Wall clock time and date at job start Fri Apr 10 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47058 * 2 1 4 4 N 1.46504 * 109.45701 * 305.15183 * 3 2 1 5 5 C 1.36933 * 120.00282 * 298.64456 * 4 3 2 6 6 H 1.07998 * 119.99883 * 354.41815 * 5 4 3 7 7 C 1.38816 * 120.00170 * 174.42197 * 5 4 3 8 8 N 1.31615 * 119.99661 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99884 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46601 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47303 * 300.00083 * 9 7 5 12 12 H 1.48498 * 109.47040 * 60.00153 * 9 7 5 13 13 C 1.53038 * 109.45060 * 65.11737 * 3 2 1 14 14 C 1.53195 * 109.31182 * 181.37719 * 13 3 2 15 15 N 1.46925 * 108.77642 * 305.37111 * 14 13 3 16 16 C 1.34778 * 120.62626 * 233.58500 * 15 14 13 17 17 O 1.21278 * 119.99837 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00153 * 0.02562 * 16 15 14 19 19 C 1.50699 * 109.47130 * 179.97438 * 18 16 15 20 20 N 1.30714 * 125.52089 * 90.02867 * 19 18 16 21 21 N 1.40449 * 106.79466 * 179.97438 * 20 19 18 22 22 H 0.96995 * 126.82747 * 180.02562 * 21 20 19 23 23 C 1.34434 * 106.34782 * 359.97438 * 21 20 19 24 24 C 1.50700 * 125.95986 * 180.02562 * 23 21 20 25 25 N 1.30830 * 108.08151 * 359.75684 * 23 21 20 26 26 C 1.46920 * 118.74023 * 53.60505 * 15 14 13 27 27 C 1.53042 * 109.45996 * 185.18457 * 3 2 1 28 28 H 1.08998 * 109.47027 * 174.46553 * 1 2 3 29 29 H 1.09001 * 109.46830 * 294.46755 * 1 2 3 30 30 H 1.08998 * 109.46766 * 54.46549 * 1 2 3 31 31 H 1.08992 * 109.47306 * 239.99743 * 2 1 3 32 32 H 1.09001 * 109.47046 * 119.99263 * 2 1 3 33 33 H 0.97002 * 119.99690 * 118.64042 * 4 3 2 34 34 H 0.97003 * 120.00097 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.49726 * 301.33283 * 13 3 2 36 36 H 1.09003 * 109.49446 * 61.42769 * 13 3 2 37 37 H 1.08995 * 109.58476 * 185.57504 * 14 13 3 38 38 H 1.09004 * 109.57980 * 65.15804 * 14 13 3 39 39 H 1.09000 * 109.47447 * 300.00208 * 18 16 15 40 40 H 1.09003 * 109.46823 * 60.00449 * 18 16 15 41 41 H 1.09002 * 109.47497 * 89.99610 * 24 23 21 42 42 H 1.09001 * 109.47098 * 210.00265 * 24 23 21 43 43 H 1.09005 * 109.46944 * 329.99765 * 24 23 21 44 44 H 1.09000 * 109.58391 * 186.60254 * 26 15 14 45 45 H 1.08999 * 109.58547 * 66.18148 * 26 15 14 46 46 H 1.09001 * 109.49191 * 298.57707 * 27 3 2 47 47 H 1.08992 * 109.49675 * 58.63889 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4529 2.1677 -1.1294 5 6 1.6993 1.7540 -2.4113 6 1 2.3971 0.9504 -2.5947 7 6 1.0522 2.3676 -3.4752 8 7 0.2022 3.3473 -3.2517 9 14 1.3889 1.8037 -5.2239 10 1 0.5792 2.6133 -6.1695 11 1 2.8309 1.9793 -5.5317 12 1 1.0245 0.3706 -5.3607 13 6 1.6375 2.1254 1.3091 14 6 2.1197 3.5794 1.2912 15 7 3.5638 3.5954 1.0214 16 6 4.4092 4.2448 1.8461 17 8 5.5992 4.2511 1.6123 18 6 3.8758 4.9631 3.0587 19 6 5.0175 5.6015 3.8071 20 7 5.4750 6.8097 3.6078 21 7 6.5323 6.9977 4.5130 22 1 7.0771 7.7939 4.6133 23 6 6.6383 5.8553 5.2136 24 6 7.6365 5.5776 6.3079 25 7 5.7200 5.0285 4.7836 26 6 4.0688 2.8904 -0.1646 27 6 3.5649 1.4442 -0.1304 28 1 -0.3633 -1.0229 -0.0991 29 1 -0.3633 0.4256 0.9354 30 1 -0.3633 0.5973 -0.8363 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 0.8895 2.9409 -0.9692 34 1 -0.2503 3.7759 -3.9951 35 1 0.5526 2.1031 1.4124 36 1 2.0942 1.6009 2.1484 37 1 1.9234 4.0413 2.2588 38 1 1.5956 4.1284 0.5089 39 1 3.1713 5.7331 2.7443 40 1 3.3688 4.2505 3.7093 41 1 7.2156 5.8763 7.2680 42 1 7.8670 4.5125 6.3278 43 1 8.5489 6.1434 6.1195 44 1 5.1588 2.8979 -0.1575 45 1 3.7038 3.3834 -1.0656 46 1 4.0035 0.9262 0.7225 47 1 3.8518 0.9366 -1.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755069299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:04 Heat of formation + Delta-G solvation = 57.916216 kcal Electronic energy + Delta-G solvation = -27988.462615 eV Core-core repulsion = 24208.183782 eV Total energy + Delta-G solvation = -3780.278834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26404 -39.93296 -37.96752 -34.72334 -33.80954 -32.54733 -32.50633 -31.24810 -30.07915 -29.73523 -28.88690 -27.80633 -24.88831 -23.78134 -22.82384 -22.13540 -21.35747 -20.58770 -19.25858 -18.07651 -17.94125 -17.03750 -16.97152 -15.81620 -15.43562 -15.31265 -14.63113 -14.51665 -14.05646 -13.92971 -13.74237 -13.64684 -13.37206 -13.28056 -13.04894 -12.89797 -12.83321 -12.34228 -12.09941 -11.96343 -11.82563 -11.63240 -11.23238 -11.08904 -10.84210 -10.72291 -10.56621 -10.30779 -10.26686 -10.22476 -10.13595 -9.89041 -9.72458 -9.64006 -9.48980 -9.28815 -8.85032 -8.15966 -6.91928 -5.75759 -3.03459 1.45791 2.46788 2.67632 2.90131 3.41380 3.44695 3.49895 3.50721 3.82091 4.38291 4.57265 4.60254 4.76815 4.99535 5.04968 5.14364 5.29916 5.34659 5.42340 5.43915 5.51077 5.60036 5.64732 5.73037 5.88416 5.94786 6.03578 6.09932 6.12983 6.20806 6.23763 6.29546 6.34145 6.45763 6.56013 6.65816 6.73354 6.85682 6.88986 6.92658 6.99418 7.13342 7.26250 7.74495 7.78878 7.98049 8.43333 8.46380 9.54977 10.11150 10.47032 11.46623 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.002999 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.629231 B = 9334.830009 C = 9903.719665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.228 4.228 6 H 0.068 0.932 7 C -0.011 4.011 8 N -0.933 5.933 9 Si 0.899 3.101 10 H -0.293 1.293 11 H -0.287 1.287 12 H -0.288 1.288 13 C -0.132 4.132 14 C 0.108 3.892 15 N -0.597 5.597 16 C 0.521 3.479 17 O -0.545 6.545 18 C -0.050 4.050 19 C 0.256 3.744 20 N -0.304 5.304 21 N -0.484 5.484 22 H 0.438 0.562 23 C 0.280 3.720 24 C -0.076 4.076 25 N -0.530 5.530 26 C 0.123 3.877 27 C -0.134 4.134 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 3.693 19.460 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.359 4.359 6 H 0.086 0.914 7 C -0.207 4.207 8 N -0.581 5.581 9 Si 0.731 3.269 10 H -0.219 1.219 11 H -0.214 1.214 12 H -0.214 1.214 13 C -0.170 4.170 14 C -0.015 4.015 15 N -0.330 5.330 16 C 0.307 3.693 17 O -0.423 6.423 18 C -0.092 4.092 19 C -0.027 4.027 20 N -0.133 5.133 21 N -0.202 5.202 22 H 0.284 0.716 23 C 0.002 3.998 24 C -0.135 4.135 25 N -0.260 5.260 26 C 0.002 3.998 27 C -0.174 4.174 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.710 3.750 18.736 20.999 hybrid contribution 0.368 0.406 -0.936 1.085 sum 9.078 4.156 17.800 20.409 Atomic orbital electron populations 1.21669 0.96064 1.00062 1.02054 1.21889 0.96401 0.98028 0.99889 1.19540 0.90874 0.91135 0.87382 1.42435 1.58818 1.33654 1.00473 1.19036 1.19210 1.14456 0.83232 0.91370 1.24668 0.99355 0.99096 0.97547 1.69629 1.31608 1.26446 1.30427 0.86386 0.77407 0.77778 0.85332 1.21919 1.21423 1.21449 1.22126 1.01476 0.95018 0.98406 1.21800 0.80221 0.98166 1.01343 1.48048 1.07324 1.51674 1.25934 1.20024 0.86406 0.79322 0.83554 1.90685 1.15752 1.61714 1.74109 1.19972 0.93662 1.00589 0.94999 1.23319 0.96986 0.88944 0.93453 1.78003 1.03121 1.19656 1.12510 1.47928 1.28251 1.15293 1.28753 0.71637 1.24350 0.96502 0.83671 0.95320 1.20375 0.94562 1.05147 0.93426 1.70293 1.08907 1.31826 1.14942 1.21562 0.98731 0.92571 0.86963 1.22294 0.98312 0.95597 1.01203 0.94905 0.94319 0.90226 0.92285 0.94215 0.78228 0.93608 0.90367 0.91800 0.90730 0.89985 0.86530 0.86150 0.89074 0.88332 0.89955 0.90684 0.89550 0.93373 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.41 37.16 0.35 -2.08 16 2 C -0.12 -2.11 4.74 -26.73 -0.13 -2.24 16 3 C 0.20 3.57 0.43 -131.77 -0.06 3.52 16 4 N -0.71 -15.49 3.05 -47.19 -0.14 -15.63 16 5 C -0.23 -5.71 8.64 -15.06 -0.13 -5.84 16 6 H 0.07 1.70 6.76 -52.49 -0.35 1.35 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -26.54 13.07 55.49 0.73 -25.82 16 9 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C -0.13 -1.93 4.74 -26.61 -0.13 -2.05 16 14 C 0.11 1.53 6.07 -3.71 -0.02 1.50 16 15 N -0.60 -9.79 2.97 -172.78 -0.51 -10.30 16 16 C 0.52 8.81 7.69 -10.99 -0.08 8.73 16 17 O -0.54 -11.32 15.45 5.56 0.09 -11.24 16 18 C -0.05 -0.66 4.67 -29.04 -0.14 -0.80 16 19 C 0.26 3.86 6.63 -156.85 -1.04 2.82 16 20 N -0.30 -4.51 12.80 32.42 0.41 -4.10 16 21 N -0.48 -5.18 7.45 32.62 0.24 -4.94 16 22 H 0.44 2.87 8.96 -182.34 -1.63 1.23 16 23 C 0.28 3.01 8.24 -155.69 -1.28 1.73 16 24 C -0.08 -0.40 10.51 36.01 0.38 -0.02 16 25 N -0.53 -7.63 11.19 -8.16 -0.09 -7.72 16 26 C 0.12 2.27 6.17 -3.72 -0.02 2.25 16 27 C -0.13 -2.37 4.68 -26.61 -0.12 -2.49 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.59 6.81 -51.93 -0.35 0.23 16 30 H 0.08 1.65 7.19 -51.93 -0.37 1.28 16 31 H 0.06 1.11 7.65 -51.93 -0.40 0.72 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.38 8.97 6.52 -40.82 -0.27 8.70 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.11 6.63 -51.93 -0.34 0.76 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.80 5.93 -51.93 -0.31 0.49 16 38 H 0.08 1.32 6.97 -51.93 -0.36 0.95 16 39 H 0.12 1.30 7.94 -51.93 -0.41 0.89 16 40 H 0.12 1.31 7.69 -51.93 -0.40 0.91 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 1.44 7.01 -51.93 -0.36 1.07 16 45 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.39 7.14 -51.93 -0.37 1.02 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -34.22 371.22 -9.67 -43.89 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.44 Total: 8.84 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.52 Total: 4.64 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: 0.63 Total: -68.51 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.22 -9.67 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755069299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.804 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds