Wall clock time and date at job start Fri Apr 10 2020 18:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30834 * 126.46791 * 2 1 4 4 N 1.28908 * 109.74485 * 180.02562 * 3 2 1 5 5 C 1.29836 * 109.47612 * 0.02562 * 4 3 2 6 6 N 1.34702 * 126.46133 * 179.97438 * 2 1 3 7 7 C 1.46253 * 128.85176 * 359.88263 * 6 2 1 8 8 C 1.53313 * 108.72890 * 197.08975 * 7 6 2 9 9 H 1.08998 * 109.45835 * 69.71102 * 8 7 6 10 10 C 1.50703 * 109.45561 * 189.66780 * 8 7 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 N 1.46503 * 109.47297 * 180.02562 * 17 16 13 19 19 C 1.36935 * 120.00080 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00128 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00038 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00060 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47139 * 89.99895 * 23 21 19 25 25 H 1.48501 * 109.47404 * 210.00110 * 23 21 19 26 26 H 1.48504 * 109.47269 * 330.00292 * 23 21 19 27 27 C 1.53145 * 109.57875 * 309.69930 * 8 7 6 28 28 C 1.50807 * 128.52666 * 179.84614 * 5 4 3 29 29 H 1.09006 * 109.46564 * 270.04178 * 1 2 3 30 30 H 1.08999 * 109.47061 * 30.03743 * 1 2 3 31 31 H 1.09002 * 109.47128 * 150.04013 * 1 2 3 32 32 H 1.09000 * 109.59689 * 77.30941 * 7 6 2 33 33 H 1.09004 * 109.59129 * 316.86248 * 7 6 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 35 35 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 36 36 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 37 37 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 38 38 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 39 39 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 40 40 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 41 41 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 42 42 H 0.96998 * 119.99912 * 359.97438 * 18 17 16 43 43 H 0.97003 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.50068 * 189.39182 * 27 8 7 45 45 H 1.08999 * 109.49445 * 309.49179 * 27 8 7 46 46 H 1.09002 * 109.72588 * 315.58183 * 28 5 4 47 47 H 1.09005 * 109.72887 * 76.25320 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6156 -0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9367 -2.4981 0.0035 8 6 3.1551 -3.3254 0.4295 9 1 3.3626 -3.1492 1.4849 10 6 2.8690 -4.7890 0.2118 11 8 1.7980 -5.1370 -0.2385 12 7 3.8029 -5.7111 0.5185 13 6 3.5270 -7.1333 0.3012 14 1 2.9087 -7.2517 -0.5887 15 6 2.7878 -7.7007 1.5147 16 6 4.8456 -7.8852 0.1099 17 6 5.5254 -7.4042 -1.1735 18 7 6.7879 -8.1245 -1.3571 19 6 7.5757 -7.8592 -2.4452 20 1 7.2662 -7.1191 -3.1684 21 6 8.7721 -8.5414 -2.6188 22 7 9.1490 -9.4436 -1.7377 23 14 9.8465 -8.1799 -4.1035 24 1 10.8018 -7.0929 -3.7704 25 1 10.5999 -9.4033 -4.4790 26 1 8.9918 -7.7561 -5.2416 27 6 4.3718 -2.9141 -0.4046 28 6 4.8051 -1.4972 -0.0055 29 1 -0.3633 0.0007 1.0278 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8904 -0.5132 32 1 1.6242 -2.7962 -0.9973 33 1 1.1203 -2.6605 0.7072 34 1 4.6593 -5.4327 0.8790 35 1 3.4060 -7.5823 2.4047 36 1 1.8484 -7.1650 1.6510 37 1 2.5829 -8.7590 1.3532 38 1 5.4995 -7.6944 0.9609 39 1 4.6470 -8.9546 0.0370 40 1 4.8717 -7.5950 -2.0246 41 1 5.7241 -6.3349 -1.1006 42 1 7.0660 -8.7889 -0.7074 43 1 9.9848 -9.9206 -1.8592 44 1 5.1905 -3.6101 -0.2217 45 1 4.1098 -2.9298 -1.4625 46 1 5.5299 -1.1173 -0.7255 47 1 5.2491 -1.5151 0.9899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754025201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:33 Heat of formation + Delta-G solvation = 34.354964 kcal Electronic energy + Delta-G solvation = -27177.081839 eV Core-core repulsion = 23395.781312 eV Total energy + Delta-G solvation = -3781.300526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.57042 -40.43091 -37.48604 -36.49350 -34.58677 -34.35655 -32.46350 -31.62179 -30.92598 -30.37283 -27.98609 -27.63810 -25.48265 -24.08938 -23.57522 -22.02676 -21.59430 -21.04423 -20.66087 -19.80632 -17.91942 -17.20839 -16.89186 -16.43616 -16.34130 -15.67265 -15.13360 -14.83267 -14.52810 -14.51353 -14.24378 -14.03970 -13.89236 -13.54964 -13.43905 -13.39192 -13.01301 -12.93876 -12.65325 -12.53301 -12.47256 -12.00210 -11.81664 -11.61429 -11.45559 -11.30724 -11.11466 -10.88303 -10.75700 -10.66195 -10.54559 -10.38830 -10.11890 -10.04316 -9.77938 -9.22906 -9.20571 -8.94174 -7.00876 -5.84001 -3.13317 1.54808 2.08258 2.30310 2.63271 2.93512 3.38745 3.44487 3.45891 3.70644 3.91542 4.06233 4.13727 4.20923 4.49286 4.52943 4.61874 4.69257 4.81907 4.86275 4.91298 5.04815 5.09810 5.13298 5.21012 5.26164 5.35507 5.39652 5.46765 5.55309 5.59123 5.60936 5.63583 5.70572 5.80485 5.88182 5.94482 6.10920 6.14393 6.22116 6.33565 6.58327 6.68382 6.73869 7.27556 7.62759 7.94071 8.34800 8.51957 9.46132 10.02878 10.37123 11.38742 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.002797 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.525870 B =10006.875756 C =11567.029220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.175 3.825 6 N -0.470 5.470 7 C 0.125 3.875 8 C -0.123 4.123 9 H 0.111 0.889 10 C 0.527 3.473 11 O -0.541 6.541 12 N -0.712 5.712 13 C 0.145 3.855 14 H 0.090 0.910 15 C -0.161 4.161 16 C -0.136 4.136 17 C 0.155 3.845 18 N -0.734 5.734 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.121 4.121 28 C -0.032 4.032 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.017 0.983 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 12.292 8.921 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.141 5.141 4 N -0.130 5.130 5 C -0.093 4.093 6 N -0.161 5.161 7 C 0.002 3.998 8 C -0.145 4.145 9 H 0.129 0.871 10 C 0.311 3.689 11 O -0.418 6.418 12 N -0.362 5.362 13 C 0.040 3.960 14 H 0.108 0.892 15 C -0.219 4.219 16 C -0.174 4.174 17 C 0.027 3.973 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.159 4.159 28 C -0.071 4.071 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.239 0.761 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.036 13.523 8.433 23.329 hybrid contribution 0.793 -1.332 -0.387 1.598 sum -16.244 12.191 8.046 21.845 Atomic orbital electron populations 1.20222 0.83704 1.04665 1.04039 1.24668 0.97098 0.82743 1.04476 1.74483 0.96160 1.23704 1.19800 1.74056 1.12233 1.08070 1.18639 1.24763 0.87070 0.92591 1.04842 1.46000 1.07021 1.08434 1.54657 1.21749 0.97548 0.75333 1.05205 1.21629 0.96457 0.93029 1.03403 0.87119 1.19959 0.84385 0.86893 0.77652 1.90727 1.24260 1.81952 1.44893 1.46095 1.18174 1.06938 1.65040 1.21038 0.97266 0.78747 0.98920 0.89183 1.22162 1.00399 1.01423 0.97957 1.22082 0.94686 1.00663 0.99993 1.20620 0.88319 0.94925 0.93406 1.42360 1.19884 1.47081 1.28482 1.19204 0.99878 1.17701 1.00497 0.91252 1.24748 0.98343 0.99023 0.98790 1.69653 1.23839 1.28254 1.36417 0.86196 0.80550 0.77173 0.82308 1.21632 1.21706 1.20734 1.21777 0.96835 0.96617 1.00712 1.20242 0.91182 0.90882 1.04812 0.89607 0.88638 0.90272 0.87883 0.87994 0.76139 0.92445 0.92446 0.91365 0.91270 0.90100 0.96489 0.96501 0.78303 0.93449 0.88356 0.89938 0.87412 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.29 36.01 0.37 -0.05 16 2 C 0.18 1.90 8.07 -155.45 -1.25 0.64 16 3 N -0.30 -4.24 12.23 32.70 0.40 -3.84 16 4 N -0.29 -4.17 12.21 32.76 0.40 -3.77 16 5 C 0.17 1.95 7.75 -155.30 -1.20 0.74 16 6 N -0.47 -4.63 3.11 -110.86 -0.35 -4.97 16 7 C 0.12 0.98 5.46 -4.01 -0.02 0.96 16 8 C -0.12 -0.90 2.54 -91.53 -0.23 -1.13 16 9 H 0.11 0.64 8.12 -51.93 -0.42 0.22 16 10 C 0.53 5.19 7.12 -10.98 -0.08 5.11 16 11 O -0.54 -7.08 15.49 5.55 0.09 -6.99 16 12 N -0.71 -6.78 4.35 -53.81 -0.23 -7.01 16 13 C 0.14 1.63 2.58 -67.93 -0.17 1.45 16 14 H 0.09 1.17 7.57 -51.93 -0.39 0.78 16 15 C -0.16 -1.57 9.49 37.16 0.35 -1.21 16 16 C -0.14 -1.83 4.87 -26.73 -0.13 -1.97 16 17 C 0.15 2.81 6.15 -4.04 -0.02 2.78 16 18 N -0.73 -17.61 5.60 -59.91 -0.34 -17.94 16 19 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 23 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.12 -0.88 5.22 -26.43 -0.14 -1.01 16 28 C -0.03 -0.24 6.33 -27.60 -0.17 -0.42 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 32 H 0.10 0.87 7.80 -51.93 -0.40 0.47 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.20 7.93 -40.82 -0.32 2.87 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.30 7.75 -51.93 -0.40 -0.10 16 42 H 0.38 9.67 7.67 -40.82 -0.31 9.35 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.10 0.64 7.32 -51.93 -0.38 0.26 16 45 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 46 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -35.26 384.29 -9.17 -44.43 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.67 Total: 5.46 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.96 Total: -1.27 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.61 Total: -64.31 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -6.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.26 -9.17 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754025201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.787 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds