Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47116 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.46585 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46730 * 299.99515 * 9 7 5 13 13 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 14 14 N 1.30300 * 126.35131 * 300.02994 * 13 2 1 15 15 N 1.28525 * 110.05261 * 179.97438 * 14 13 2 16 16 C 1.31216 * 109.86429 * 0.02562 * 15 14 13 17 17 N 1.38576 * 126.47392 * 179.97438 * 16 15 14 18 18 C 1.46844 * 111.00328 * 235.81288 * 17 16 15 19 19 C 1.53039 * 109.52418 * 185.83926 * 18 17 16 20 20 C 1.53115 * 109.27810 * 300.82112 * 19 18 17 21 21 C 1.53120 * 109.16079 * 57.65877 * 20 19 18 22 22 H 1.08998 * 109.53598 * 62.30047 * 21 20 19 23 23 C 1.50697 * 109.50121 * 182.40599 * 21 20 19 24 24 N 1.34780 * 119.99667 * 299.79623 * 23 21 20 25 25 O 1.21276 * 120.00442 * 119.80326 * 23 21 20 26 26 C 1.46853 * 111.00015 * 0.02707 * 17 16 15 27 27 N 1.36457 * 107.05042 * 359.75495 * 16 15 14 28 28 C 1.46504 * 127.13314 * 180.24422 * 27 16 15 29 29 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 30 30 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 31 31 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 33 33 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 34 34 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46397 * 305.85610 * 18 17 16 36 36 H 1.09004 * 109.45889 * 65.82533 * 18 17 16 37 37 H 1.09003 * 109.50087 * 180.87575 * 19 18 17 38 38 H 1.09001 * 109.49864 * 60.76515 * 19 18 17 39 39 H 1.09002 * 109.52449 * 297.74841 * 20 19 18 40 40 H 1.09000 * 109.57193 * 177.59021 * 20 19 18 41 41 H 0.96996 * 120.00399 * 0.02562 * 24 23 21 42 42 H 0.97002 * 120.00027 * 180.02562 * 24 23 21 43 43 H 1.08997 * 109.45782 * 294.17165 * 26 17 16 44 44 H 1.09000 * 109.46178 * 54.14036 * 26 17 16 45 45 H 1.09008 * 109.46993 * 270.15958 * 28 27 16 46 46 H 1.08994 * 109.47366 * 30.16244 * 28 27 16 47 47 H 1.08998 * 109.47027 * 150.16523 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4983 0.5628 5.2496 10 1 0.0183 0.6684 5.3091 11 1 1.9934 -0.1372 6.4621 12 1 2.0896 1.9236 5.1870 13 6 2.0324 -0.7105 -1.2304 14 7 1.7947 -1.9490 -1.5582 15 7 2.3756 -2.2300 -2.6697 16 6 3.0209 -1.1774 -3.1141 17 7 3.7639 -1.0987 -4.2811 18 6 5.1374 -0.6606 -4.0020 19 6 5.8836 -0.4452 -5.3207 20 6 5.8969 -1.7549 -6.1137 21 6 4.4554 -2.2145 -6.3493 22 1 3.9287 -1.4705 -6.9470 23 6 4.4606 -3.5335 -7.0781 24 7 5.0317 -3.6287 -8.2952 25 8 3.9508 -4.5094 -6.5695 26 6 3.7507 -2.3787 -5.0008 27 7 2.8179 -0.1735 -2.2124 28 6 3.3363 1.1950 -2.2809 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 2.9241 -1.8413 4.7318 35 1 5.1138 0.2738 -3.4413 36 1 5.6496 -1.4233 -3.4153 37 1 6.9077 -0.1351 -5.1129 38 1 5.3797 0.3271 -5.9019 39 1 6.4346 -2.5170 -5.5496 40 1 6.3898 -1.5961 -7.0728 41 1 5.4396 -2.8483 -8.7019 42 1 5.0347 -4.4776 -8.7645 43 1 4.2694 -3.1331 -4.4094 44 1 2.7197 -2.6920 -5.1655 45 1 4.3062 1.2413 -1.7856 46 1 3.4467 1.4900 -3.3244 47 1 2.6417 1.8720 -1.7835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772352331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = 32.586203 kcal Electronic energy + Delta-G solvation = -27680.625381 eV Core-core repulsion = 23899.248156 eV Total energy + Delta-G solvation = -3781.377226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.60775 -40.41907 -38.46272 -35.39362 -34.80966 -34.20255 -33.32453 -32.08993 -31.38124 -28.50475 -27.45615 -26.90369 -24.89170 -24.66831 -23.93548 -21.87170 -21.64731 -20.62906 -19.98316 -19.00197 -17.99674 -17.11198 -16.78537 -16.45191 -16.07047 -15.82673 -15.36529 -15.15582 -14.69286 -14.46453 -14.30093 -14.02883 -13.80588 -13.35868 -13.21170 -13.14079 -12.98846 -12.73985 -12.34928 -11.88793 -11.75522 -11.42187 -11.27733 -11.13992 -11.02593 -10.94008 -10.90706 -10.72299 -10.48399 -10.20699 -10.12530 -10.05351 -10.01223 -9.79913 -9.58109 -9.30675 -9.10288 -8.34922 -7.88844 -5.98615 -4.02466 2.12989 2.33359 2.46912 3.13869 3.33105 3.34047 3.38646 3.40188 3.75362 4.18674 4.32513 4.42838 4.44947 4.60466 4.76413 4.76706 4.96677 5.04014 5.07685 5.12644 5.13448 5.29503 5.33244 5.36622 5.40257 5.49626 5.51016 5.64388 5.67134 5.81681 5.91192 6.08044 6.13409 6.23539 6.31752 6.42736 6.64923 6.73356 6.84117 6.93307 6.95867 7.08643 7.43250 7.64137 7.81215 7.94396 8.01007 8.36606 9.03069 9.29351 9.60883 11.12396 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.002629 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.009993 B =10647.588744 C =10864.538334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.001 4.001 3 H 0.071 0.929 4 C 0.039 3.961 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.213 3.787 14 N -0.282 5.282 15 N -0.317 5.317 16 C 0.332 3.668 17 N -0.448 5.448 18 C 0.043 3.957 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.107 4.107 22 H 0.109 0.891 23 C 0.523 3.477 24 N -0.857 5.857 25 O -0.531 6.531 26 C 0.093 3.907 27 N -0.487 5.487 28 C 0.077 3.923 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.013 0.987 34 H 0.262 0.738 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.400 0.600 42 H 0.401 0.599 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 6.252 -25.416 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.022 4.022 3 H 0.090 0.910 4 C 0.001 3.999 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.054 4.054 14 N -0.120 5.120 15 N -0.162 5.162 16 C -0.024 4.024 17 N -0.172 5.172 18 C -0.085 4.085 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.129 4.129 22 H 0.127 0.873 23 C 0.307 3.693 24 N -0.421 5.421 25 O -0.406 6.406 26 C -0.035 4.035 27 N -0.183 5.183 28 C -0.067 4.067 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.229 0.771 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.063 4.540 -25.046 26.700 hybrid contribution 0.990 1.399 0.734 1.864 sum 9.053 5.939 -24.312 26.614 Atomic orbital electron populations 1.21682 0.93603 1.02572 1.00560 1.19976 0.96233 0.97500 0.88475 0.91029 1.19099 0.96089 0.96319 0.88415 1.21105 1.35570 1.08496 0.90738 0.92386 1.25009 0.95179 0.95025 0.99078 1.69974 1.38354 1.20932 1.23664 0.86662 0.78986 0.79925 0.82437 1.20134 1.21339 1.20332 1.25589 0.94760 0.92019 0.93027 1.74024 1.20230 1.11177 1.06533 1.74612 1.14136 1.20355 1.07068 1.22366 1.03123 0.86330 0.90626 1.58543 1.12015 1.31593 1.15030 1.22437 0.86468 1.01426 0.98126 1.21573 1.00477 0.97549 0.95329 1.21627 0.94256 0.98176 1.01164 1.21360 0.98545 0.95403 0.97569 0.87288 1.20475 0.77081 0.90421 0.81332 1.43854 1.61957 1.16016 1.20240 1.90819 1.44281 1.38948 1.66588 1.21711 1.03182 0.87131 0.91456 1.46116 1.41401 1.11637 1.19150 1.22055 1.00704 0.79985 1.03935 0.90701 0.94967 0.92017 0.94934 0.96890 0.92866 0.89801 0.93185 0.90181 0.90381 0.91096 0.90804 0.77139 0.76776 0.91981 0.88335 0.90478 0.89345 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.99 37.16 0.33 -2.10 16 2 C 0.00 -0.02 2.70 -91.77 -0.25 -0.26 16 3 H 0.07 1.34 6.94 -51.93 -0.36 0.97 16 4 C 0.04 1.01 4.43 -27.88 -0.12 0.89 16 5 C -0.52 -14.20 8.41 -34.44 -0.29 -14.49 16 6 H 0.06 1.49 7.05 -52.49 -0.37 1.12 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.21 4.36 6.58 -154.01 -1.01 3.35 16 14 N -0.28 -6.50 12.18 32.99 0.40 -6.09 16 15 N -0.32 -6.74 11.24 30.31 0.34 -6.40 16 16 C 0.33 5.71 7.21 -318.88 -2.30 3.41 16 17 N -0.45 -5.74 4.70 -174.55 -0.82 -6.56 16 18 C 0.04 0.42 5.28 -3.83 -0.02 0.40 16 19 C -0.11 -0.67 6.09 -26.65 -0.16 -0.83 16 20 C -0.11 -0.68 5.16 -26.61 -0.14 -0.82 16 21 C -0.11 -0.88 2.69 -91.69 -0.25 -1.13 16 22 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 23 C 0.52 4.99 7.43 -10.99 -0.08 4.91 16 24 N -0.86 -4.26 8.78 31.22 0.27 -3.98 16 25 O -0.53 -7.91 16.82 5.56 0.09 -7.81 16 26 C 0.09 1.19 3.46 -3.83 -0.01 1.18 16 27 N -0.49 -8.11 3.21 -121.46 -0.39 -8.50 16 28 C 0.08 0.86 9.15 59.85 0.55 1.40 16 29 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.08 0.76 5.24 -51.93 -0.27 0.49 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.23 7.65 -51.93 -0.40 -0.17 16 41 H 0.40 0.69 8.31 -40.82 -0.34 0.35 16 42 H 0.40 1.75 8.93 -40.82 -0.36 1.38 16 43 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 44 H 0.10 1.50 7.89 -51.93 -0.41 1.09 16 45 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16 46 H 0.09 0.76 7.67 -51.93 -0.40 0.37 16 47 H 0.09 0.97 7.23 -51.93 -0.38 0.59 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -37.47 375.38 -9.99 -47.46 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.41 Total: -1.36 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.85 Total: -2.51 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.54 Total: -57.71 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.47 -9.99 -47.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772352331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.047 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds