Wall clock time and date at job start Fri Apr 10 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 O 1.21283 * 119.99839 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.46668 * 125.33232 * 180.02562 * 6 4 3 8 8 C 1.53724 * 107.93995 * 180.54925 * 7 6 4 9 9 H 1.09003 * 112.56502 * 139.72643 * 8 7 6 10 10 C 1.53696 * 109.33980 * 266.24939 * 8 7 6 11 11 N 1.47166 * 107.73492 * 128.69205 * 10 8 7 12 12 C 1.36935 * 125.25546 * 180.39735 * 11 10 8 13 13 H 1.08005 * 120.00510 * 179.13832 * 12 11 10 14 14 C 1.38819 * 120.00217 * 359.14496 * 12 11 10 15 15 N 1.31626 * 119.99370 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00361 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46736 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47336 * 119.99654 * 16 14 12 19 19 H 1.48499 * 109.46663 * 239.99830 * 16 14 12 20 20 C 1.46741 * 109.41021 * 359.65905 * 11 10 8 21 21 C 1.53925 * 106.72131 * 342.40170 * 20 11 10 22 22 H 1.09001 * 113.01171 * 150.83699 * 21 20 11 23 23 C 1.46771 * 125.33926 * 359.69590 * 6 4 3 24 24 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 25 25 O 1.21283 * 120.00463 * 179.97438 * 24 2 1 26 26 C 1.50700 * 119.99675 * 359.72090 * 24 2 1 27 27 C 1.53002 * 117.49942 * 249.02519 * 26 24 2 28 28 C 1.53005 * 117.50073 * 180.36469 * 26 24 2 29 29 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 30 30 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 33 33 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 34 34 H 1.09008 * 109.77190 * 300.16476 * 7 6 4 35 35 H 1.08998 * 109.77324 * 60.92329 * 7 6 4 36 36 H 1.09003 * 109.76304 * 247.20103 * 10 8 7 37 37 H 1.09009 * 109.75858 * 7.91480 * 10 8 7 38 38 H 0.97000 * 119.98995 * 179.97438 * 15 14 12 39 39 H 1.09008 * 110.00823 * 223.08685 * 20 11 10 40 40 H 1.08999 * 110.00972 * 101.71971 * 20 11 10 41 41 H 1.08996 * 110.02898 * 280.76983 * 23 6 4 42 42 H 1.08994 * 110.03008 * 42.19351 * 23 6 4 43 43 H 1.09001 * 115.55204 * 34.69144 * 26 24 2 44 44 H 1.09008 * 117.49817 * 359.97438 * 27 26 24 45 45 H 1.09000 * 117.50215 * 145.01570 * 27 26 24 46 46 H 1.08994 * 117.50196 * 214.97848 * 28 26 24 47 47 H 1.09009 * 117.49229 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0549 1.0211 -2.3427 6 7 3.1107 2.8516 -1.6671 7 6 3.4178 3.3849 -2.9984 8 6 4.1927 4.6998 -2.8146 9 1 5.0080 4.8083 -3.5299 10 6 3.2075 5.8792 -2.8416 11 7 3.4616 6.7029 -1.6489 12 6 2.7787 7.8418 -1.3147 13 1 3.0275 8.3746 -0.4088 14 6 1.7665 8.3117 -2.1403 15 7 1.4635 7.6626 -3.2446 16 14 0.8344 9.8649 -1.6842 17 1 1.3625 10.4011 -0.4040 18 1 1.0078 10.8789 -2.7552 19 1 -0.6085 9.5491 -1.5304 20 6 4.5481 6.1042 -0.8651 21 6 4.6879 4.6475 -1.3425 22 1 5.7026 4.2621 -1.2432 23 6 3.6314 3.7673 -0.6450 24 6 2.1389 -1.1672 -0.0005 25 8 3.3517 -1.1672 -0.0010 26 6 1.3854 -2.4723 0.0053 27 6 1.4583 -3.3245 1.2739 28 6 2.2075 -3.7627 0.0130 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1384 0.5137 34 1 4.0294 2.6705 -3.5497 35 1 2.4924 3.5750 -3.5420 36 1 3.3801 6.4832 -3.7324 37 1 2.1839 5.5043 -2.8431 38 1 0.7559 7.9908 -3.8213 39 1 4.2990 6.1267 0.1958 40 1 5.4776 6.6454 -1.0419 41 1 2.8249 4.3869 -0.2531 42 1 4.0939 3.2007 0.1631 43 1 0.4477 -2.4763 -0.5505 44 1 2.0516 -2.9413 2.1042 45 1 0.5687 -3.8893 1.5526 46 1 1.8106 -4.6156 -0.5373 47 1 3.2935 -3.6675 0.0135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754842634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:54 Heat of formation + Delta-G solvation = 1.086971 kcal Electronic energy + Delta-G solvation = -27865.345959 eV Core-core repulsion = 24050.310073 eV Total energy + Delta-G solvation = -3815.035886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58770 -39.81652 -38.16437 -36.40768 -35.48153 -34.88010 -32.32410 -30.75939 -29.46231 -28.92321 -26.77948 -25.55323 -25.49411 -23.95204 -22.74655 -22.59416 -20.13689 -19.67877 -19.28423 -18.84031 -17.73112 -17.28609 -16.75901 -16.33896 -15.96192 -15.58003 -14.99445 -14.80420 -14.52981 -14.29264 -13.89631 -13.69442 -13.21551 -13.13717 -13.04772 -12.86363 -12.68440 -12.39655 -12.06640 -11.97266 -11.87461 -11.82503 -11.50213 -11.47823 -10.90920 -10.87353 -10.86283 -10.76126 -10.43176 -10.12714 -10.09182 -9.99776 -9.89791 -9.86804 -9.65529 -8.79313 -8.63981 -8.31351 -6.87620 -5.76237 -3.10089 2.28647 2.67523 2.81080 3.33389 3.36331 3.42015 3.44552 3.61635 4.24710 4.45547 4.48576 4.58548 4.61089 4.75594 4.83636 4.97638 5.03915 5.10262 5.18852 5.27469 5.29168 5.34426 5.46295 5.47118 5.56189 5.58192 5.64305 5.68052 5.69346 5.85351 5.86288 5.96730 6.13994 6.16848 6.27855 6.36295 6.53694 6.56497 6.62708 6.79702 7.15207 7.52685 7.54786 7.76424 7.78292 8.01565 8.21489 8.35948 9.17164 9.78182 10.41939 11.35243 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.002846 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.339284 B = 9835.197268 C =10315.909345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.595 5.595 3 C 0.101 3.899 4 C 0.511 3.489 5 O -0.541 6.541 6 N -0.606 5.606 7 C 0.122 3.878 8 C -0.123 4.123 9 H 0.091 0.909 10 C 0.185 3.815 11 N -0.604 5.604 12 C -0.229 4.229 13 H 0.079 0.921 14 C -0.008 4.008 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.291 1.291 20 C 0.147 3.853 21 C -0.110 4.110 22 H 0.089 0.911 23 C 0.109 3.891 24 C 0.550 3.450 25 O -0.539 6.539 26 C -0.192 4.192 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.022 0.978 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.126 0.874 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 -17.954 8.704 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.327 5.327 3 C -0.025 4.025 4 C 0.298 3.702 5 O -0.418 6.418 6 N -0.340 5.340 7 C -0.001 4.001 8 C -0.143 4.143 9 H 0.109 0.891 10 C 0.061 3.939 11 N -0.330 5.330 12 C -0.358 4.358 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.568 5.568 16 Si 0.742 3.258 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.218 1.218 20 C 0.020 3.980 21 C -0.130 4.130 22 H 0.108 0.892 23 C -0.013 4.013 24 C 0.339 3.661 25 O -0.416 6.416 26 C -0.213 4.213 27 C -0.189 4.189 28 C -0.186 4.186 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.023 -18.246 8.145 19.981 hybrid contribution -0.710 1.079 0.005 1.292 sum -0.687 -17.166 8.150 19.015 Atomic orbital electron populations 1.21849 0.78584 1.03910 1.01717 1.47298 1.07308 1.04777 1.73358 1.21301 1.00052 0.86474 0.94713 1.20673 0.77865 0.79798 0.91875 1.90675 1.51451 1.53484 1.46226 1.48266 1.55607 1.21420 1.08689 1.21811 0.99869 0.94356 0.84048 1.23159 0.99066 0.95918 0.96158 0.89106 1.21208 0.94499 0.87660 0.90552 1.44365 1.38198 1.27020 1.23464 1.19083 1.11805 0.99323 1.05544 0.90318 1.24812 0.99282 0.99213 0.97097 1.69973 1.33064 1.39998 1.13744 0.86049 0.79561 0.82629 0.77533 1.20501 1.21742 1.21811 1.21144 0.92281 0.89436 0.95147 1.22933 0.97608 0.96767 0.95722 0.89230 1.22161 0.97204 0.91335 0.90643 1.19638 0.87227 0.84315 0.74947 1.90685 1.13925 1.87184 1.49792 1.22207 1.02849 0.90681 1.05565 1.22945 1.03171 1.01501 0.91316 1.22974 1.00140 0.95299 1.00182 0.92145 0.90725 0.90677 0.87254 0.86991 0.92420 0.90962 0.93525 0.93206 0.93759 0.94471 0.96078 0.90198 0.91587 0.85587 0.88281 0.87763 0.87890 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.26 59.84 0.61 1.36 16 2 N -0.60 -7.46 2.36 -182.96 -0.43 -7.89 16 3 C 0.10 1.33 4.92 -5.19 -0.03 1.30 16 4 C 0.51 8.72 7.90 -10.98 -0.09 8.63 16 5 O -0.54 -11.02 16.74 5.55 0.09 -10.93 16 6 N -0.61 -10.22 3.31 -172.15 -0.57 -10.79 16 7 C 0.12 2.16 6.23 -3.57 -0.02 2.14 16 8 C -0.12 -2.21 4.01 -88.60 -0.36 -2.57 16 9 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 10 C 0.19 4.30 4.77 -3.32 -0.02 4.29 16 11 N -0.60 -14.57 3.39 -171.50 -0.58 -15.16 16 12 C -0.23 -6.13 10.25 -15.06 -0.15 -6.29 16 13 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 14 C -0.01 -0.21 5.48 -17.42 -0.10 -0.31 16 15 N -0.92 -26.43 10.25 55.49 0.57 -25.86 16 16 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.15 2.78 6.41 -3.43 -0.02 2.76 16 21 C -0.11 -1.77 4.14 -88.24 -0.37 -2.14 16 22 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 23 C 0.11 1.66 5.87 -3.28 -0.02 1.64 16 24 C 0.55 7.53 7.46 -10.98 -0.08 7.45 16 25 O -0.54 -9.28 15.84 5.55 0.09 -9.19 16 26 C -0.19 -1.88 5.28 -91.77 -0.48 -2.37 16 27 C -0.15 -1.13 10.24 -26.69 -0.27 -1.41 16 28 C -0.15 -1.31 10.05 -26.69 -0.27 -1.58 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.07 0.58 6.00 -51.93 -0.31 0.27 16 32 H 0.11 1.16 8.07 -51.93 -0.42 0.74 16 33 H 0.11 1.44 7.16 -51.93 -0.37 1.07 16 34 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.07 1.41 7.44 -51.93 -0.39 1.02 16 36 H 0.05 1.22 7.40 -51.93 -0.38 0.84 16 37 H 0.05 1.30 6.58 -51.92 -0.34 0.96 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 39 H 0.04 0.67 7.98 -51.92 -0.41 0.26 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 1.35 7.76 -51.93 -0.40 0.94 16 42 H 0.07 0.81 7.61 -51.93 -0.40 0.42 16 43 H 0.13 1.01 6.45 -51.93 -0.33 0.68 16 44 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.11 1.13 7.67 -51.92 -0.40 0.73 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -34.71 375.49 -9.36 -44.07 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.51 Total: 0.57 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -1.66 Total: 12.92 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -1.01 Total: -59.70 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.71 -9.36 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.156 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds