Wall clock time and date at job start Fri Apr 10 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 110.88668 * 2 1 4 4 C 1.34768 * 120.00137 * 297.57715 * 3 2 1 5 5 O 1.21279 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99897 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47315 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.47340 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46875 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46795 * 180.02562 * 9 8 7 11 11 C 1.35347 * 126.91544 * 84.99655 * 10 9 8 12 12 N 1.33771 * 106.49661 * 179.97438 * 11 10 9 13 13 N 1.28635 * 108.88760 * 0.02562 * 12 11 10 14 14 N 1.28711 * 110.17605 * 359.75742 * 13 12 11 15 15 H 0.97000 * 125.86740 * 180.24744 * 14 13 12 16 16 C 1.55157 * 111.04029 * 123.91047 * 2 1 3 17 17 C 1.54334 * 103.02095 * 153.39138 * 16 2 1 18 18 N 1.47014 * 107.26782 * 338.14225 * 17 16 2 19 19 C 1.36945 * 125.64902 * 178.84833 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.68982 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.68887 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47428 * 108.70537 * 358.58102 * 18 17 16 28 28 H 1.09001 * 109.46863 * 182.42381 * 1 2 3 29 29 H 1.09006 * 109.46671 * 302.41970 * 1 2 3 30 30 H 1.08993 * 109.47559 * 62.42536 * 1 2 3 31 31 H 0.97003 * 119.99120 * 117.57764 * 3 2 1 32 32 H 1.08992 * 109.47480 * 300.00483 * 6 4 3 33 33 H 1.09003 * 109.47147 * 60.00371 * 6 4 3 34 34 H 1.09001 * 109.47382 * 300.00479 * 7 6 4 35 35 H 1.08996 * 109.47388 * 60.00257 * 7 6 4 36 36 H 1.08993 * 109.47204 * 299.99776 * 8 7 6 37 37 H 1.09000 * 109.46840 * 60.00209 * 8 7 6 38 38 H 1.09003 * 109.47008 * 299.99642 * 9 8 7 39 39 H 1.08996 * 109.47804 * 60.00028 * 9 8 7 40 40 H 1.08001 * 126.75343 * 359.97438 * 11 10 9 41 41 H 1.08998 * 110.71770 * 271.95306 * 16 2 1 42 42 H 1.08998 * 110.71728 * 35.22660 * 16 2 1 43 43 H 1.08998 * 109.99457 * 218.65928 * 17 16 2 44 44 H 1.09007 * 109.77698 * 97.49747 * 17 16 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 46 46 H 1.09003 * 110.36579 * 143.19056 * 27 18 17 47 47 H 1.08993 * 110.36917 * 265.41008 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7877 2.1910 -1.0345 5 8 1.1177 1.7977 -1.9658 6 6 2.3245 3.5991 -1.0342 7 6 1.8821 4.3139 -2.3125 8 6 2.4277 5.7434 -2.3125 9 6 1.9846 6.4583 -3.5906 10 6 2.5225 7.8661 -3.5908 11 6 3.7456 8.2689 -4.0073 12 7 3.7905 9.5938 -3.8285 13 7 2.6696 9.9854 -3.3335 14 7 1.8780 8.9824 -3.1791 15 1 0.9751 9.0200 -2.8264 16 6 2.0870 -0.8079 1.2018 17 6 3.4666 -1.2786 0.6948 18 7 3.4274 -1.2420 -0.7743 19 6 4.4642 -1.5649 -1.6087 20 1 4.3329 -1.5102 -2.6792 21 6 5.6838 -1.9626 -1.0784 22 7 5.8437 -2.0297 0.2264 23 14 7.0978 -2.4038 -2.2166 24 1 8.2813 -2.7923 -1.4081 25 1 6.6975 -3.5389 -3.0863 26 1 7.4389 -1.2302 -3.0601 27 6 2.0852 -0.8062 -1.2008 28 1 -0.3633 -1.0268 0.0435 29 1 -0.3633 0.5510 0.8676 30 1 -0.3634 0.4757 -0.9108 31 1 2.5885 1.6831 0.7447 32 1 1.9390 4.1348 -0.1668 33 1 3.4134 3.5728 -0.9905 34 1 2.2673 3.7784 -3.1802 35 1 0.7933 4.3402 -2.3558 36 1 2.0427 6.2792 -1.4449 37 1 3.5165 5.7167 -2.2694 38 1 2.3692 5.9226 -4.4585 39 1 0.8958 6.4850 -3.6333 40 1 4.5310 7.6436 -4.4057 41 1 2.1930 -0.1700 2.0793 42 1 1.4482 -1.6635 1.4205 43 1 3.6617 -2.2955 1.0353 44 1 4.2431 -0.6073 1.0618 45 1 6.6959 -2.3080 0.5969 46 1 2.1553 -0.1712 -2.0840 47 1 1.4528 -1.6701 -1.4047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754678998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:46 Heat of formation + Delta-G solvation = 38.876593 kcal Electronic energy + Delta-G solvation = -26843.687388 eV Core-core repulsion = 23062.582934 eV Total energy + Delta-G solvation = -3781.104454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.26760 -41.15659 -38.94926 -36.78014 -35.60687 -34.36679 -33.72511 -33.17279 -31.68939 -30.41069 -29.75800 -27.50109 -26.15938 -25.29611 -23.98359 -23.11328 -22.28976 -21.99553 -21.29757 -20.35183 -19.16078 -18.92810 -17.75402 -17.06783 -17.01708 -16.84460 -16.62868 -15.83106 -15.56734 -15.54361 -15.29966 -15.04688 -14.79619 -14.23479 -13.90857 -13.80150 -13.55932 -13.48038 -13.32015 -13.10487 -12.99048 -12.78844 -12.74091 -12.49917 -12.24909 -12.09338 -12.07005 -12.03211 -11.95081 -11.78345 -11.67627 -11.58292 -11.49992 -11.39806 -10.70060 -10.49264 -10.09682 -9.87057 -8.85769 -7.85293 -5.19028 0.59508 1.44508 1.46865 1.53417 1.54245 1.85410 1.90764 2.40052 2.48900 3.32840 3.50603 3.59969 3.72592 3.75990 3.95176 4.00508 4.07241 4.08030 4.20541 4.22369 4.40185 4.55635 4.60628 4.65649 4.67486 4.72947 4.81967 4.87248 4.89210 4.94990 4.97366 5.02672 5.06004 5.10695 5.14889 5.23221 5.38066 5.41052 5.43224 5.52818 5.66384 5.74382 5.83387 6.02318 6.20634 6.77811 7.12216 7.43954 7.47705 7.78539 8.42759 9.24314 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.002590 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.546914 B =10806.961700 C =12392.511308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 N -0.705 5.705 4 C 0.507 3.493 5 O -0.578 6.578 6 C -0.135 4.135 7 C -0.095 4.095 8 C -0.106 4.106 9 C -0.044 4.044 10 C 0.013 3.987 11 C -0.064 4.064 12 N -0.306 5.306 13 N -0.117 5.117 14 N -0.375 5.375 15 H 0.462 0.538 16 C -0.130 4.130 17 C 0.185 3.815 18 N -0.621 5.621 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.974 3.026 24 H -0.291 1.291 25 H -0.281 1.281 26 H -0.278 1.278 27 C 0.127 3.873 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.408 0.592 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.207 0.793 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.005 0.995 44 H 0.018 0.982 45 H 0.247 0.753 46 H 0.034 0.966 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 16.996 0.119 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.080 3.920 3 N -0.356 5.356 4 C 0.295 3.705 5 O -0.458 6.458 6 C -0.175 4.175 7 C -0.134 4.134 8 C -0.145 4.145 9 C -0.084 4.084 10 C -0.122 4.122 11 C -0.222 4.222 12 N -0.172 5.172 13 N -0.096 5.096 14 N -0.099 5.099 15 H 0.311 0.689 16 C -0.168 4.168 17 C 0.061 3.939 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.208 1.208 26 H -0.204 1.204 27 C 0.001 3.999 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.243 0.757 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.224 0.776 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.023 0.977 44 H 0.037 0.963 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.530 18.217 -0.406 22.113 hybrid contribution 0.825 -1.684 -0.200 1.886 sum -11.705 16.532 -0.606 20.266 Atomic orbital electron populations 1.21891 0.92096 1.02834 1.02784 1.21285 0.93955 0.81591 0.95216 1.45886 1.54352 1.11943 1.23389 1.21316 0.79360 0.88726 0.81096 1.90625 1.41237 1.77964 1.35977 1.21715 1.02881 0.90702 1.02169 1.21228 1.01464 0.94606 0.96065 1.21529 1.01670 0.94084 0.97169 1.20268 1.02367 0.85313 1.00433 1.22612 0.94178 0.92168 1.03222 1.23915 0.99133 0.91989 1.07169 1.75060 1.14094 1.13235 1.14835 1.78219 0.97915 1.14056 1.19445 1.45164 1.16826 1.04850 1.43026 0.68883 1.23099 0.96790 0.99991 0.96931 1.20932 0.93026 0.97211 0.82772 1.44694 1.08564 1.78847 1.02602 1.19279 0.90616 1.37848 0.89292 0.91351 1.25526 0.99979 1.02309 0.97494 1.70143 1.24307 1.54574 1.10520 0.85231 0.78690 0.78151 0.77742 1.21640 1.20754 1.20424 1.21999 0.86107 0.94979 0.96798 0.91141 0.90493 0.92448 0.75687 0.86275 0.88626 0.92798 0.91132 0.90642 0.91273 0.87846 0.88217 0.77598 0.88433 0.89481 0.97697 0.96344 0.94337 0.94763 0.96372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.59 71.98 0.62 -3.07 16 2 C 0.17 5.45 0.83 5.00 0.00 5.45 16 3 N -0.70 -20.23 5.18 -416.65 -2.16 -22.39 16 4 C 0.51 14.38 7.22 87.66 0.63 15.01 16 5 O -0.58 -20.44 12.78 -3.03 -0.04 -20.48 16 6 C -0.14 -2.46 5.70 29.85 0.17 -2.29 16 7 C -0.10 -1.52 4.50 30.59 0.14 -1.38 16 8 C -0.11 -1.08 5.20 30.60 0.16 -0.92 16 9 C -0.04 -0.36 5.78 29.85 0.17 -0.19 16 10 C 0.01 0.17 6.56 41.35 0.27 0.44 16 11 C -0.06 -1.10 11.99 83.73 1.00 -0.10 16 12 N -0.31 -7.23 12.41 -58.26 -0.72 -7.95 16 13 N -0.12 -2.45 13.38 37.02 0.50 -1.96 16 14 N -0.38 -4.70 6.98 -47.79 -0.33 -5.03 16 15 H 0.46 2.08 8.96 -219.96 -1.97 0.11 16 16 C -0.13 -4.24 5.99 31.79 0.19 -4.05 16 17 C 0.19 8.73 5.37 86.73 0.47 9.20 16 18 N -0.62 -32.09 3.39 -691.96 -2.35 -34.44 16 19 C -0.24 -13.83 10.28 84.03 0.86 -12.97 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 22 N -0.95 -55.92 10.31 21.65 0.22 -55.69 16 23 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 C 0.13 5.55 6.10 86.86 0.53 6.08 16 28 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 29 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.06 1.73 6.53 -2.39 -0.02 1.71 16 31 H 0.41 9.91 8.49 -92.71 -0.79 9.12 16 32 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.10 2.56 8.05 -2.39 -0.02 2.54 16 42 H 0.09 2.61 8.02 -2.39 -0.02 2.60 16 43 H 0.00 0.26 7.52 -2.39 -0.02 0.24 16 44 H 0.02 0.95 7.37 -2.38 -0.02 0.93 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.03 1.63 6.32 -2.39 -0.02 1.62 16 47 H 0.02 0.81 8.04 -2.39 -0.02 0.79 16 Total: -1.00 -79.05 379.68 1.06 -77.99 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -1.77 Total: 13.62 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.69 Total: 8.27 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -4.84 Total: -127.46 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.04 Total: -20.48 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -79.05 1.06 -77.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754678998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.863 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds