Wall clock time and date at job start Fri Apr 10 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47121 * 60.00002 * 9 7 5 11 11 H 1.48503 * 109.47160 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47085 * 299.99898 * 9 7 5 13 13 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 14 14 N 1.30295 * 126.34489 * 299.69277 * 13 2 1 15 15 N 1.28525 * 110.05312 * 179.82021 * 14 13 2 16 16 C 1.31218 * 109.85847 * 0.45047 * 15 14 13 17 17 N 1.38583 * 126.47482 * 179.69569 * 16 15 14 18 18 C 1.46846 * 110.99903 * 236.09133 * 17 16 15 19 19 C 1.53037 * 109.52307 * 174.16158 * 18 17 16 20 20 C 1.53113 * 109.28396 * 59.17249 * 19 18 17 21 21 C 1.53116 * 109.16029 * 302.35160 * 20 19 18 22 22 H 1.09003 * 109.50530 * 297.70597 * 21 20 19 23 23 C 1.50708 * 109.50343 * 177.63218 * 21 20 19 24 24 N 1.34772 * 120.00063 * 59.99712 * 23 21 20 25 25 O 1.21280 * 119.99506 * 239.99703 * 23 21 20 26 26 C 1.46842 * 111.00469 * 111.87674 * 17 16 15 27 27 N 1.36450 * 107.05250 * 359.72984 * 16 15 14 28 28 C 1.46504 * 127.13526 * 179.97438 * 27 16 15 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 34 34 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46195 * 294.17214 * 18 17 16 36 36 H 1.09004 * 109.46699 * 54.14214 * 18 17 16 37 37 H 1.09001 * 109.50669 * 179.12117 * 19 18 17 38 38 H 1.09004 * 109.50260 * 299.23147 * 19 18 17 39 39 H 1.09008 * 109.51856 * 62.25071 * 20 19 18 40 40 H 1.08996 * 109.52960 * 182.37882 * 20 19 18 41 41 H 0.97000 * 119.99840 * 359.97438 * 24 23 21 42 42 H 0.97000 * 120.00139 * 179.97438 * 24 23 21 43 43 H 1.09004 * 109.45914 * 305.85939 * 26 17 16 44 44 H 1.09002 * 109.46093 * 65.82165 * 26 17 16 45 45 H 1.09004 * 109.46865 * 270.02389 * 28 27 16 46 46 H 1.08999 * 109.47194 * 30.02352 * 28 27 16 47 47 H 1.08991 * 109.47086 * 150.02571 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.0195 0.6701 5.3095 11 1 1.9943 -0.1367 6.4621 12 1 2.0917 1.9238 5.1865 13 6 2.0324 -0.7104 -1.2304 14 7 1.7997 -1.9506 -1.5552 15 7 2.3763 -2.2301 -2.6693 16 6 3.0209 -1.1772 -3.1140 17 7 3.7642 -1.0985 -4.2810 18 6 5.1392 -0.6656 -4.0009 19 6 5.9675 -0.7299 -5.2861 20 6 5.3321 0.1776 -6.3430 21 6 3.8856 -0.2643 -6.5809 22 1 3.8753 -1.2830 -6.9688 23 6 3.2345 0.6600 -7.5775 24 7 3.7458 0.7808 -8.8186 25 8 2.2504 1.2950 -7.2625 26 6 3.1176 -0.2135 -5.2582 27 7 2.8217 -0.1747 -2.2100 28 6 3.3455 1.1919 -2.2752 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.9235 -1.8416 4.7319 35 1 5.1286 0.3580 -3.6265 36 1 5.5810 -1.3218 -3.2509 37 1 6.9839 -0.3937 -5.0813 38 1 5.9901 -1.7559 -5.6536 39 1 5.3447 1.2096 -5.9921 40 1 5.8947 0.1025 -7.2736 41 1 4.5331 0.2732 -9.0703 42 1 3.3266 1.3754 -9.4601 43 1 2.0909 -0.5413 -5.4214 44 1 3.1164 0.8081 -4.8780 45 1 4.3144 1.2338 -1.7775 46 1 3.4595 1.4880 -3.3179 47 1 2.6523 1.8707 -1.7784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772352330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:13 Heat of formation + Delta-G solvation = 34.007650 kcal Electronic energy + Delta-G solvation = -27876.874572 eV Core-core repulsion = 24095.558985 eV Total energy + Delta-G solvation = -3781.315587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.68144 -40.53559 -38.57766 -35.40350 -34.92500 -34.15720 -33.26512 -32.08615 -31.48767 -28.67161 -27.58869 -26.92707 -24.92391 -24.55376 -24.01465 -22.01763 -21.67215 -20.74741 -20.10157 -19.11450 -18.00556 -17.40440 -16.80018 -16.49937 -16.05261 -15.84767 -15.46762 -15.11884 -14.80681 -14.52060 -14.48749 -14.10823 -13.70016 -13.46599 -13.28961 -13.20632 -13.03485 -12.80688 -12.34208 -11.93850 -11.78420 -11.44529 -11.30571 -11.28974 -11.08425 -10.98704 -10.91974 -10.75763 -10.48080 -10.25189 -10.19585 -10.13717 -9.88427 -9.80784 -9.60371 -9.12661 -8.94980 -8.40906 -8.35141 -5.99788 -4.03616 2.05804 2.20797 2.57135 2.95425 3.32555 3.33456 3.38017 3.39642 3.44485 4.09443 4.26953 4.30643 4.44020 4.53645 4.66701 4.70731 4.87111 4.96040 5.01679 5.06610 5.09676 5.13602 5.30219 5.35355 5.37473 5.42430 5.48831 5.55595 5.62459 5.78846 5.94074 6.05796 6.11964 6.23783 6.26711 6.31693 6.50223 6.71040 6.76046 6.84770 6.89787 7.05620 7.41396 7.62257 7.79350 7.81857 7.99422 8.35245 9.01687 9.26269 9.59831 11.11211 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.002722 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.824355 B =10283.524640 C =10536.339547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.004 4.004 3 H 0.071 0.929 4 C 0.039 3.961 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.223 3.777 14 N -0.288 5.288 15 N -0.262 5.262 16 C 0.314 3.686 17 N -0.436 5.436 18 C 0.047 3.953 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.105 4.105 22 H 0.115 0.885 23 C 0.525 3.475 24 N -0.854 5.854 25 O -0.540 6.540 26 C 0.075 3.925 27 N -0.505 5.505 28 C 0.069 3.931 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.402 0.598 42 H 0.402 0.598 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 6.851 -25.321 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.025 4.025 3 H 0.089 0.911 4 C 0.001 3.999 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.044 4.044 14 N -0.127 5.127 15 N -0.104 5.104 16 C -0.041 4.041 17 N -0.159 5.159 18 C -0.081 4.081 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.127 4.127 22 H 0.133 0.867 23 C 0.309 3.691 24 N -0.418 5.418 25 O -0.416 6.416 26 C -0.053 4.053 27 N -0.202 5.202 28 C -0.075 4.075 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.230 0.770 42 H 0.233 0.767 43 H 0.110 0.890 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.727 5.158 -24.967 26.640 hybrid contribution 0.674 2.578 0.626 2.738 sum 8.401 7.737 -24.341 26.887 Atomic orbital electron populations 1.21679 0.93493 1.02622 1.00633 1.20024 0.96364 0.97533 0.88607 0.91060 1.19098 0.96100 0.96329 0.88353 1.21098 1.35612 1.08512 0.90737 0.92410 1.25001 0.95154 0.95031 0.99070 1.69976 1.38322 1.20915 1.23671 0.86662 0.78993 0.79931 0.82421 1.20126 1.21311 1.20345 1.25619 0.93547 0.92131 0.93131 1.74227 1.20512 1.11040 1.06910 1.74454 1.09690 1.20560 1.05704 1.22669 1.03457 0.86722 0.91254 1.58813 1.01155 1.51129 1.04847 1.22393 0.86979 0.99833 0.98880 1.21583 0.98411 1.01185 0.93874 1.21628 0.93149 1.00142 1.00212 1.21325 0.96059 1.00769 0.94536 0.86748 1.20516 0.83596 0.82064 0.82956 1.43845 1.34187 1.49417 1.14358 1.90786 1.26071 1.46274 1.78420 1.21984 0.98591 0.94978 0.89722 1.47235 1.40398 1.12268 1.20310 1.22208 1.01147 0.80639 1.03488 0.91940 0.90632 0.94971 0.94855 0.96863 0.92854 0.93726 0.89404 0.90164 0.90001 0.91363 0.90669 0.76954 0.76728 0.89042 0.93173 0.90059 0.90033 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.99 37.16 0.33 -2.11 16 2 C 0.00 -0.08 2.70 -91.77 -0.25 -0.33 16 3 H 0.07 1.35 6.94 -51.93 -0.36 0.99 16 4 C 0.04 1.02 4.43 -27.89 -0.12 0.89 16 5 C -0.52 -14.21 8.41 -34.44 -0.29 -14.50 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.22 4.54 6.58 -154.02 -1.01 3.53 16 14 N -0.29 -6.53 12.18 32.99 0.40 -6.13 16 15 N -0.26 -5.54 12.23 30.31 0.37 -5.17 16 16 C 0.31 5.38 6.65 -318.87 -2.12 3.27 16 17 N -0.44 -5.62 4.70 -174.55 -0.82 -6.44 16 18 C 0.05 0.46 5.13 -3.83 -0.02 0.44 16 19 C -0.11 -0.70 6.09 -26.65 -0.16 -0.86 16 20 C -0.11 -0.59 5.16 -26.61 -0.14 -0.73 16 21 C -0.11 -0.79 2.69 -91.69 -0.25 -1.04 16 22 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 23 C 0.52 4.43 7.43 -10.98 -0.08 4.35 16 24 N -0.85 -3.58 8.78 31.22 0.27 -3.30 16 25 O -0.54 -7.16 16.82 5.56 0.09 -7.07 16 26 C 0.08 0.85 3.83 -3.84 -0.01 0.83 16 27 N -0.50 -8.43 3.21 -121.46 -0.39 -8.82 16 28 C 0.07 0.82 9.20 59.85 0.55 1.37 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.04 0.41 5.66 -51.93 -0.29 0.12 16 36 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 40 H 0.07 0.20 7.65 -51.93 -0.40 -0.20 16 41 H 0.40 0.47 8.30 -40.82 -0.34 0.13 16 42 H 0.40 1.42 8.93 -40.82 -0.36 1.06 16 43 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 44 H 0.05 0.58 5.68 -51.93 -0.29 0.28 16 45 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 46 H 0.08 0.80 4.97 -51.93 -0.26 0.55 16 47 H 0.09 1.06 7.23 -51.93 -0.38 0.69 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -36.76 371.73 -9.61 -46.37 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.18 Total: -1.96 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.67 Total: -3.31 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.57 Total: -55.91 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.09 Total: -7.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.76 -9.61 -46.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772352330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.375 kcal (2) G-P(sol) polarization free energy of solvation -36.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds