Wall clock time and date at job start Fri Apr 10 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.88668 * 2 1 4 4 C 1.34768 * 120.00137 * 297.57715 * 3 2 1 5 5 O 1.21279 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47315 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47340 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46875 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46795 * 180.02562 * 9 8 7 11 11 C 1.35347 * 126.91544 * 84.99655 * 10 9 8 12 12 N 1.33771 * 106.49661 * 179.97438 * 11 10 9 13 13 N 1.28635 * 108.88760 * 0.02562 * 12 11 10 14 14 N 1.28711 * 110.17605 * 359.75742 * 13 12 11 15 15 H 0.97000 * 125.86740 * 180.24744 * 14 13 12 16 16 C 1.55157 * 111.04029 * 123.91047 * 2 1 3 17 17 C 1.54334 * 103.02095 * 153.39138 * 16 2 1 18 18 N 1.47014 * 107.26782 * 338.14225 * 17 16 2 19 19 C 1.36945 * 125.64902 * 178.84833 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.68982 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.68887 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47428 * 108.70537 * 358.58102 * 18 17 16 28 28 H 1.09001 * 109.46863 * 182.42381 * 1 2 3 29 29 H 1.09006 * 109.46671 * 302.41970 * 1 2 3 30 30 H 1.08993 * 109.47559 * 62.42536 * 1 2 3 31 31 H 0.97003 * 119.99120 * 117.57764 * 3 2 1 32 32 H 1.08992 * 109.47480 * 300.00483 * 6 4 3 33 33 H 1.09003 * 109.47147 * 60.00371 * 6 4 3 34 34 H 1.09001 * 109.47382 * 300.00479 * 7 6 4 35 35 H 1.08996 * 109.47388 * 60.00257 * 7 6 4 36 36 H 1.08993 * 109.47204 * 299.99776 * 8 7 6 37 37 H 1.09000 * 109.46840 * 60.00209 * 8 7 6 38 38 H 1.09003 * 109.47008 * 299.99642 * 9 8 7 39 39 H 1.08996 * 109.47804 * 60.00028 * 9 8 7 40 40 H 1.08001 * 126.75343 * 359.97438 * 11 10 9 41 41 H 1.08998 * 110.71770 * 271.95306 * 16 2 1 42 42 H 1.08998 * 110.71728 * 35.22660 * 16 2 1 43 43 H 1.08998 * 109.99457 * 218.65928 * 17 16 2 44 44 H 1.09007 * 109.77698 * 97.49747 * 17 16 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36579 * 143.19056 * 27 18 17 47 47 H 1.08993 * 110.36917 * 265.41008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 -1.0345 5 8 1.1177 1.7977 -1.9658 6 6 2.3245 3.5991 -1.0342 7 6 1.8821 4.3139 -2.3125 8 6 2.4277 5.7434 -2.3125 9 6 1.9846 6.4583 -3.5906 10 6 2.5225 7.8661 -3.5908 11 6 3.7456 8.2689 -4.0073 12 7 3.7905 9.5938 -3.8285 13 7 2.6696 9.9854 -3.3335 14 7 1.8780 8.9824 -3.1791 15 1 0.9751 9.0200 -2.8264 16 6 2.0870 -0.8079 1.2018 17 6 3.4666 -1.2786 0.6948 18 7 3.4274 -1.2420 -0.7743 19 6 4.4642 -1.5649 -1.6087 20 1 4.3329 -1.5102 -2.6792 21 6 5.6838 -1.9626 -1.0784 22 7 5.8437 -2.0297 0.2264 23 14 7.0978 -2.4038 -2.2166 24 1 8.2813 -2.7923 -1.4081 25 1 6.6975 -3.5389 -3.0863 26 1 7.4389 -1.2302 -3.0601 27 6 2.0852 -0.8062 -1.2008 28 1 -0.3633 -1.0268 0.0435 29 1 -0.3633 0.5510 0.8676 30 1 -0.3634 0.4757 -0.9108 31 1 2.5885 1.6831 0.7447 32 1 1.9390 4.1348 -0.1668 33 1 3.4134 3.5728 -0.9905 34 1 2.2673 3.7784 -3.1802 35 1 0.7933 4.3402 -2.3558 36 1 2.0427 6.2792 -1.4449 37 1 3.5165 5.7167 -2.2694 38 1 2.3692 5.9226 -4.4585 39 1 0.8958 6.4850 -3.6333 40 1 4.5310 7.6436 -4.4057 41 1 2.1930 -0.1700 2.0793 42 1 1.4482 -1.6635 1.4205 43 1 3.6617 -2.2955 1.0353 44 1 4.2431 -0.6073 1.0618 45 1 6.6959 -2.3080 0.5969 46 1 2.1553 -0.1712 -2.0840 47 1 1.4528 -1.6701 -1.4047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754678998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:47 Heat of formation + Delta-G solvation = 63.887360 kcal Electronic energy + Delta-G solvation = -26842.602839 eV Core-core repulsion = 23062.582934 eV Total energy + Delta-G solvation = -3780.019906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.60971 -39.86852 -37.51212 -36.05948 -33.92777 -33.66897 -32.66620 -31.80679 -30.15711 -29.12010 -28.62056 -25.71013 -25.31970 -23.65020 -23.28408 -22.31376 -21.49082 -20.56219 -20.00613 -18.99323 -18.52075 -17.14528 -16.52667 -16.26290 -16.07248 -15.56179 -14.91200 -14.84359 -14.62314 -14.40920 -14.03761 -13.79858 -13.38849 -13.09373 -12.85308 -12.79115 -12.30151 -12.11407 -11.94906 -11.89796 -11.71805 -11.60861 -11.52963 -11.41153 -11.11645 -10.90734 -10.89730 -10.87054 -10.77354 -10.39031 -10.36022 -10.10944 -9.98845 -9.65486 -9.48395 -9.20087 -8.63398 -8.51542 -6.79972 -5.70831 -3.02749 1.21844 2.24481 2.39849 3.00653 3.40761 3.45234 3.46306 3.51594 4.07137 4.30883 4.50886 4.57279 4.60993 4.83792 4.85518 5.03675 5.09091 5.19150 5.23344 5.26607 5.37765 5.46175 5.52238 5.56409 5.61212 5.65750 5.69978 5.72157 5.83047 6.00086 6.05741 6.13431 6.14293 6.20066 6.33969 6.39388 6.48016 6.53736 6.67682 6.83155 7.15845 7.54261 7.56137 7.79616 7.93987 8.12463 8.26450 8.62868 9.23720 9.83905 10.50103 11.41156 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.002590 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.546914 B =10806.961700 C =12392.511308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 N -0.703 5.703 4 C 0.515 3.485 5 O -0.544 6.544 6 C -0.142 4.142 7 C -0.101 4.101 8 C -0.116 4.116 9 C -0.050 4.050 10 C -0.003 4.003 11 C -0.048 4.048 12 N -0.266 5.266 13 N -0.088 5.088 14 N -0.392 5.392 15 H 0.447 0.553 16 C -0.147 4.147 17 C 0.178 3.822 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.925 5.925 23 Si 0.911 3.089 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.286 1.286 27 C 0.131 3.869 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.397 0.603 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.192 0.808 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.045 0.955 45 H 0.251 0.749 46 H 0.056 0.944 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.318 16.092 -0.601 19.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.069 3.931 3 N -0.353 5.353 4 C 0.302 3.698 5 O -0.422 6.422 6 C -0.182 4.182 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.089 4.089 10 C -0.137 4.137 11 C -0.205 4.205 12 N -0.133 5.133 13 N -0.068 5.068 14 N -0.113 5.113 15 H 0.292 0.708 16 C -0.186 4.186 17 C 0.053 3.947 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.574 5.574 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.212 1.212 26 H -0.212 1.212 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.209 0.791 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -11.239 17.273 -1.142 20.639 hybrid contribution 0.470 -1.322 0.067 1.405 sum -10.770 15.951 -1.076 19.276 Atomic orbital electron populations 1.21978 0.94547 1.01907 1.02211 1.21456 0.92381 0.81104 0.98126 1.45843 1.54144 1.12724 1.22629 1.20471 0.80120 0.87224 0.82030 1.90638 1.39672 1.76981 1.34878 1.21661 1.02955 0.93442 1.00131 1.21298 1.01486 0.93548 0.97611 1.21639 1.01975 0.95642 0.96153 1.20238 1.01184 0.86793 1.00729 1.22434 0.94926 0.91648 1.04668 1.23481 0.97745 0.92550 1.06759 1.75105 1.13147 1.11608 1.13478 1.78292 0.97470 1.12870 1.18147 1.45143 1.16427 1.05486 1.44195 0.70809 1.23230 1.00547 0.98871 0.95945 1.21141 0.90004 0.99790 0.83746 1.44438 1.07804 1.78911 1.01781 1.19009 0.89339 1.37697 0.88948 0.90678 1.24763 0.97753 1.02044 0.96011 1.69939 1.24189 1.54025 1.09200 0.86212 0.81856 0.78309 0.79489 1.21649 1.21222 1.21232 1.21882 0.87484 0.94851 0.95338 0.91977 0.93270 0.91109 0.76923 0.89527 0.88818 0.90590 0.91177 0.91997 0.90898 0.88282 0.90188 0.79142 0.91839 0.91029 0.93955 0.93662 0.93826 0.92589 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.59 37.16 0.32 -1.86 16 2 C 0.16 2.67 0.83 -129.67 -0.11 2.56 16 3 N -0.70 -10.73 5.18 -45.62 -0.24 -10.96 16 4 C 0.52 7.68 7.22 -10.99 -0.08 7.60 16 5 O -0.54 -9.76 12.78 5.56 0.07 -9.69 16 6 C -0.14 -1.46 5.70 -27.89 -0.16 -1.62 16 7 C -0.10 -0.91 4.50 -26.73 -0.12 -1.03 16 8 C -0.12 -0.75 5.20 -26.73 -0.14 -0.89 16 9 C -0.05 -0.27 5.78 -27.88 -0.16 -0.43 16 10 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 11 C -0.05 -0.44 11.99 -17.74 -0.21 -0.65 16 12 N -0.27 -3.18 12.41 30.23 0.38 -2.80 16 13 N -0.09 -0.95 13.38 60.35 0.81 -0.14 16 14 N -0.39 -2.79 6.98 33.54 0.23 -2.56 16 15 H 0.45 1.51 8.96 -190.40 -1.71 -0.20 16 16 C -0.15 -2.55 5.99 -24.89 -0.15 -2.70 16 17 C 0.18 4.14 5.37 -3.06 -0.02 4.13 16 18 N -0.60 -15.28 3.39 -170.06 -0.58 -15.85 16 19 C -0.22 -6.20 10.28 -15.06 -0.15 -6.36 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.93 -26.77 10.31 55.49 0.57 -26.20 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.13 2.84 6.10 -2.52 -0.02 2.82 16 28 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 31 H 0.40 5.29 8.49 -40.82 -0.35 4.95 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.06 0.94 8.05 -51.93 -0.42 0.53 16 42 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 43 H 0.04 1.11 7.52 -51.93 -0.39 0.72 16 44 H 0.05 1.15 7.37 -51.93 -0.38 0.77 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.06 1.30 6.32 -51.93 -0.33 0.98 16 47 H 0.02 0.50 8.04 -51.93 -0.42 0.08 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -35.01 379.68 -8.62 -43.63 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -8.94 Total: 1.09 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.63 Total: 0.64 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 1.18 Total: -58.51 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.01 -8.62 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754678998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.518 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds