Wall clock time and date at job start Fri Apr 10 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47244 * 2 1 4 4 C 1.53000 * 109.46981 * 240.00016 * 2 1 3 5 5 C 1.52997 * 109.46738 * 175.00036 * 4 2 1 6 6 N 1.46507 * 109.46974 * 179.97438 * 5 4 2 7 7 C 1.36937 * 119.99771 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00413 * 0.02562 * 7 6 5 9 9 C 1.38820 * 119.99741 * 180.02562 * 7 6 5 10 10 N 1.31614 * 120.00164 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99937 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47171 * 89.99899 * 11 9 7 13 13 H 1.48494 * 109.47111 * 210.00359 * 11 9 7 14 14 H 1.48501 * 109.47104 * 329.99846 * 11 9 7 15 15 N 1.46505 * 109.46976 * 120.00208 * 2 1 3 16 16 C 1.34776 * 119.99672 * 274.99847 * 15 2 1 17 17 O 1.21275 * 120.00286 * 0.02562 * 16 15 2 18 18 C 1.50702 * 119.99622 * 179.97438 * 16 15 2 19 19 C 1.50702 * 109.46950 * 180.02562 * 18 16 15 20 20 N 1.30829 * 125.96102 * 89.97979 * 19 18 16 21 21 C 1.33239 * 109.82920 * 179.97438 * 20 19 18 22 22 C 1.50707 * 125.52839 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.49676 * 188.76391 * 22 21 20 24 24 C 1.52993 * 117.50123 * 120.10414 * 22 21 20 25 25 N 1.30714 * 108.94945 * 359.97438 * 21 20 19 26 26 N 1.34428 * 125.96139 * 269.94904 * 19 18 16 27 27 C 1.46505 * 126.82137 * 0.02562 * 26 19 18 28 28 H 1.08998 * 109.46755 * 60.00099 * 1 2 3 29 29 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46942 * 299.99464 * 1 2 3 31 31 H 1.09004 * 109.47216 * 295.00059 * 4 2 1 32 32 H 1.08997 * 109.47144 * 54.99933 * 4 2 1 33 33 H 1.08992 * 109.47655 * 299.99872 * 5 4 2 34 34 H 1.09006 * 109.47364 * 60.00247 * 5 4 2 35 35 H 0.96993 * 119.99799 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99981 * 180.02562 * 10 9 7 37 37 H 0.97004 * 119.99846 * 94.99748 * 15 2 1 38 38 H 1.09003 * 109.47120 * 60.00154 * 18 16 15 39 39 H 1.08998 * 109.47492 * 300.00190 * 18 16 15 40 40 H 1.09001 * 115.54690 * 334.42838 * 22 21 20 41 41 H 1.08999 * 117.49922 * 359.97438 * 23 22 21 42 42 H 1.09000 * 117.49232 * 145.01679 * 23 22 21 43 43 H 1.08995 * 117.49902 * 214.98202 * 24 22 21 44 44 H 1.09002 * 117.49700 * 359.97241 * 24 22 21 45 45 H 1.09002 * 109.47241 * 270.01869 * 27 26 19 46 46 H 1.08996 * 109.47088 * 30.02379 * 27 26 19 47 47 H 1.09003 * 109.47136 * 150.02400 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0532 -1.3044 -2.5095 7 6 5.3953 -1.3404 -2.7794 8 1 6.0937 -0.8596 -2.1105 9 6 5.8580 -1.9948 -3.9128 10 7 7.1479 -2.0299 -4.1720 11 14 4.6501 -2.8269 -5.0694 12 1 4.2139 -1.8602 -6.1088 13 1 5.3073 -3.9893 -5.7191 14 1 3.4686 -3.2929 -4.2998 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8582 1.1583 2.4117 18 6 2.6488 -0.7289 3.5877 19 6 2.6990 0.2393 4.7415 20 7 1.7298 0.4774 5.5874 21 6 2.1204 1.3886 6.4775 22 6 1.2814 1.9228 7.6097 23 6 1.8342 3.1114 8.3989 24 6 1.8035 1.7187 9.0333 25 7 3.3494 1.7442 6.2095 26 7 3.7478 1.0085 5.0814 27 6 5.0481 1.0673 4.4090 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7516 -1.7715 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9995 -1.0728 -0.4259 35 1 3.4259 -1.7358 -3.1105 36 1 7.4712 -2.4868 -4.9642 37 1 2.2490 -1.6319 1.1526 38 1 3.6480 -1.1215 3.3986 39 1 1.9759 -1.5507 3.8326 40 1 0.2030 1.8774 7.4578 41 1 2.8049 3.5067 8.0994 42 1 1.1193 3.8476 8.7664 43 1 1.0686 1.5392 9.8179 44 1 2.7536 1.1976 9.1510 45 1 5.7207 0.3339 4.8539 46 1 4.9195 0.8468 3.3494 47 1 5.4716 2.0652 4.5237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754024776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:25 Heat of formation + Delta-G solvation = 58.373846 kcal Electronic energy + Delta-G solvation = -26512.873411 eV Core-core repulsion = 22732.614421 eV Total energy + Delta-G solvation = -3780.258990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.27045 -40.89091 -38.24708 -37.91658 -36.19072 -34.92043 -33.99561 -33.58653 -32.28453 -29.98824 -29.54579 -28.20453 -25.69368 -24.76825 -23.50492 -23.27651 -22.80770 -21.71117 -21.30884 -20.82435 -19.68296 -18.41441 -18.08736 -17.30611 -16.86959 -16.61055 -16.38293 -16.30577 -15.82984 -15.80663 -15.30119 -14.93394 -14.73188 -14.66853 -14.42877 -14.26092 -14.18063 -13.91754 -13.43148 -13.18169 -13.10399 -12.96946 -12.93060 -12.69795 -12.41421 -12.39764 -12.16720 -11.96915 -11.88910 -11.83022 -11.72936 -11.48635 -11.14966 -11.07336 -10.96339 -10.73444 -10.20177 -10.11866 -9.28774 -8.01785 -5.35845 0.44723 1.28252 1.40025 1.44459 1.51865 1.55107 1.61903 2.23194 2.50272 2.79127 2.97944 3.29960 3.34265 3.44825 3.47107 3.82064 3.86987 4.01578 4.04633 4.07306 4.14165 4.21174 4.27765 4.28493 4.37706 4.55505 4.56219 4.57506 4.63805 4.73581 4.78615 4.85554 4.88971 5.01280 5.10227 5.21887 5.22034 5.26039 5.27156 5.34014 5.36350 5.55096 5.75271 5.76362 6.21831 6.51863 7.02733 7.09394 7.20332 7.85112 8.04698 9.19520 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.002278 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.734607 B =12290.678648 C =13161.799785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.066 0.934 4 C -0.123 4.123 5 C 0.155 3.845 6 N -0.758 5.758 7 C -0.236 4.236 8 H 0.054 0.946 9 C -0.068 4.068 10 N -0.985 5.985 11 Si 0.959 3.041 12 H -0.281 1.281 13 H -0.298 1.298 14 H -0.243 1.243 15 N -0.705 5.705 16 C 0.521 3.479 17 O -0.580 6.580 18 C -0.063 4.063 19 C 0.295 3.705 20 N -0.558 5.558 21 C 0.240 3.760 22 C -0.095 4.095 23 C -0.154 4.154 24 C -0.142 4.142 25 N -0.342 5.342 26 N -0.377 5.377 27 C 0.086 3.914 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.009 0.991 34 H 0.034 0.966 35 H 0.368 0.632 36 H 0.257 0.743 37 H 0.418 0.582 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.136 0.864 41 H 0.087 0.913 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 2.014 22.627 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.084 0.916 4 C -0.162 4.162 5 C 0.029 3.971 6 N -0.404 5.404 7 C -0.367 4.367 8 H 0.072 0.928 9 C -0.259 4.259 10 N -0.635 5.635 11 Si 0.786 3.214 12 H -0.208 1.208 13 H -0.225 1.225 14 H -0.167 1.167 15 N -0.358 5.358 16 C 0.307 3.693 17 O -0.459 6.459 18 C -0.104 4.104 19 C 0.018 3.982 20 N -0.286 5.286 21 C -0.042 4.042 22 C -0.115 4.115 23 C -0.192 4.192 24 C -0.181 4.181 25 N -0.171 5.171 26 N -0.166 5.166 27 C -0.055 4.055 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.201 0.799 36 H 0.066 0.934 37 H 0.256 0.744 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.104 0.896 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.304 3.267 23.039 27.315 hybrid contribution 0.362 -0.695 -1.395 1.600 sum -13.942 2.573 21.644 25.874 Atomic orbital electron populations 1.22085 0.93803 1.03168 1.02153 1.20802 0.94687 0.96413 0.83345 0.91624 1.21975 0.94231 1.02437 0.97509 1.20781 0.93492 0.94354 0.88521 1.42710 1.03479 1.66457 1.27804 1.19017 0.84030 1.27839 1.05810 0.92832 1.25591 0.97582 1.02236 1.00513 1.69894 1.14307 1.49928 1.29394 0.85355 0.79221 0.77819 0.79043 1.20777 1.22472 1.16704 1.45941 1.66368 1.14896 1.08607 1.20452 0.77294 0.86722 0.84877 1.90758 1.51617 1.18062 1.85482 1.20391 1.08434 0.96015 0.85600 1.23855 0.83822 0.94130 0.96420 1.70184 1.29939 1.20809 1.07717 1.23650 0.90450 0.93514 0.96555 1.20257 0.97783 1.05459 0.88033 1.23093 1.03106 0.91553 1.01428 1.23098 1.03064 0.99010 0.92880 1.77840 1.15664 1.19574 1.04007 1.50328 1.14283 1.29983 1.22041 1.22289 0.79570 1.06022 0.97605 0.90647 0.90598 0.93833 0.89172 0.89612 0.97289 0.94755 0.79874 0.93379 0.74401 0.82796 0.82328 0.84609 0.89425 0.85556 0.85156 0.89599 0.87371 0.88105 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.48 71.98 0.68 -2.18 16 2 C 0.15 3.28 2.57 44.99 0.12 3.40 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.12 -2.85 4.87 30.59 0.15 -2.70 16 5 C 0.15 5.18 6.15 86.38 0.53 5.71 16 6 N -0.76 -32.90 5.41 -343.44 -1.86 -34.75 16 7 C -0.24 -13.00 10.47 84.04 0.88 -12.12 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 10 N -0.98 -61.94 13.97 21.65 0.30 -61.64 16 11 Si 0.96 43.48 27.73 68.60 1.90 45.38 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.24 -9.54 6.52 99.48 0.65 -8.89 16 15 N -0.71 -12.84 4.53 -442.52 -2.00 -14.84 16 16 C 0.52 11.52 7.79 87.66 0.68 12.21 16 17 O -0.58 -18.82 15.70 -3.01 -0.05 -18.87 16 18 C -0.06 -0.98 5.82 29.10 0.17 -0.81 16 19 C 0.29 7.25 6.48 138.23 0.90 8.15 16 20 N -0.56 -16.16 11.19 -179.72 -2.01 -18.17 16 21 C 0.24 6.69 7.69 138.63 1.07 7.75 16 22 C -0.09 -1.93 6.33 -11.54 -0.07 -2.00 16 23 C -0.15 -2.45 10.14 30.62 0.31 -2.14 16 24 C -0.14 -2.09 10.24 30.62 0.31 -1.78 16 25 N -0.34 -9.76 12.24 -51.33 -0.63 -10.38 16 26 N -0.38 -9.33 4.04 -359.86 -1.45 -10.78 16 27 C 0.09 1.42 11.16 127.77 1.43 2.84 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.03 1.11 7.75 -2.38 -0.02 1.09 16 35 H 0.37 14.90 5.53 -92.71 -0.51 14.39 16 36 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.42 5.23 8.60 -92.70 -0.80 4.43 16 38 H 0.15 1.31 7.76 -2.39 -0.02 1.29 16 39 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 42 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.10 1.49 7.72 -2.39 -0.02 1.47 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -84.38 395.25 1.43 -82.95 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.39 Total: 28.21 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 7.61 Total: 12.89 kcal Atomic # 7 Polarization: -142.92 SS G_CDS: -7.65 Total: -150.57 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.90 Total: 45.38 kcal Total: -84.38 1.43 -82.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754024776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.326 kcal (2) G-P(sol) polarization free energy of solvation -84.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds