Wall clock time and date at job start Fri Apr 10 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 O 1.21283 * 119.99839 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99760 * 179.97438 * 4 3 2 7 7 C 1.46668 * 125.33232 * 180.02562 * 6 4 3 8 8 C 1.53724 * 107.93995 * 180.54925 * 7 6 4 9 9 H 1.09003 * 112.56502 * 139.72643 * 8 7 6 10 10 C 1.53696 * 109.33980 * 266.24939 * 8 7 6 11 11 N 1.47166 * 107.73492 * 128.69205 * 10 8 7 12 12 C 1.36935 * 125.25546 * 180.39735 * 11 10 8 13 13 H 1.08005 * 120.00510 * 179.13832 * 12 11 10 14 14 C 1.38819 * 120.00217 * 359.14496 * 12 11 10 15 15 N 1.31626 * 119.99370 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00361 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46736 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47336 * 119.99654 * 16 14 12 19 19 H 1.48499 * 109.46663 * 239.99830 * 16 14 12 20 20 C 1.46741 * 109.41021 * 359.65905 * 11 10 8 21 21 C 1.53925 * 106.72131 * 342.40170 * 20 11 10 22 22 H 1.09001 * 113.01171 * 150.83699 * 21 20 11 23 23 C 1.46771 * 125.33926 * 359.69590 * 6 4 3 24 24 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 25 25 O 1.21283 * 120.00463 * 179.97438 * 24 2 1 26 26 C 1.50700 * 119.99675 * 359.72090 * 24 2 1 27 27 C 1.53002 * 117.49942 * 249.02519 * 26 24 2 28 28 C 1.53005 * 117.50073 * 180.36469 * 26 24 2 29 29 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 30 30 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 33 33 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 34 34 H 1.09008 * 109.77190 * 300.16476 * 7 6 4 35 35 H 1.08998 * 109.77324 * 60.92329 * 7 6 4 36 36 H 1.09003 * 109.76304 * 247.20103 * 10 8 7 37 37 H 1.09009 * 109.75858 * 7.91480 * 10 8 7 38 38 H 0.97000 * 119.98995 * 179.97438 * 15 14 12 39 39 H 1.09008 * 110.00823 * 223.08685 * 20 11 10 40 40 H 1.08999 * 110.00972 * 101.71971 * 20 11 10 41 41 H 1.08996 * 110.02898 * 280.76983 * 23 6 4 42 42 H 1.08994 * 110.03008 * 42.19351 * 23 6 4 43 43 H 1.09001 * 115.55204 * 34.69144 * 26 24 2 44 44 H 1.09008 * 117.49817 * 359.97438 * 27 26 24 45 45 H 1.09000 * 117.50215 * 145.01570 * 27 26 24 46 46 H 1.08994 * 117.50196 * 214.97848 * 28 26 24 47 47 H 1.09009 * 117.49229 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0549 1.0211 -2.3427 6 7 3.1107 2.8516 -1.6671 7 6 3.4178 3.3849 -2.9984 8 6 4.1927 4.6998 -2.8146 9 1 5.0080 4.8083 -3.5299 10 6 3.2075 5.8792 -2.8416 11 7 3.4616 6.7029 -1.6489 12 6 2.7787 7.8418 -1.3147 13 1 3.0275 8.3746 -0.4088 14 6 1.7665 8.3117 -2.1403 15 7 1.4635 7.6626 -3.2446 16 14 0.8344 9.8649 -1.6842 17 1 1.3625 10.4011 -0.4040 18 1 1.0078 10.8789 -2.7552 19 1 -0.6085 9.5491 -1.5304 20 6 4.5481 6.1042 -0.8651 21 6 4.6879 4.6475 -1.3425 22 1 5.7026 4.2621 -1.2432 23 6 3.6314 3.7673 -0.6450 24 6 2.1389 -1.1672 -0.0005 25 8 3.3517 -1.1672 -0.0010 26 6 1.3854 -2.4723 0.0053 27 6 1.4583 -3.3245 1.2739 28 6 2.2075 -3.7627 0.0130 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1384 0.5137 34 1 4.0294 2.6705 -3.5497 35 1 2.4924 3.5750 -3.5420 36 1 3.3801 6.4832 -3.7324 37 1 2.1839 5.5043 -2.8431 38 1 0.7559 7.9908 -3.8213 39 1 4.2990 6.1267 0.1958 40 1 5.4776 6.6454 -1.0419 41 1 2.8249 4.3869 -0.2531 42 1 4.0939 3.2007 0.1631 43 1 0.4477 -2.4763 -0.5505 44 1 2.0516 -2.9413 2.1042 45 1 0.5687 -3.8893 1.5526 46 1 1.8106 -4.6156 -0.5373 47 1 3.2935 -3.6675 0.0135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754842634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:53 Heat of formation + Delta-G solvation = -21.329442 kcal Electronic energy + Delta-G solvation = -27866.318008 eV Core-core repulsion = 24050.310073 eV Total energy + Delta-G solvation = -3816.007935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77537 -41.01979 -39.56025 -37.20811 -36.63808 -36.39752 -34.13896 -32.25828 -31.09764 -30.10428 -27.67155 -27.22196 -27.03963 -25.14289 -23.96119 -23.30318 -21.85224 -20.89574 -20.71001 -19.86481 -18.89700 -18.62348 -18.33349 -17.48462 -17.28021 -16.73539 -16.48872 -15.93108 -15.89214 -15.53727 -15.43283 -14.85297 -14.67137 -14.46153 -14.27436 -13.92995 -13.65767 -13.63597 -13.43846 -13.30147 -13.23654 -13.08392 -12.94004 -12.74742 -12.67703 -12.42992 -11.93896 -11.90630 -11.86099 -11.55284 -11.52912 -11.42435 -11.36680 -11.25353 -10.96609 -10.70289 -9.80867 -9.70458 -8.86395 -7.83981 -5.18775 1.30607 1.46681 1.47154 1.48900 1.57444 1.74544 2.15218 2.50423 2.90234 3.26799 3.34774 3.46716 3.52195 3.68064 3.80900 3.84204 3.95188 3.97504 4.05467 4.14457 4.22002 4.26063 4.30372 4.31380 4.50209 4.55563 4.66898 4.71828 4.74121 4.82080 4.82763 4.90893 4.93698 5.04518 5.05280 5.09454 5.15755 5.22687 5.30943 5.38842 5.50330 5.62999 5.77545 6.21469 6.23394 6.44897 6.97878 7.07717 7.11587 7.80901 8.42984 9.26379 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.002846 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.339284 B = 9835.197268 C =10315.909345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.599 5.599 3 C 0.105 3.895 4 C 0.504 3.496 5 O -0.582 6.582 6 N -0.609 5.609 7 C 0.126 3.874 8 C -0.113 4.113 9 H 0.111 0.889 10 C 0.200 3.800 11 N -0.624 5.624 12 C -0.234 4.234 13 H 0.088 0.912 14 C -0.069 4.069 15 N -0.953 5.953 16 Si 0.975 3.025 17 H -0.262 1.262 18 H -0.296 1.296 19 H -0.296 1.296 20 C 0.141 3.859 21 C -0.095 4.095 22 H 0.130 0.870 23 C 0.112 3.888 24 C 0.538 3.462 25 O -0.585 6.585 26 C -0.206 4.206 27 C -0.127 4.127 28 C -0.158 4.158 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.005 0.995 37 H 0.009 0.991 38 H 0.243 0.757 39 H 0.052 0.948 40 H 0.031 0.969 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.146 0.854 44 H 0.092 0.908 45 H 0.136 0.864 46 H 0.126 0.874 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 -19.155 11.277 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C -0.021 4.021 4 C 0.293 3.707 5 O -0.462 6.462 6 N -0.342 5.342 7 C 0.003 3.997 8 C -0.133 4.133 9 H 0.129 0.871 10 C 0.075 3.925 11 N -0.350 5.350 12 C -0.363 4.363 13 H 0.106 0.894 14 C -0.262 4.262 15 N -0.602 5.602 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.224 1.224 19 H -0.223 1.223 20 C 0.016 3.984 21 C -0.114 4.114 22 H 0.148 0.852 23 C -0.010 4.010 24 C 0.329 3.671 25 O -0.466 6.466 26 C -0.226 4.226 27 C -0.164 4.164 28 C -0.195 4.195 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.163 0.837 44 H 0.110 0.890 45 H 0.154 0.846 46 H 0.144 0.856 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.308 -19.437 10.772 22.225 hybrid contribution -0.776 1.469 -0.801 1.844 sum -0.468 -17.968 9.971 20.555 Atomic orbital electron populations 1.22082 0.76582 1.04100 1.03713 1.47527 1.08657 1.04306 1.72437 1.21364 1.01194 0.87619 0.91962 1.21489 0.76806 0.79191 0.93216 1.90646 1.53013 1.54703 1.47856 1.48384 1.55590 1.21630 1.08573 1.21643 0.98625 0.94551 0.84900 1.22990 0.98247 0.93373 0.98648 0.87118 1.20825 0.93968 0.88704 0.89005 1.44654 1.39196 1.26792 1.24381 1.19500 1.11413 1.00001 1.05354 0.89447 1.25634 1.00799 1.02350 0.97392 1.70214 1.33575 1.41537 1.14902 0.85045 0.77829 0.79057 0.77637 1.18586 1.22380 1.22320 1.21363 0.90772 0.90944 0.95332 1.22989 0.99839 0.95206 0.93390 0.85204 1.22223 0.96568 0.91212 0.91030 1.20381 0.87038 0.85736 0.73952 1.90648 1.15932 1.87954 1.52052 1.22284 1.03329 0.88997 1.08029 1.23061 1.03636 0.99707 0.90006 1.23045 0.98951 0.95579 1.01912 0.89143 0.91785 0.89320 0.84540 0.86377 0.91368 0.93950 0.97687 0.97245 0.94718 0.92946 0.95146 0.92028 0.87551 0.83659 0.88959 0.84556 0.85633 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.26 127.77 1.31 2.55 16 2 N -0.60 -14.18 2.36 -851.14 -2.01 -16.19 16 3 C 0.11 2.60 4.92 85.64 0.42 3.03 16 4 C 0.50 17.01 7.90 87.66 0.69 17.70 16 5 O -0.58 -24.09 16.74 -3.04 -0.05 -24.14 16 6 N -0.61 -20.09 3.31 -816.96 -2.71 -22.80 16 7 C 0.13 4.52 6.23 86.59 0.54 5.06 16 8 C -0.11 -3.99 4.01 -9.49 -0.04 -4.03 16 9 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 10 C 0.20 9.64 4.77 86.49 0.41 10.05 16 11 N -0.62 -30.21 3.39 -696.51 -2.36 -32.57 16 12 C -0.23 -12.54 10.25 84.04 0.86 -11.68 16 13 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 14 C -0.07 -3.87 5.48 84.86 0.47 -3.40 16 15 N -0.95 -57.20 10.25 21.65 0.22 -56.98 16 16 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 17 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 19 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 20 C 0.14 5.05 6.41 86.65 0.56 5.61 16 21 C -0.09 -2.77 4.14 -9.25 -0.04 -2.81 16 22 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 23 C 0.11 3.13 5.87 86.73 0.51 3.64 16 24 C 0.54 14.28 7.46 87.66 0.65 14.93 16 25 O -0.59 -20.19 15.84 -3.04 -0.05 -20.24 16 26 C -0.21 -3.65 5.28 -11.54 -0.06 -3.71 16 27 C -0.13 -1.55 10.24 30.62 0.31 -1.23 16 28 C -0.16 -2.54 10.05 30.62 0.31 -2.23 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.18 8.07 -2.39 -0.02 1.16 16 31 H 0.09 1.17 6.00 -2.39 -0.01 1.16 16 32 H 0.14 2.59 8.07 -2.39 -0.02 2.57 16 33 H 0.12 2.81 7.16 -2.39 -0.02 2.79 16 34 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.04 1.76 7.44 -2.39 -0.02 1.74 16 36 H 0.00 0.27 7.40 -2.39 -0.02 0.25 16 37 H 0.01 0.52 6.58 -2.38 -0.02 0.51 16 38 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.05 1.74 7.98 -2.38 -0.02 1.73 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.98 7.76 -2.39 -0.02 1.96 16 42 H 0.11 2.18 7.61 -2.39 -0.02 2.16 16 43 H 0.15 1.95 6.45 -2.39 -0.02 1.94 16 44 H 0.09 1.27 8.14 -2.38 -0.02 1.26 16 45 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.76 7.67 -2.38 -0.02 1.75 16 Total: -1.00 -80.27 375.49 2.94 -77.33 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.96 Total: 14.97 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 6.91 Total: 33.46 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -6.85 Total: -128.53 kcal Atomic # 8 Polarization: -44.28 SS G_CDS: -0.10 Total: -44.38 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -80.27 2.94 -77.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754842634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.997 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds