Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47116 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.46585 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46730 * 299.99515 * 9 7 5 13 13 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 14 14 N 1.30300 * 126.35131 * 300.02994 * 13 2 1 15 15 N 1.28525 * 110.05261 * 179.97438 * 14 13 2 16 16 C 1.31216 * 109.86429 * 0.02562 * 15 14 13 17 17 N 1.38576 * 126.47392 * 179.97438 * 16 15 14 18 18 C 1.46844 * 111.00328 * 235.81288 * 17 16 15 19 19 C 1.53039 * 109.52418 * 185.83926 * 18 17 16 20 20 C 1.53115 * 109.27810 * 300.82112 * 19 18 17 21 21 C 1.53120 * 109.16079 * 57.65877 * 20 19 18 22 22 H 1.08998 * 109.53598 * 62.30047 * 21 20 19 23 23 C 1.50697 * 109.50121 * 182.40599 * 21 20 19 24 24 N 1.34780 * 119.99667 * 299.79623 * 23 21 20 25 25 O 1.21276 * 120.00442 * 119.80326 * 23 21 20 26 26 C 1.46853 * 111.00015 * 0.02707 * 17 16 15 27 27 N 1.36457 * 107.05042 * 359.75495 * 16 15 14 28 28 C 1.46504 * 127.13314 * 180.24422 * 27 16 15 29 29 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 30 30 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 31 31 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 33 33 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 34 34 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.46397 * 305.85610 * 18 17 16 36 36 H 1.09004 * 109.45889 * 65.82533 * 18 17 16 37 37 H 1.09003 * 109.50087 * 180.87575 * 19 18 17 38 38 H 1.09001 * 109.49864 * 60.76515 * 19 18 17 39 39 H 1.09002 * 109.52449 * 297.74841 * 20 19 18 40 40 H 1.09000 * 109.57193 * 177.59021 * 20 19 18 41 41 H 0.96996 * 120.00399 * 0.02562 * 24 23 21 42 42 H 0.97002 * 120.00027 * 180.02562 * 24 23 21 43 43 H 1.08997 * 109.45782 * 294.17165 * 26 17 16 44 44 H 1.09000 * 109.46178 * 54.14036 * 26 17 16 45 45 H 1.09008 * 109.46993 * 270.15958 * 28 27 16 46 46 H 1.08994 * 109.47366 * 30.16244 * 28 27 16 47 47 H 1.08998 * 109.47027 * 150.16523 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4983 0.5628 5.2496 10 1 0.0183 0.6684 5.3091 11 1 1.9934 -0.1372 6.4621 12 1 2.0896 1.9236 5.1870 13 6 2.0324 -0.7105 -1.2304 14 7 1.7947 -1.9490 -1.5582 15 7 2.3756 -2.2300 -2.6697 16 6 3.0209 -1.1774 -3.1141 17 7 3.7639 -1.0987 -4.2811 18 6 5.1374 -0.6606 -4.0020 19 6 5.8836 -0.4452 -5.3207 20 6 5.8969 -1.7549 -6.1137 21 6 4.4554 -2.2145 -6.3493 22 1 3.9287 -1.4705 -6.9470 23 6 4.4606 -3.5335 -7.0781 24 7 5.0317 -3.6287 -8.2952 25 8 3.9508 -4.5094 -6.5695 26 6 3.7507 -2.3787 -5.0008 27 7 2.8179 -0.1735 -2.2124 28 6 3.3363 1.1950 -2.2809 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2057 34 1 2.9241 -1.8413 4.7318 35 1 5.1138 0.2738 -3.4413 36 1 5.6496 -1.4233 -3.4153 37 1 6.9077 -0.1351 -5.1129 38 1 5.3797 0.3271 -5.9019 39 1 6.4346 -2.5170 -5.5496 40 1 6.3898 -1.5961 -7.0728 41 1 5.4396 -2.8483 -8.7019 42 1 5.0347 -4.4776 -8.7645 43 1 4.2694 -3.1331 -4.4094 44 1 2.7197 -2.6920 -5.1655 45 1 4.3062 1.2413 -1.7856 46 1 3.4467 1.4900 -3.3244 47 1 2.6417 1.8720 -1.7835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772352331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = 5.009970 kcal Electronic energy + Delta-G solvation = -27681.821177 eV Core-core repulsion = 23899.248156 eV Total energy + Delta-G solvation = -3782.573021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.04643 -41.24265 -39.39404 -37.11972 -36.02133 -35.18337 -34.39202 -33.82422 -32.15893 -30.04386 -28.84509 -28.51103 -26.03789 -25.66642 -25.42685 -23.58014 -22.55128 -21.68754 -20.89738 -20.41236 -18.83097 -18.60656 -17.87695 -17.65996 -17.42101 -17.03818 -16.50946 -16.19336 -16.10118 -15.61138 -15.40991 -15.01786 -14.94317 -14.64567 -14.44120 -14.23095 -14.09715 -13.84039 -13.69861 -13.46918 -12.96913 -12.82320 -12.73075 -12.59273 -12.41165 -12.28294 -12.07810 -11.98976 -11.86091 -11.66987 -11.57905 -11.31983 -11.21792 -11.09163 -10.91237 -10.75617 -10.64742 -10.53211 -9.32308 -8.15759 -6.28054 0.75522 1.20962 1.44004 1.47994 1.55205 1.59982 1.81695 2.35855 2.44613 2.79452 3.18053 3.44493 3.46791 3.63122 3.74411 3.83703 3.87512 4.00411 4.11965 4.19350 4.27950 4.28798 4.40526 4.43211 4.47451 4.56236 4.59438 4.63359 4.75413 4.82838 4.88188 4.96107 5.05929 5.09529 5.11682 5.17409 5.32228 5.36992 5.45180 5.50032 5.61110 5.70042 5.83667 5.90280 6.14174 6.20953 6.46555 6.87936 7.35779 7.41310 7.78757 8.96675 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.024905 B = 0.002629 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.009993 B =10647.588744 C =10864.538334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.011 3.989 3 H 0.101 0.899 4 C 0.050 3.950 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.292 1.292 12 H -0.259 1.259 13 C 0.200 3.800 14 N -0.331 5.331 15 N -0.370 5.370 16 C 0.347 3.653 17 N -0.430 5.430 18 C 0.034 3.966 19 C -0.101 4.101 20 C -0.111 4.111 21 C -0.094 4.094 22 H 0.138 0.862 23 C 0.520 3.480 24 N -0.829 5.829 25 O -0.598 6.598 26 C 0.096 3.904 27 N -0.481 5.481 28 C 0.063 3.937 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.036 0.964 32 H -0.014 1.014 33 H -0.022 1.022 34 H 0.261 0.739 35 H 0.098 0.902 36 H 0.026 0.974 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.421 0.579 42 H 0.408 0.592 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.464 10.545 -27.784 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.010 4.010 3 H 0.119 0.881 4 C 0.012 3.988 5 C -0.565 4.565 6 H 0.097 0.903 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.184 1.184 13 C -0.070 4.070 14 N -0.169 5.169 15 N -0.214 5.214 16 C -0.010 4.010 17 N -0.154 5.154 18 C -0.092 4.092 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.116 4.116 22 H 0.156 0.844 23 C 0.305 3.695 24 N -0.393 5.393 25 O -0.478 6.478 26 C -0.032 4.032 27 N -0.176 5.176 28 C -0.078 4.078 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.004 0.996 33 H -0.003 1.003 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.136 0.864 41 H 0.253 0.747 42 H 0.239 0.761 43 H 0.045 0.955 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.140 0.860 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.467 8.905 -27.489 30.407 hybrid contribution 0.654 0.039 1.338 1.490 sum 10.121 8.944 -26.151 29.433 Atomic orbital electron populations 1.21599 0.92476 1.01478 1.02108 1.19754 0.97112 0.97983 0.86139 0.88079 1.18845 0.93613 0.94759 0.91559 1.21552 1.34980 1.08952 0.91049 0.90276 1.26062 0.95070 0.95985 1.03067 1.70161 1.40172 1.23202 1.24419 0.85444 0.79051 0.78762 0.77449 1.18959 1.21748 1.18380 1.25368 0.95950 0.91747 0.93887 1.73896 1.21997 1.13124 1.07850 1.74493 1.16515 1.22818 1.07551 1.22858 1.01607 0.85540 0.91020 1.58802 1.13382 1.30842 1.12404 1.22736 0.84457 1.01005 1.01018 1.21624 1.01426 0.97958 0.92830 1.21705 0.92196 0.97703 1.03295 1.21322 1.00145 0.95492 0.94642 0.84434 1.20738 0.76534 0.90009 0.82248 1.43617 1.59948 1.17283 1.18461 1.90805 1.47499 1.41062 1.68434 1.21595 1.01488 0.86378 0.93742 1.46267 1.40328 1.13306 1.17666 1.22563 1.01515 0.77067 1.06644 0.90513 0.91826 0.94499 0.99603 1.00341 0.93008 0.88389 0.95565 0.87539 0.88027 0.92756 0.86360 0.74661 0.76069 0.95534 0.91691 0.89061 0.86035 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 8.99 71.98 0.65 -3.92 16 2 C 0.01 0.46 2.70 -11.54 -0.03 0.43 16 3 H 0.10 3.59 6.94 -2.39 -0.02 3.58 16 4 C 0.05 2.75 4.43 29.85 0.13 2.88 16 5 C -0.53 -29.04 8.41 25.60 0.22 -28.82 16 6 H 0.08 3.94 7.05 -2.91 -0.02 3.92 16 7 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 8 N -0.94 -58.97 13.29 21.45 0.28 -58.68 16 9 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 C 0.20 8.44 6.58 137.64 0.91 9.34 16 14 N -0.33 -16.34 12.18 -49.54 -0.60 -16.95 16 15 N -0.37 -16.87 11.24 -58.01 -0.65 -17.53 16 16 C 0.35 12.28 7.21 260.11 1.88 14.15 16 17 N -0.43 -10.78 4.70 -706.14 -3.32 -14.10 16 18 C 0.03 0.61 5.28 86.33 0.46 1.06 16 19 C -0.10 -0.76 6.09 30.65 0.19 -0.58 16 20 C -0.11 -0.92 5.16 30.67 0.16 -0.77 16 21 C -0.09 -1.40 2.69 -11.49 -0.03 -1.43 16 22 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 23 C 0.52 9.59 7.43 87.66 0.65 10.24 16 24 N -0.83 -6.19 8.78 -173.53 -1.52 -7.71 16 25 O -0.60 -18.88 16.82 -3.02 -0.05 -18.93 16 26 C 0.10 2.59 3.46 86.33 0.30 2.89 16 27 N -0.48 -15.81 3.21 -538.17 -1.73 -17.54 16 28 C 0.06 1.21 9.15 127.77 1.17 2.38 16 29 H 0.08 2.89 6.95 -2.39 -0.02 2.87 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 33 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 34 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.10 1.47 5.24 -2.39 -0.01 1.46 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 0.03 7.65 -2.39 -0.02 0.01 16 41 H 0.42 -0.34 8.31 -92.71 -0.77 -1.11 16 42 H 0.41 2.75 8.93 -92.71 -0.83 1.92 16 43 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 44 H 0.06 2.17 7.89 -2.39 -0.02 2.15 16 45 H 0.09 1.56 7.74 -2.38 -0.02 1.54 16 46 H 0.12 1.56 7.67 -2.39 -0.02 1.54 16 47 H 0.11 1.83 7.23 -2.39 -0.02 1.82 16 Total: -1.00 -92.08 375.38 0.93 -91.15 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -0.60 Total: 6.50 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 7.09 Total: 8.08 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -7.54 Total: -132.51 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -92.08 0.93 -91.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772352331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.158 kcal (2) G-P(sol) polarization free energy of solvation -92.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds