Wall clock time and date at job start Fri Apr 10 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30834 * 126.46791 * 2 1 4 4 N 1.28908 * 109.74485 * 180.02562 * 3 2 1 5 5 C 1.29836 * 109.47612 * 0.02562 * 4 3 2 6 6 N 1.34702 * 126.46133 * 179.97438 * 2 1 3 7 7 C 1.46253 * 128.85176 * 359.88263 * 6 2 1 8 8 C 1.53313 * 108.72890 * 197.08975 * 7 6 2 9 9 H 1.08998 * 109.45835 * 69.71102 * 8 7 6 10 10 C 1.50703 * 109.45561 * 189.66780 * 8 7 6 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 N 1.46503 * 109.47297 * 180.02562 * 17 16 13 19 19 C 1.36935 * 120.00080 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00128 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00038 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00060 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47139 * 89.99895 * 23 21 19 25 25 H 1.48501 * 109.47404 * 210.00110 * 23 21 19 26 26 H 1.48504 * 109.47269 * 330.00292 * 23 21 19 27 27 C 1.53145 * 109.57875 * 309.69930 * 8 7 6 28 28 C 1.50807 * 128.52666 * 179.84614 * 5 4 3 29 29 H 1.09006 * 109.46564 * 270.04178 * 1 2 3 30 30 H 1.08999 * 109.47061 * 30.03743 * 1 2 3 31 31 H 1.09002 * 109.47128 * 150.04013 * 1 2 3 32 32 H 1.09000 * 109.59689 * 77.30941 * 7 6 2 33 33 H 1.09004 * 109.59129 * 316.86248 * 7 6 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 35 35 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 36 36 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 37 37 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 38 38 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 39 39 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 40 40 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 41 41 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 42 42 H 0.96998 * 119.99912 * 359.97438 * 18 17 16 43 43 H 0.97003 * 120.00102 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.50068 * 189.39182 * 27 8 7 45 45 H 1.08999 * 109.49445 * 309.49179 * 27 8 7 46 46 H 1.09002 * 109.72588 * 315.58183 * 28 5 4 47 47 H 1.09005 * 109.72887 * 76.25320 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6156 -0.0015 6 7 2.3075 -1.0833 0.0005 7 6 1.9367 -2.4981 0.0035 8 6 3.1551 -3.3254 0.4295 9 1 3.3626 -3.1492 1.4849 10 6 2.8690 -4.7890 0.2118 11 8 1.7980 -5.1370 -0.2385 12 7 3.8029 -5.7111 0.5185 13 6 3.5270 -7.1333 0.3012 14 1 2.9087 -7.2517 -0.5887 15 6 2.7878 -7.7007 1.5147 16 6 4.8456 -7.8852 0.1099 17 6 5.5254 -7.4042 -1.1735 18 7 6.7879 -8.1245 -1.3571 19 6 7.5757 -7.8592 -2.4452 20 1 7.2662 -7.1191 -3.1684 21 6 8.7721 -8.5414 -2.6188 22 7 9.1490 -9.4436 -1.7377 23 14 9.8465 -8.1799 -4.1035 24 1 10.8018 -7.0929 -3.7704 25 1 10.5999 -9.4033 -4.4790 26 1 8.9918 -7.7561 -5.2416 27 6 4.3718 -2.9141 -0.4046 28 6 4.8051 -1.4972 -0.0055 29 1 -0.3633 0.0007 1.0278 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8904 -0.5132 32 1 1.6242 -2.7962 -0.9973 33 1 1.1203 -2.6605 0.7072 34 1 4.6593 -5.4327 0.8790 35 1 3.4060 -7.5823 2.4047 36 1 1.8484 -7.1650 1.6510 37 1 2.5829 -8.7590 1.3532 38 1 5.4995 -7.6944 0.9609 39 1 4.6470 -8.9546 0.0370 40 1 4.8717 -7.5950 -2.0246 41 1 5.7241 -6.3349 -1.1006 42 1 7.0660 -8.7889 -0.7074 43 1 9.9848 -9.9206 -1.8592 44 1 5.1905 -3.6101 -0.2217 45 1 4.1098 -2.9298 -1.4625 46 1 5.5299 -1.1173 -0.7255 47 1 5.2491 -1.5151 0.9899 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754025201.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:32 Heat of formation + Delta-G solvation = 11.369791 kcal Electronic energy + Delta-G solvation = -27178.078551 eV Core-core repulsion = 23395.781312 eV Total energy + Delta-G solvation = -3782.297238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.38135 -41.24958 -38.35813 -37.51021 -36.10101 -35.18112 -33.66270 -32.85938 -31.81945 -31.24179 -29.38487 -28.34035 -26.27073 -25.73701 -24.34332 -23.29704 -22.53832 -22.05116 -21.53018 -20.52547 -19.21051 -18.59938 -17.66643 -17.28416 -17.22606 -16.66540 -16.41219 -15.85372 -15.51951 -15.40143 -15.27303 -15.14019 -14.91049 -14.83647 -14.57053 -14.23080 -13.93904 -13.59191 -13.50714 -13.22837 -13.17707 -13.08635 -12.87974 -12.86451 -12.62483 -12.37178 -12.28216 -12.23830 -12.07984 -11.96976 -11.89012 -11.62331 -11.38339 -11.15237 -10.94700 -10.86781 -10.08686 -10.04221 -8.98824 -7.95407 -5.23578 0.78017 1.35831 1.48688 1.49163 1.52792 1.57530 1.75962 2.16628 2.56010 3.05047 3.25025 3.38418 3.38974 3.53035 3.56839 3.67272 3.91137 4.00105 4.07628 4.12810 4.20572 4.23837 4.31998 4.42213 4.54723 4.59859 4.62116 4.65827 4.69395 4.78948 4.82314 4.84362 4.88794 4.95338 4.99381 5.02962 5.03317 5.21803 5.24851 5.30886 5.37196 5.50352 5.56450 5.87172 6.27618 6.51259 7.17787 7.34482 7.66296 8.10947 8.33117 9.27900 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.002797 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.525870 B =10006.875756 C =11567.029220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.180 3.820 3 N -0.347 5.347 4 N -0.337 5.337 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.125 3.875 8 C -0.112 4.112 9 H 0.135 0.865 10 C 0.530 3.470 11 O -0.573 6.573 12 N -0.707 5.707 13 C 0.154 3.846 14 H 0.071 0.929 15 C -0.154 4.154 16 C -0.121 4.121 17 C 0.153 3.847 18 N -0.746 5.746 19 C -0.244 4.244 20 H 0.073 0.927 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.969 3.031 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.272 1.272 27 C -0.115 4.115 28 C -0.028 4.028 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.005 0.995 41 H 0.030 0.970 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.110 0.890 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 12.400 9.661 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 N -0.188 5.188 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.003 3.997 8 C -0.133 4.133 9 H 0.153 0.847 10 C 0.316 3.684 11 O -0.453 6.453 12 N -0.358 5.358 13 C 0.049 3.951 14 H 0.089 0.911 15 C -0.212 4.212 16 C -0.159 4.159 17 C 0.027 3.973 18 N -0.389 5.389 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.153 4.153 28 C -0.067 4.067 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.251 0.749 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.023 0.977 41 H 0.048 0.952 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.128 0.872 45 H 0.087 0.913 46 H 0.128 0.872 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.703 13.669 9.176 24.175 hybrid contribution 0.906 -1.362 -0.632 1.753 sum -16.797 12.307 8.545 22.508 Atomic orbital electron populations 1.20435 0.80819 1.05741 1.05526 1.25413 0.98631 0.82270 1.02472 1.74381 0.96657 1.25610 1.22107 1.73946 1.12878 1.09950 1.20731 1.25316 0.88457 0.92229 1.03456 1.46120 1.06561 1.08996 1.54294 1.21853 0.98307 0.74188 1.05375 1.21561 0.96124 0.90876 1.04786 0.84722 1.20274 0.83722 0.87725 0.76685 1.90722 1.25670 1.82591 1.46333 1.46022 1.18716 1.06262 1.64827 1.20810 0.95634 0.79584 0.99117 0.91059 1.22085 1.00131 1.01511 0.97465 1.21914 0.95509 1.00637 0.97828 1.20790 0.86103 0.95092 0.95296 1.42578 1.21393 1.47395 1.27537 1.19581 1.00035 1.16883 1.01069 0.90917 1.25508 0.99973 0.99525 1.01558 1.69793 1.24172 1.29623 1.38239 0.85215 0.78847 0.76626 0.79528 1.21172 1.22329 1.19750 1.21734 0.97147 0.96568 0.99896 1.20387 0.89951 0.90236 1.06142 0.87780 0.88210 0.88511 0.88589 0.86353 0.74903 0.91130 0.92750 0.90944 0.90179 0.90505 0.97690 0.95160 0.79311 0.93986 0.87166 0.91271 0.87217 0.86139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.29 71.24 0.73 0.02 16 2 C 0.18 3.71 8.07 138.14 1.11 4.83 16 3 N -0.35 -9.90 12.23 -50.46 -0.62 -10.52 16 4 N -0.34 -9.75 12.21 -50.27 -0.61 -10.36 16 5 C 0.17 3.73 7.75 138.14 1.07 4.80 16 6 N -0.47 -8.62 3.11 -504.66 -1.57 -10.19 16 7 C 0.13 1.71 5.46 86.53 0.47 2.18 16 8 C -0.11 -1.34 2.54 -11.39 -0.03 -1.37 16 9 H 0.14 1.05 8.12 -2.39 -0.02 1.03 16 10 C 0.53 9.26 7.12 87.66 0.62 9.88 16 11 O -0.57 -14.11 15.49 -3.04 -0.05 -14.15 16 12 N -0.71 -11.70 4.35 -442.53 -1.93 -13.63 16 13 C 0.15 3.16 2.58 44.99 0.12 3.27 16 14 H 0.07 1.78 7.57 -2.39 -0.02 1.76 16 15 C -0.15 -2.62 9.49 71.98 0.68 -1.94 16 16 C -0.12 -3.04 4.87 30.59 0.15 -2.90 16 17 C 0.15 5.37 6.15 86.38 0.53 5.90 16 18 N -0.75 -35.35 5.60 -343.45 -1.92 -37.27 16 19 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 21 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 22 N -0.97 -57.26 13.06 21.65 0.28 -56.98 16 23 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C -0.12 -1.41 5.22 30.79 0.16 -1.25 16 28 C -0.03 -0.38 6.33 30.03 0.19 -0.19 16 29 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 0.70 8.04 -2.39 -0.02 0.68 16 32 H 0.10 1.49 7.80 -2.39 -0.02 1.47 16 33 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.41 5.24 7.93 -92.71 -0.74 4.50 16 35 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.01 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.03 1.00 7.75 -2.39 -0.02 0.98 16 42 H 0.37 18.83 7.67 -92.71 -0.71 18.12 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.11 1.12 7.32 -2.39 -0.02 1.10 16 45 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 46 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -76.92 384.29 2.27 -74.65 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.46 Total: 24.19 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 7.12 Total: 7.42 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -6.37 Total: -138.95 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.05 Total: -14.15 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.92 2.27 -74.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754025201.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.019 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds