Wall clock time and date at job start Fri Apr 10 2020 18:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47058 * 2 1 4 4 N 1.46504 * 109.45701 * 305.15183 * 3 2 1 5 5 C 1.36933 * 120.00282 * 298.64456 * 4 3 2 6 6 H 1.07998 * 119.99883 * 354.41815 * 5 4 3 7 7 C 1.38816 * 120.00170 * 174.42197 * 5 4 3 8 8 N 1.31615 * 119.99661 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99884 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46601 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47303 * 300.00083 * 9 7 5 12 12 H 1.48498 * 109.47040 * 60.00153 * 9 7 5 13 13 C 1.53038 * 109.45060 * 65.11737 * 3 2 1 14 14 C 1.53195 * 109.31182 * 181.37719 * 13 3 2 15 15 N 1.46925 * 108.77642 * 305.37111 * 14 13 3 16 16 C 1.34778 * 120.62626 * 233.58500 * 15 14 13 17 17 O 1.21278 * 119.99837 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00153 * 0.02562 * 16 15 14 19 19 C 1.50699 * 109.47130 * 179.97438 * 18 16 15 20 20 N 1.30714 * 125.52089 * 90.02867 * 19 18 16 21 21 N 1.40449 * 106.79466 * 179.97438 * 20 19 18 22 22 H 0.96995 * 126.82747 * 180.02562 * 21 20 19 23 23 C 1.34434 * 106.34782 * 359.97438 * 21 20 19 24 24 C 1.50700 * 125.95986 * 180.02562 * 23 21 20 25 25 N 1.30830 * 108.08151 * 359.75684 * 23 21 20 26 26 C 1.46920 * 118.74023 * 53.60505 * 15 14 13 27 27 C 1.53042 * 109.45996 * 185.18457 * 3 2 1 28 28 H 1.08998 * 109.47027 * 174.46553 * 1 2 3 29 29 H 1.09001 * 109.46830 * 294.46755 * 1 2 3 30 30 H 1.08998 * 109.46766 * 54.46549 * 1 2 3 31 31 H 1.08992 * 109.47306 * 239.99743 * 2 1 3 32 32 H 1.09001 * 109.47046 * 119.99263 * 2 1 3 33 33 H 0.97002 * 119.99690 * 118.64042 * 4 3 2 34 34 H 0.97003 * 120.00097 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.49726 * 301.33283 * 13 3 2 36 36 H 1.09003 * 109.49446 * 61.42769 * 13 3 2 37 37 H 1.08995 * 109.58476 * 185.57504 * 14 13 3 38 38 H 1.09004 * 109.57980 * 65.15804 * 14 13 3 39 39 H 1.09000 * 109.47447 * 300.00208 * 18 16 15 40 40 H 1.09003 * 109.46823 * 60.00449 * 18 16 15 41 41 H 1.09002 * 109.47497 * 89.99610 * 24 23 21 42 42 H 1.09001 * 109.47098 * 210.00265 * 24 23 21 43 43 H 1.09005 * 109.46944 * 329.99765 * 24 23 21 44 44 H 1.09000 * 109.58391 * 186.60254 * 26 15 14 45 45 H 1.08999 * 109.58547 * 66.18148 * 26 15 14 46 46 H 1.09001 * 109.49191 * 298.57707 * 27 3 2 47 47 H 1.08992 * 109.49675 * 58.63889 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4529 2.1677 -1.1294 5 6 1.6993 1.7540 -2.4113 6 1 2.3971 0.9504 -2.5947 7 6 1.0522 2.3676 -3.4752 8 7 0.2022 3.3473 -3.2517 9 14 1.3889 1.8037 -5.2239 10 1 0.5792 2.6133 -6.1695 11 1 2.8309 1.9793 -5.5317 12 1 1.0245 0.3706 -5.3607 13 6 1.6375 2.1254 1.3091 14 6 2.1197 3.5794 1.2912 15 7 3.5638 3.5954 1.0214 16 6 4.4092 4.2448 1.8461 17 8 5.5992 4.2511 1.6123 18 6 3.8758 4.9631 3.0587 19 6 5.0175 5.6015 3.8071 20 7 5.4750 6.8097 3.6078 21 7 6.5323 6.9977 4.5130 22 1 7.0771 7.7939 4.6133 23 6 6.6383 5.8553 5.2136 24 6 7.6365 5.5776 6.3079 25 7 5.7200 5.0285 4.7836 26 6 4.0688 2.8904 -0.1646 27 6 3.5649 1.4442 -0.1304 28 1 -0.3633 -1.0229 -0.0991 29 1 -0.3633 0.4256 0.9354 30 1 -0.3633 0.5973 -0.8363 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 0.8895 2.9409 -0.9692 34 1 -0.2503 3.7759 -3.9951 35 1 0.5526 2.1031 1.4124 36 1 2.0942 1.6009 2.1484 37 1 1.9234 4.0413 2.2588 38 1 1.5956 4.1284 0.5089 39 1 3.1713 5.7331 2.7443 40 1 3.3688 4.2505 3.7093 41 1 7.2156 5.8763 7.2680 42 1 7.8670 4.5125 6.3278 43 1 8.5489 6.1434 6.1195 44 1 5.1588 2.8979 -0.1575 45 1 3.7038 3.3834 -1.0656 46 1 4.0035 0.9262 0.7225 47 1 3.8518 0.9366 -1.0512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755069299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:03 Heat of formation + Delta-G solvation = 34.878484 kcal Electronic energy + Delta-G solvation = -27989.461606 eV Core-core repulsion = 24208.183782 eV Total energy + Delta-G solvation = -3781.277825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.17101 -41.28829 -39.40732 -36.20913 -34.74368 -34.38926 -33.35243 -32.53960 -31.47316 -31.08755 -30.27367 -28.62688 -26.36303 -25.57437 -24.18116 -23.30166 -22.37799 -21.68829 -20.57333 -19.47219 -18.90239 -18.86923 -18.27589 -16.98341 -16.71728 -16.40592 -16.28459 -15.64935 -15.48355 -15.35394 -15.32349 -14.68301 -14.60792 -14.40742 -14.32571 -13.92320 -13.64755 -13.59107 -13.38745 -13.12264 -12.99565 -12.84795 -12.79807 -12.72932 -12.50605 -12.28619 -12.17951 -12.01983 -11.75891 -11.46259 -11.38119 -11.25206 -11.10523 -10.98744 -10.77689 -10.72406 -10.42973 -9.57825 -8.80033 -7.82542 -5.05421 0.56986 1.48890 1.49979 1.54317 1.60708 1.62736 1.75204 2.21767 2.63062 3.00175 3.50799 3.53397 3.60537 3.87843 3.90362 3.95246 4.15598 4.23978 4.31602 4.36925 4.39873 4.54591 4.60492 4.69787 4.72235 4.73114 4.77081 4.82341 4.88135 4.93933 5.05927 5.12803 5.17174 5.20511 5.25146 5.32868 5.35614 5.43067 5.45360 5.58922 5.67216 5.73390 5.81972 6.22008 6.41303 6.49581 7.07011 7.15061 7.49175 8.26744 8.50513 9.40545 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.002999 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.629231 B = 9334.830009 C = 9903.719665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.195 3.805 4 N -0.713 5.713 5 C -0.203 4.203 6 H 0.067 0.933 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.947 3.053 10 H -0.303 1.303 11 H -0.288 1.288 12 H -0.284 1.284 13 C -0.126 4.126 14 C 0.107 3.893 15 N -0.595 5.595 16 C 0.519 3.481 17 O -0.590 6.590 18 C -0.044 4.044 19 C 0.238 3.762 20 N -0.341 5.341 21 N -0.476 5.476 22 H 0.455 0.545 23 C 0.285 3.715 24 C -0.073 4.073 25 N -0.566 5.566 26 C 0.131 3.869 27 C -0.126 4.126 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.375 0.625 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 3.172 22.709 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.159 4.159 3 C 0.105 3.895 4 N -0.354 5.354 5 C -0.336 4.336 6 H 0.085 0.915 7 C -0.263 4.263 8 N -0.617 5.617 9 Si 0.779 3.221 10 H -0.229 1.229 11 H -0.215 1.215 12 H -0.210 1.210 13 C -0.164 4.164 14 C -0.015 4.015 15 N -0.327 5.327 16 C 0.307 3.693 17 O -0.471 6.471 18 C -0.085 4.085 19 C -0.045 4.045 20 N -0.171 5.171 21 N -0.196 5.196 22 H 0.303 0.697 23 C 0.007 3.993 24 C -0.132 4.132 25 N -0.296 5.296 26 C 0.008 3.992 27 C -0.166 4.166 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.208 0.792 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.079 0.921 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.211 3.214 22.023 24.087 hybrid contribution 0.354 0.554 -1.834 1.948 sum 9.566 3.768 20.189 22.656 Atomic orbital electron populations 1.21573 0.95825 1.00235 1.01516 1.21845 0.96489 0.97268 1.00254 1.19825 0.90371 0.91641 0.87705 1.42523 1.58528 1.33668 1.00631 1.19251 1.17003 1.12668 0.84664 0.91512 1.25200 1.00617 1.00243 1.00244 1.69749 1.33459 1.28151 1.30344 0.85591 0.76804 0.77272 0.82394 1.22941 1.21499 1.21043 1.22105 1.02388 0.94919 0.96954 1.21957 0.78337 0.98253 1.02971 1.48074 1.08356 1.51208 1.25023 1.20674 0.85770 0.78612 0.84201 1.90659 1.17831 1.63227 1.75354 1.20043 0.93683 1.01334 0.93459 1.23610 0.97663 0.89216 0.94011 1.77880 1.04796 1.20221 1.14207 1.47860 1.27583 1.16212 1.27946 0.69692 1.25292 0.95990 0.82789 0.95198 1.20648 0.94380 1.05602 0.92562 1.70286 1.10337 1.33248 1.15764 1.21240 0.97930 0.93107 0.86893 1.22203 0.98388 0.94858 1.01116 0.93690 0.91965 0.94308 0.94578 0.91169 0.79196 0.94643 0.89252 0.89215 0.86242 0.92142 0.84476 0.83214 0.86647 0.88449 0.87172 0.91920 0.92985 0.91439 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.41 71.98 0.68 -3.66 16 2 C -0.12 -3.85 4.74 30.60 0.15 -3.71 16 3 C 0.19 6.60 0.43 3.63 0.00 6.60 16 4 N -0.71 -31.21 3.05 -303.21 -0.92 -32.13 16 5 C -0.20 -10.36 8.64 84.04 0.73 -9.63 16 6 H 0.07 3.39 6.76 -2.91 -0.02 3.37 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.96 -56.57 13.07 21.65 0.28 -56.29 16 9 Si 0.95 45.98 29.55 68.60 2.03 48.01 16 10 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 C -0.13 -3.27 4.74 30.67 0.15 -3.12 16 14 C 0.11 2.78 6.07 86.36 0.52 3.30 16 15 N -0.59 -18.89 2.97 -818.93 -2.43 -21.32 16 16 C 0.52 17.04 7.69 87.66 0.67 17.72 16 17 O -0.59 -24.66 15.45 -3.02 -0.05 -24.71 16 18 C -0.04 -1.06 4.67 29.10 0.14 -0.92 16 19 C 0.24 6.87 6.63 138.63 0.92 7.79 16 20 N -0.34 -9.84 12.80 -51.33 -0.66 -10.50 16 21 N -0.48 -9.48 7.45 -50.70 -0.38 -9.85 16 22 H 0.45 5.17 8.96 -213.10 -1.91 3.26 16 23 C 0.29 5.57 8.24 138.22 1.14 6.71 16 24 C -0.07 -0.55 10.51 71.24 0.75 0.20 16 25 N -0.57 -15.40 11.19 -179.72 -2.01 -17.41 16 26 C 0.13 4.90 6.17 86.36 0.53 5.44 16 27 C -0.13 -4.35 4.68 30.67 0.14 -4.21 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.70 6.81 -2.39 -0.02 1.68 16 30 H 0.04 1.57 7.19 -2.39 -0.02 1.56 16 31 H 0.04 1.32 7.65 -2.39 -0.02 1.30 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.37 17.78 6.52 -92.71 -0.60 17.17 16 34 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.09 2.20 6.63 -2.39 -0.02 2.18 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.12 2.07 5.93 -2.39 -0.01 2.05 16 38 H 0.06 1.88 6.97 -2.39 -0.02 1.87 16 39 H 0.14 2.72 7.94 -2.39 -0.02 2.70 16 40 H 0.15 2.69 7.69 -2.39 -0.02 2.67 16 41 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 44 H 0.06 2.48 7.01 -2.39 -0.02 2.46 16 45 H 0.05 2.29 7.74 -2.39 -0.02 2.27 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 2.11 7.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.93 371.22 1.33 -76.60 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -1.51 Total: 28.54 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.98 Total: 19.06 kcal Atomic # 7 Polarization: -141.39 SS G_CDS: -6.12 Total: -147.51 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.93 1.33 -76.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755069299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.476 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds