Wall clock time and date at job start Fri Apr 10 2020 18:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46610 * 2 1 4 4 C 1.34902 * 116.99591 * 179.97438 * 3 2 1 5 5 O 1.21638 * 120.00065 * 359.97438 * 4 3 2 6 6 C 1.46439 * 120.00328 * 180.02562 * 4 3 2 7 7 S 1.75553 * 124.74619 * 0.13094 * 6 4 3 8 8 C 1.75943 * 91.56536 * 180.22462 * 7 6 4 9 9 N 1.34746 * 131.03672 * 179.78981 * 8 7 6 10 10 C 1.29903 * 122.29973 * 180.02562 * 9 8 7 11 11 N 1.35585 * 122.61251 * 0.02562 * 10 9 8 12 12 C 1.46506 * 119.79514 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46896 * 270.02128 * 12 11 10 14 14 H 1.08000 * 119.99994 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00235 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99497 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00179 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46936 * 60.00337 * 17 15 13 19 19 H 1.48508 * 109.47127 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47467 * 300.00044 * 17 15 13 21 21 C 1.34875 * 120.40619 * 359.97438 * 11 10 9 22 22 O 1.21815 * 120.96840 * 179.97438 * 21 11 10 23 23 C 1.39884 * 109.44205 * 359.81173 * 8 7 6 24 24 C 1.34269 * 124.75522 * 180.02562 * 6 4 3 25 25 C 1.50706 * 122.24855 * 359.97385 * 24 6 4 26 26 H 1.09004 * 109.47663 * 299.99689 * 1 2 3 27 27 H 1.08997 * 109.47418 * 59.99864 * 1 2 3 28 28 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47111 * 240.00050 * 2 1 3 30 30 H 1.09000 * 109.46566 * 119.99845 * 2 1 3 31 31 H 1.07996 * 118.69620 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.47033 * 30.01664 * 12 11 10 33 33 H 1.08994 * 109.47113 * 150.02265 * 12 11 10 34 34 H 0.96999 * 119.99806 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.47015 * 269.71521 * 25 24 6 36 36 H 1.09000 * 109.46646 * 29.70673 * 25 24 6 37 37 H 1.09000 * 109.47248 * 149.71391 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0923 0.5811 0.0015 6 6 3.9110 2.8989 0.0011 7 16 2.9606 4.3749 0.0045 8 6 4.4132 5.3675 -0.0038 9 7 4.5702 6.7058 -0.0095 10 6 5.7416 7.2673 -0.0158 11 7 6.8942 6.5533 -0.0174 12 6 8.1826 7.2507 -0.0251 13 6 8.6186 7.4847 -1.4485 14 1 7.9983 7.1473 -2.2657 15 6 9.8099 8.1286 -1.7077 16 7 10.5655 8.5389 -0.7126 17 14 10.3506 8.4180 -3.4720 18 1 9.3356 9.2464 -4.1713 19 1 11.6566 9.1250 -3.4799 20 1 10.4893 7.1134 -4.1676 21 6 6.8619 5.2049 -0.0120 22 8 7.8911 4.5533 -0.0139 23 6 5.5419 4.5412 -0.0043 24 6 5.2230 3.1846 0.0012 25 6 6.2799 2.1102 0.0012 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.7997 8.3457 -0.0206 32 1 8.0805 8.2082 0.4857 33 1 8.9278 6.6428 0.4879 34 1 11.4034 8.9923 -0.8949 35 1 6.5383 1.8548 1.0289 36 1 5.8983 1.2253 -0.5081 37 1 7.1673 2.4735 -0.5170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014197081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:17 Heat of formation + Delta-G solvation = -71.467012 kcal Electronic energy + Delta-G solvation = -24149.835073 eV Core-core repulsion = 20405.021030 eV Total energy + Delta-G solvation = -3744.814043 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16639 -40.41229 -37.64917 -37.17830 -36.32525 -34.25550 -32.66069 -32.01756 -29.96338 -28.55605 -27.96300 -25.17121 -24.59646 -23.38655 -22.41505 -21.87509 -19.66659 -18.99826 -17.68765 -17.42649 -17.02715 -16.72304 -16.25788 -16.12954 -15.38901 -15.27349 -14.49971 -14.39805 -14.09283 -13.65886 -13.48776 -13.38746 -13.01887 -12.92375 -12.84637 -12.54708 -12.27885 -12.13092 -11.88019 -11.85076 -11.63895 -11.17528 -11.01582 -10.90564 -10.73729 -10.48747 -10.43037 -10.22469 -9.74597 -9.51283 -9.25256 -8.73960 -8.53525 -7.74904 -6.37482 -4.46292 0.10285 1.12867 1.58294 1.79537 2.15677 2.44188 2.79000 3.06972 3.17403 3.22449 3.27032 3.85060 4.21090 4.30581 4.56083 4.66594 4.71299 4.79304 4.89727 4.99762 5.00432 5.27160 5.31315 5.49071 5.53686 5.62492 5.67997 5.85351 5.94570 6.11116 6.29608 6.49698 6.58259 6.73038 6.91893 7.17086 7.54776 7.64693 7.72050 7.96541 8.26636 8.56003 9.21443 10.70914 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.024985 B = 0.003090 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.421384 B = 9058.533629 C = 9494.146820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.357 6.357 4 C 0.550 3.450 5 O -0.499 6.499 6 C -0.299 4.299 7 S 0.235 5.765 8 C 0.117 3.883 9 N -0.543 5.543 10 C 0.425 3.575 11 N -0.509 5.509 12 C 0.222 3.778 13 C -0.546 4.546 14 H 0.063 0.937 15 C 0.071 3.929 16 N -0.886 5.886 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.558 3.442 22 O -0.496 6.496 23 C -0.266 4.266 24 C 0.077 3.923 25 C -0.121 4.121 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.212 0.788 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.270 0.730 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.689 -8.931 2.811 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.274 6.274 4 C 0.395 3.605 5 O -0.389 6.389 6 C -0.416 4.416 7 S 0.500 5.500 8 C -0.120 4.120 9 N -0.269 5.269 10 C 0.136 3.864 11 N -0.223 5.223 12 C 0.104 3.896 13 C -0.584 4.584 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.733 3.267 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.349 3.651 22 O -0.369 6.369 23 C -0.282 4.282 24 C 0.063 3.937 25 C -0.179 4.179 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.228 0.772 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.922 -8.996 2.876 21.148 hybrid contribution 2.526 -0.522 -0.960 2.753 sum -16.395 -9.517 1.916 19.054 Atomic orbital electron populations 1.21813 0.92534 1.02962 1.03669 1.23029 0.95309 0.79818 1.02775 1.86579 1.23492 1.32572 1.84795 1.19418 0.80497 0.87763 0.72828 1.90832 1.59783 1.41466 1.46859 1.22023 0.96496 0.95123 1.27956 1.83956 1.01862 0.91465 1.72750 1.24364 0.97464 0.94151 0.96043 1.67783 1.22937 1.08403 1.27795 1.25010 0.79556 0.99372 0.82458 1.47173 1.11558 1.07817 1.55774 1.20064 0.76851 0.92836 0.99886 1.21151 1.06751 1.39796 0.90730 0.91907 1.24896 0.95602 0.94645 0.98248 1.69894 1.13057 1.37957 1.31345 0.86407 0.78033 0.78701 0.83550 1.19829 1.20829 1.19897 1.17701 0.88208 0.81571 0.77592 1.90858 1.34808 1.63413 1.47858 1.20516 0.93875 0.93707 1.20116 1.18471 0.93115 0.93573 0.88518 1.21066 0.96815 0.96377 1.03663 0.91390 0.91372 0.90189 0.91077 0.91081 0.77203 0.92504 0.91802 0.92007 0.90160 0.88954 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.59 6.20 37.16 0.23 0.82 16 3 O -0.36 -4.41 10.04 -41.05 -0.41 -4.82 16 4 C 0.55 8.08 7.91 34.03 0.27 8.35 16 5 O -0.50 -8.04 13.71 -19.37 -0.27 -8.31 16 6 C -0.30 -4.62 6.32 -37.68 -0.24 -4.86 16 7 S 0.23 3.23 23.06 -107.50 -2.48 0.76 16 8 C 0.12 1.95 7.73 -15.66 -0.12 1.83 16 9 N -0.54 -8.79 10.36 -12.54 -0.13 -8.92 16 10 C 0.43 6.80 11.44 -90.37 -1.03 5.77 16 11 N -0.51 -10.09 2.57 -120.06 -0.31 -10.40 16 12 C 0.22 5.04 5.12 -5.19 -0.03 5.02 16 13 C -0.55 -13.92 9.38 -34.44 -0.32 -14.24 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -23.85 13.29 55.43 0.74 -23.12 16 17 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.56 11.88 7.68 -12.33 -0.09 11.78 16 22 O -0.50 -11.98 14.74 5.09 0.07 -11.90 16 23 C -0.27 -4.95 6.04 -104.97 -0.63 -5.59 16 24 C 0.08 1.33 5.85 -105.60 -0.62 0.72 16 25 C -0.12 -2.03 9.02 36.01 0.32 -1.71 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.21 2.53 8.00 -52.49 -0.42 2.11 16 32 H 0.06 1.21 8.00 -51.93 -0.42 0.80 16 33 H 0.06 1.64 7.45 -51.93 -0.39 1.26 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.50 5.73 -51.93 -0.30 1.20 16 37 H 0.09 1.60 6.50 -51.93 -0.34 1.26 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -30.28 337.70 -8.63 -38.91 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.94 Total: -1.62 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: -1.98 Total: 9.04 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.30 Total: -42.44 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.60 Total: -25.03 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.48 Total: 0.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.28 -8.63 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014197081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.556 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds