2 1 32 32 H 1.08997 * 109.47144 * 54.99933 * 4 2 1 33 33 H 1.08992 * 109.47655 * 299.99872 * 5 4 2 34 34 H 1.09006 * 109.47364 * 60.00247 * 5 4 2 35 35 H 0.96993 * 119.99799 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99981 * 180.02562 * 10 9 7 37 37 H 0.97004 * 119.99846 * 94.99748 * 15 2 1 38 38 H 1.09003 * 109.47120 * 60.00154 * 18 16 15 39 39 H 1.08998 * 109.47492 * 300.00190 * 18 16 15 40 40 H 1.09001 * 115.54690 * 334.42838 * 22 21 20 41 41 H 1.08999 * 117.49922 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.49232 * 145.01679 * 23 22 21 43 43 H 1.08995 * 117.49902 * 214.98202 * 24 22 21 44 44 H 1.09002 * 117.49700 * 359.97241 * 24 22 21 45 45 H 1.09002 * 109.47241 * 270.01869 * 27 26 19 46 46 H 1.08996 * 109.47088 * 30.02379 * 27 26 19 47 47 H 1.09003 * 109.47136 * 150.02400 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0532 -1.3044 -2.5095 7 6 5.3953 -1.3404 -2.7794 8 1 6.0937 -0.8596 -2.1105 9 6 5.8580 -1.9948 -3.9128 10 7 7.1479 -2.0299 -4.1720 11 14 4.6501 -2.8269 -5.0694 12 1 4.2139 -1.8602 -6.1088 13 1 5.3073 -3.9893 -5.7191 14 1 3.4686 -3.2929 -4.2998 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8582 1.1583 2.4117 18 6 2.6488 -0.7289 3.5877 19 6 2.6990 0.2393 4.7415 20 7 1.7298 0.4774 5.5874 21 6 2.1204 1.3886 6.4775 22 6 1.2814 1.9228 7.6097 23 6 1.8342 3.1114 8.3989 24 6 1.8035 1.7187 9.0333 25 7 3.3494 1.7442 6.2095 26 7 3.7478 1.0085 5.0814 27 6 5.0481 1.0673 4.4090 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9995 -1.0728 -0.4259 35 1 3.4259 -1.7358 -3.1105 36 1 7.4712 -2.4868 -4.9642 37 1 2.2490 -1.6319 1.1526 38 1 3.6480 -1.1215 3.3986 39 1 1.9759 -1.5507 3.8326 40 1 0.2030 1.8774 7.4578 41 1 2.8049 3.5067 8.0994 42 1 1.1193 3.8476 8.7664 43 1 1.0686 1.5392 9.8179 44 1 2.7536 1.1976 9.1510 45 1 5.7207 0.3339 4.8539 46 1 4.9195 0.8468 3.3494 47 1 5.4716 2.0652 4.5237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754024776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = 84.736436 kcal Electronic energy + Delta-G solvation = -26511.730243 eV Core-core repulsion = 22732.614421 eV Total energy + Delta-G solvation = -3779.115822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.36405 -39.92607 -37.51127 -36.74016 -34.58420 -34.07860 -33.00770 -31.95381 -30.98369 -28.96741 -28.32116 -27.42897 -24.09323 -23.94402 -22.70102 -22.22981 -21.34562 -20.72326 -20.41861 -19.96660 -17.80048 -17.39276 -17.25619 -16.33230 -15.98815 -15.62646 -15.47074 -15.01381 -14.64129 -14.30115 -14.18294 -13.83516 -13.67116 -13.58635 -13.42643 -13.37650 -12.92354 -12.67024 -12.41425 -12.31540 -12.10530 -11.91058 -11.74175 -11.58394 -11.31689 -11.15701 -10.95583 -10.81335 -10.80899 -10.58386 -10.20665 -10.15585 -10.10788 -9.78402 -9.65946 -9.34967 -9.17911 -8.95347 -7.30595 -5.83125 -3.19286 1.35934 2.08249 2.44690 2.51783 3.08445 3.31611 3.34704 3.40478 3.56485 3.71085 4.12452 4.23159 4.52902 4.54943 4.56906 4.68283 4.68992 4.76891 4.89379 4.90500 4.98777 5.09988 5.19058 5.20627 5.32658 5.33477 5.43743 5.51482 5.57093 5.58054 5.72790 5.79861 5.85792 5.85985 5.88272 6.07690 6.13236 6.17296 6.26831 6.37388 6.57821 6.60760 6.67096 7.35329 7.92277 7.96369 8.05633 8.35633 9.14505 9.86844 10.06303 11.35128 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.002278 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.734607 B =12290.678648 C =13161.799785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.090 0.910 4 C -0.140 4.140 5 C 0.158 3.842 6 N -0.757 5.757 7 C -0.246 4.246 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.887 3.113 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.716 5.716 16 C 0.520 3.480 17 O -0.530 6.530 18 C -0.069 4.069 19 C 0.303 3.697 20 N -0.528 5.528 21 C 0.253 3.747 22 C -0.069 4.069 23 C -0.161 4.161 24 C -0.160 4.160 25 N -0.315 5.315 26 N -0.370 5.370 27 C 0.093 3.907 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.404 0.596 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 3.595 22.303 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.108 0.892 4 C -0.178 4.178 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.376 4.376 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.581 5.581 11 Si 0.717 3.283 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.368 5.368 16 C 0.304 3.696 17 O -0.406 6.406 18 C -0.111 4.111 19 C 0.026 3.974 20 N -0.256 5.256 21 C -0.028 4.028 22 C -0.090 4.090 23 C -0.199 4.199 24 C -0.198 4.198 25 N -0.143 5.143 26 N -0.160 5.160 27 C -0.049 4.049 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.070 0.930 37 H 0.239 0.761 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.106 4.866 22.691 26.175 hybrid contribution -0.390 -1.271 -1.350 1.895 sum -12.496 3.596 21.340 24.990 Atomic orbital electron populations 1.22167 0.95244 1.02112 1.02492 1.20971 0.93724 0.97689 0.83365 0.89198 1.22127 0.98062 1.00910 0.96701 1.20609 0.90143 0.95957 0.90172 1.42718 1.05342 1.66069 1.26162 1.19039 0.82205 1.29521 1.06862 0.89315 1.24700 0.95641 1.00643 0.98250 1.69700 1.11741 1.48135 1.28523 0.86519 0.80811 0.79461 0.81517 1.21055 1.21707 1.20362 1.46039 1.67106 1.14307 1.09378 1.20035 0.78245 0.87327 0.84031 1.90769 1.49338 1.15766 1.84685 1.20212 1.05914 0.96674 0.88341 1.23241 0.84134 0.93965 0.96034 1.70193 1.28783 1.19837 1.06740 1.23014 0.90173 0.93687 0.95936 1.20038 0.97759 1.03566 0.87650 1.23045 1.03481 0.91140 1.02219 1.23034 1.03119 0.99816 0.93853 1.77921 1.15100 1.18500 1.02795 1.50078 1.13270 1.30316 1.22303 1.22021 0.80476 1.05155 0.97229 0.91519 0.92427 0.92218 0.91269 0.90195 0.95608 0.95642 0.80674 0.93008 0.76135 0.86219 0.84970 0.85207 0.87847 0.87879 0.87799 0.88606 0.89875 0.88807 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 2 C 0.15 1.73 2.57 -67.93 -0.17 1.55 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 4 C -0.14 -1.83 4.87 -26.73 -0.13 -1.96 16 5 C 0.16 2.79 6.15 -4.04 -0.02 2.77 16 6 N -0.76 -17.16 5.41 -59.90 -0.32 -17.48 16 7 C -0.25 -6.80 10.47 -15.06 -0.16 -6.95 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 10 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 11 Si 0.89 21.51 27.73 -169.99 -4.71 16.79 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 15 N -0.72 -7.35 4.53 -53.80 -0.24 -7.59 16 16 C 0.52 6.09 7.79 -10.98 -0.09 6.01 16 17 O -0.53 -8.56 15.70 5.56 0.09 -8.47 16 18 C -0.07 -0.61 5.82 -29.03 -0.17 -0.78 16 19 C 0.30 3.81 6.48 -155.70 -1.01 2.81 16 20 N -0.53 -7.61 11.19 -8.16 -0.09 -7.70 16 21 C 0.25 3.46 7.69 -156.85 -1.21 2.26 16 22 C -0.07 -0.71 6.33 -91.77 -0.58 -1.29 16 23 C -0.16 -1.33 10.14 -26.69 -0.27 -1.60 16 24 C -0.16 -1.25 10.24 -26.70 -0.27 -1.53 16 25 N -0.31 -4.38 12.24 32.42 0.40 -3.98 16 26 N -0.37 -4.59 4.04 -65.09 -0.26 -4.85 16 27 C 0.09 0.79 11.16 59.85 0.67 1.46 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.03 0.44 7.75 -51.93 -0.40 0.04 16 35 H 0.36 7.93 5.53 -40.82 -0.23 7.71 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.40 3.23 8.60 -40.82 -0.35 2.88 16 38 H 0.12 0.70 7.76 -51.93 -0.40 0.29 16 39 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.10 0.97 7.88 -51.93 -0.41 0.56 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.73 7.72 -51.93 -0.40 0.33 16 47 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -37.46 395.25 -9.25 -46.71 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.67 Total: 7.23 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -3.16 Total: 1.41 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: 0.25 Total: -69.62 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.46 -9.25 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754024776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.447 kcal (2) G-P(sol) polarization free energy of solvation -37.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds