Wall clock time and date at job start Fri Apr 10 2020 18:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47121 * 60.00002 * 9 7 5 11 11 H 1.48503 * 109.47160 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47085 * 299.99898 * 9 7 5 13 13 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 14 14 N 1.30295 * 126.34489 * 299.69277 * 13 2 1 15 15 N 1.28525 * 110.05312 * 179.82021 * 14 13 2 16 16 C 1.31218 * 109.85847 * 0.45047 * 15 14 13 17 17 N 1.38583 * 126.47482 * 179.69569 * 16 15 14 18 18 C 1.46846 * 110.99903 * 236.09133 * 17 16 15 19 19 C 1.53037 * 109.52307 * 174.16158 * 18 17 16 20 20 C 1.53113 * 109.28396 * 59.17249 * 19 18 17 21 21 C 1.53116 * 109.16029 * 302.35160 * 20 19 18 22 22 H 1.09003 * 109.50530 * 297.70597 * 21 20 19 23 23 C 1.50708 * 109.50343 * 177.63218 * 21 20 19 24 24 N 1.34772 * 120.00063 * 59.99712 * 23 21 20 25 25 O 1.21280 * 119.99506 * 239.99703 * 23 21 20 26 26 C 1.46842 * 111.00469 * 111.87674 * 17 16 15 27 27 N 1.36450 * 107.05250 * 359.72984 * 16 15 14 28 28 C 1.46504 * 127.13526 * 179.97438 * 27 16 15 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 33 33 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 34 34 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46195 * 294.17214 * 18 17 16 36 36 H 1.09004 * 109.46699 * 54.14214 * 18 17 16 37 37 H 1.09001 * 109.50669 * 179.12117 * 19 18 17 38 38 H 1.09004 * 109.50260 * 299.23147 * 19 18 17 39 39 H 1.09008 * 109.51856 * 62.25071 * 20 19 18 40 40 H 1.08996 * 109.52960 * 182.37882 * 20 19 18 41 41 H 0.97000 * 119.99840 * 359.97438 * 24 23 21 42 42 H 0.97000 * 120.00139 * 179.97438 * 24 23 21 43 43 H 1.09004 * 109.45914 * 305.85939 * 26 17 16 44 44 H 1.09002 * 109.46093 * 65.82165 * 26 17 16 45 45 H 1.09004 * 109.46865 * 270.02389 * 28 27 16 46 46 H 1.08999 * 109.47194 * 30.02352 * 28 27 16 47 47 H 1.08991 * 109.47086 * 150.02571 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.0195 0.6701 5.3095 11 1 1.9943 -0.1367 6.4621 12 1 2.0917 1.9238 5.1865 13 6 2.0324 -0.7104 -1.2304 14 7 1.7997 -1.9506 -1.5552 15 7 2.3763 -2.2301 -2.6693 16 6 3.0209 -1.1772 -3.1140 17 7 3.7642 -1.0985 -4.2810 18 6 5.1392 -0.6656 -4.0009 19 6 5.9675 -0.7299 -5.2861 20 6 5.3321 0.1776 -6.3430 21 6 3.8856 -0.2643 -6.5809 22 1 3.8753 -1.2830 -6.9688 23 6 3.2345 0.6600 -7.5775 24 7 3.7458 0.7808 -8.8186 25 8 2.2504 1.2950 -7.2625 26 6 3.1176 -0.2135 -5.2582 27 7 2.8217 -0.1747 -2.2100 28 6 3.3455 1.1919 -2.2752 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.9235 -1.8416 4.7319 35 1 5.1286 0.3580 -3.6265 36 1 5.5810 -1.3218 -3.2509 37 1 6.9839 -0.3937 -5.0813 38 1 5.9901 -1.7559 -5.6536 39 1 5.3447 1.2096 -5.9921 40 1 5.8947 0.1025 -7.2736 41 1 4.5331 0.2732 -9.0703 42 1 3.3266 1.3754 -9.4601 43 1 2.0909 -0.5413 -5.4214 44 1 3.1164 0.8081 -4.8780 45 1 4.3144 1.2338 -1.7775 46 1 3.4595 1.4880 -3.3179 47 1 2.6523 1.8707 -1.7784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772352330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:12 Heat of formation + Delta-G solvation = 7.218450 kcal Electronic energy + Delta-G solvation = -27878.036239 eV Core-core repulsion = 24095.558985 eV Total energy + Delta-G solvation = -3782.477254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.11116 -41.27504 -39.44300 -37.15492 -36.02945 -35.07647 -34.39330 -33.75678 -32.18882 -30.17804 -28.92732 -28.66687 -26.02409 -25.57074 -25.30709 -23.79741 -22.55742 -21.78153 -20.87162 -20.57963 -18.77445 -18.62924 -18.11100 -17.65834 -17.29183 -17.08658 -16.51575 -16.23551 -15.94937 -15.89114 -15.36928 -15.04209 -14.88838 -14.71208 -14.52775 -14.22493 -14.12270 -13.83496 -13.72189 -13.60378 -13.01379 -12.83172 -12.71196 -12.63488 -12.47047 -12.30060 -12.09950 -12.01987 -11.82607 -11.69243 -11.53946 -11.39734 -11.17394 -11.13752 -10.93504 -10.65922 -10.54369 -10.09173 -9.89404 -8.16367 -6.28426 0.66450 1.30715 1.43696 1.47167 1.54496 1.58567 1.78413 2.10708 2.43723 2.71839 3.17433 3.41585 3.42435 3.50177 3.67617 3.79868 3.86810 4.00837 4.05421 4.09043 4.16468 4.24914 4.39085 4.40741 4.46417 4.50778 4.55859 4.64945 4.68563 4.78669 4.80313 4.92490 5.05792 5.07045 5.11360 5.14347 5.29942 5.35748 5.43757 5.45020 5.61601 5.67836 5.82852 5.89458 6.13658 6.20188 6.44695 6.86928 7.33301 7.40741 7.75621 8.95967 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.002722 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.824355 B =10283.524640 C =10536.339547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.007 3.993 3 H 0.096 0.904 4 C 0.052 3.948 5 C -0.529 4.529 6 H 0.076 0.924 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.262 1.262 13 C 0.207 3.793 14 N -0.330 5.330 15 N -0.313 5.313 16 C 0.336 3.664 17 N -0.438 5.438 18 C 0.039 3.961 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.097 4.097 22 H 0.127 0.873 23 C 0.525 3.475 24 N -0.830 5.830 25 O -0.596 6.596 26 C 0.077 3.923 27 N -0.499 5.499 28 C 0.058 3.942 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.059 0.941 32 H -0.010 1.010 33 H -0.020 1.020 34 H 0.262 0.738 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.420 0.580 42 H 0.409 0.591 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.356 9.628 -27.331 30.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.014 4.014 3 H 0.115 0.885 4 C 0.014 3.986 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.216 1.216 12 H -0.186 1.186 13 C -0.062 4.062 14 N -0.169 5.169 15 N -0.154 5.154 16 C -0.020 4.020 17 N -0.163 5.163 18 C -0.087 4.087 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.118 4.118 22 H 0.144 0.856 23 C 0.310 3.690 24 N -0.394 5.394 25 O -0.476 6.476 26 C -0.050 4.050 27 N -0.195 5.195 28 C -0.084 4.084 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.008 0.992 33 H -0.002 1.002 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.252 0.748 42 H 0.240 0.760 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.123 0.877 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.358 7.953 -27.042 29.700 hybrid contribution 0.273 1.679 1.103 2.027 sum 9.632 9.632 -25.939 29.298 Atomic orbital electron populations 1.21594 0.92412 1.01685 1.01987 1.19789 0.97216 0.97883 0.86507 0.88549 1.18833 0.93692 0.94852 0.91266 1.21533 1.35101 1.08948 0.91145 0.90548 1.26022 0.95043 0.95985 1.02932 1.70152 1.40024 1.23069 1.24446 0.85467 0.79042 0.78729 0.77607 1.19005 1.21560 1.18609 1.25372 0.94919 0.91973 0.93985 1.74094 1.22026 1.12715 1.08096 1.74316 1.12044 1.22881 1.06166 1.23136 1.01328 0.85868 0.91671 1.59055 1.02101 1.52134 1.03051 1.22611 0.85332 0.99777 1.01017 1.21598 0.98797 1.01876 0.91897 1.21672 0.91323 0.99741 1.01669 1.21285 0.96994 1.01452 0.92102 0.85554 1.20616 0.82894 0.81495 0.84030 1.43646 1.34146 1.48688 1.12882 1.90773 1.28575 1.48669 1.79614 1.21950 0.97690 0.94101 0.91279 1.47428 1.39246 1.13824 1.19035 1.22620 1.01981 0.78215 1.05543 0.94075 0.90511 0.92167 0.99194 1.00199 0.92939 0.92615 0.91358 0.87609 0.89790 0.91117 0.86806 0.74765 0.75973 0.92214 0.93233 0.88538 0.87657 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 8.99 71.98 0.65 -3.97 16 2 C 0.01 0.30 2.70 -11.54 -0.03 0.27 16 3 H 0.10 3.54 6.94 -2.39 -0.02 3.52 16 4 C 0.05 2.81 4.43 29.85 0.13 2.94 16 5 C -0.53 -29.17 8.41 25.60 0.22 -28.96 16 6 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -58.28 13.29 21.44 0.28 -57.99 16 9 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 C 0.21 8.71 6.58 137.64 0.91 9.62 16 14 N -0.33 -15.92 12.18 -49.54 -0.60 -16.52 16 15 N -0.31 -13.94 12.23 -58.00 -0.71 -14.65 16 16 C 0.34 11.81 6.65 260.11 1.73 13.54 16 17 N -0.44 -11.10 4.70 -706.16 -3.32 -14.42 16 18 C 0.04 0.71 5.13 86.33 0.44 1.16 16 19 C -0.10 -0.92 6.09 30.64 0.19 -0.73 16 20 C -0.11 -0.65 5.16 30.67 0.16 -0.49 16 21 C -0.10 -1.21 2.69 -11.49 -0.03 -1.24 16 22 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 23 C 0.53 7.73 7.43 87.66 0.65 8.38 16 24 N -0.83 -4.24 8.78 -173.53 -1.52 -5.76 16 25 O -0.60 -15.41 16.82 -3.03 -0.05 -15.46 16 26 C 0.08 1.69 3.83 86.33 0.33 2.02 16 27 N -0.50 -16.75 3.21 -538.19 -1.73 -18.48 16 28 C 0.06 1.28 9.20 127.77 1.18 2.45 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.93 6.95 -2.39 -0.02 2.91 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 34 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 35 H 0.06 0.89 5.66 -2.39 -0.01 0.88 16 36 H 0.07 1.52 8.10 -2.38 -0.02 1.50 16 37 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.07 0.47 8.14 -2.38 -0.02 0.46 16 40 H 0.11 -0.09 7.65 -2.39 -0.02 -0.11 16 41 H 0.42 -0.88 8.30 -92.71 -0.77 -1.64 16 42 H 0.41 1.71 8.93 -92.71 -0.83 0.88 16 43 H 0.06 1.68 8.08 -2.38 -0.02 1.67 16 44 H 0.05 1.08 5.68 -2.39 -0.01 1.07 16 45 H 0.10 1.87 7.96 -2.38 -0.02 1.86 16 46 H 0.11 1.83 4.97 -2.39 -0.01 1.82 16 47 H 0.11 2.15 7.23 -2.39 -0.02 2.13 16 Total: -1.00 -86.82 371.73 0.77 -86.06 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -0.59 Total: 6.20 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 6.97 Total: 5.31 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -7.60 Total: -127.82 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.05 Total: -15.46 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -86.82 0.77 -86.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772352330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.276 kcal (2) G-P(sol) polarization free energy of solvation -86.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds