Wall clock time and date at job start Fri Apr 10 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.46610 * 2 1 4 4 C 1.34902 * 116.99591 * 179.97438 * 3 2 1 5 5 O 1.21638 * 120.00065 * 359.97438 * 4 3 2 6 6 C 1.46439 * 120.00328 * 180.02562 * 4 3 2 7 7 S 1.75553 * 124.74619 * 0.13094 * 6 4 3 8 8 C 1.75943 * 91.56536 * 180.22462 * 7 6 4 9 9 N 1.34746 * 131.03672 * 179.78981 * 8 7 6 10 10 C 1.29903 * 122.29973 * 180.02562 * 9 8 7 11 11 N 1.35585 * 122.61251 * 0.02562 * 10 9 8 12 12 C 1.46506 * 119.79514 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46896 * 270.02128 * 12 11 10 14 14 H 1.08000 * 119.99994 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00235 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99497 * 359.97438 * 15 13 12 17 17 Si 1.86790 * 120.00179 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46936 * 60.00337 * 17 15 13 19 19 H 1.48508 * 109.47127 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47467 * 300.00044 * 17 15 13 21 21 C 1.34875 * 120.40619 * 359.97438 * 11 10 9 22 22 O 1.21815 * 120.96840 * 179.97438 * 21 11 10 23 23 C 1.39884 * 109.44205 * 359.81173 * 8 7 6 24 24 C 1.34269 * 124.75522 * 180.02562 * 6 4 3 25 25 C 1.50706 * 122.24855 * 359.97385 * 24 6 4 26 26 H 1.09004 * 109.47663 * 299.99689 * 1 2 3 27 27 H 1.08997 * 109.47418 * 59.99864 * 1 2 3 28 28 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47111 * 240.00050 * 2 1 3 30 30 H 1.09000 * 109.46566 * 119.99845 * 2 1 3 31 31 H 1.07996 * 118.69620 * 179.97438 * 10 9 8 32 32 H 1.09001 * 109.47033 * 30.01664 * 12 11 10 33 33 H 1.08994 * 109.47113 * 150.02265 * 12 11 10 34 34 H 0.96999 * 119.99806 * 180.02562 * 16 15 13 35 35 H 1.08999 * 109.47015 * 269.71521 * 25 24 6 36 36 H 1.09000 * 109.46646 * 29.70673 * 25 24 6 37 37 H 1.09000 * 109.47248 * 149.71391 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3513 1.5458 0.0005 5 8 4.0923 0.5811 0.0015 6 6 3.9110 2.8989 0.0011 7 16 2.9606 4.3749 0.0045 8 6 4.4132 5.3675 -0.0038 9 7 4.5702 6.7058 -0.0095 10 6 5.7416 7.2673 -0.0158 11 7 6.8942 6.5533 -0.0174 12 6 8.1826 7.2507 -0.0251 13 6 8.6186 7.4847 -1.4485 14 1 7.9983 7.1473 -2.2657 15 6 9.8099 8.1286 -1.7077 16 7 10.5655 8.5389 -0.7126 17 14 10.3506 8.4180 -3.4720 18 1 9.3356 9.2464 -4.1713 19 1 11.6566 9.1250 -3.4799 20 1 10.4893 7.1134 -4.1676 21 6 6.8619 5.2049 -0.0120 22 8 7.8911 4.5533 -0.0139 23 6 5.5419 4.5412 -0.0043 24 6 5.2230 3.1846 0.0012 25 6 6.2799 2.1102 0.0012 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.7997 8.3457 -0.0206 32 1 8.0805 8.2082 0.4857 33 1 8.9278 6.6428 0.4879 34 1 11.4034 8.9923 -0.8949 35 1 6.5383 1.8548 1.0289 36 1 5.8983 1.2253 -0.5081 37 1 7.1673 2.4735 -0.5170 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014197081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:16 Heat of formation + Delta-G solvation = -87.650231 kcal Electronic energy + Delta-G solvation = -24150.536830 eV Core-core repulsion = 20405.021030 eV Total energy + Delta-G solvation = -3745.515800 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61966 -41.54284 -38.95224 -38.69233 -37.51817 -35.86624 -34.47456 -32.72740 -31.31499 -30.05298 -29.54494 -26.49270 -26.21868 -24.40288 -24.01409 -22.94331 -20.96443 -20.25737 -18.95670 -18.90581 -18.84406 -17.74974 -17.69138 -17.36937 -16.96197 -16.66828 -16.16780 -15.51817 -15.45258 -14.95251 -14.71049 -14.62305 -14.39128 -14.31098 -14.13208 -13.74866 -13.70574 -13.42270 -13.29417 -12.95511 -12.79764 -12.69987 -12.55171 -12.35933 -12.23519 -11.93338 -11.69873 -11.55049 -11.17825 -11.06124 -10.89209 -10.71065 -9.82944 -9.10506 -8.34381 -6.49391 -1.19712 -0.11181 0.20237 0.52240 0.74297 1.33984 1.39320 1.41992 1.48814 1.57636 1.64303 2.30882 2.41725 2.96602 3.02678 3.36602 3.50654 3.63989 3.94930 4.03159 4.07645 4.15825 4.24180 4.36653 4.48540 4.58973 4.65014 4.74937 4.94936 4.95165 5.00534 5.12171 5.20109 5.26501 5.40265 5.54578 5.61200 5.79844 6.50353 6.52904 6.59009 6.72927 7.21632 8.73501 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.024985 B = 0.003090 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.421384 B = 9058.533629 C = 9494.146820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.552 3.448 5 O -0.516 6.516 6 C -0.299 4.299 7 S 0.330 5.670 8 C 0.096 3.904 9 N -0.530 5.530 10 C 0.426 3.574 11 N -0.517 5.517 12 C 0.238 3.762 13 C -0.557 4.557 14 H 0.054 0.946 15 C 0.026 3.974 16 N -0.914 5.914 17 Si 0.964 3.036 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.283 1.283 21 C 0.545 3.455 22 O -0.543 6.543 23 C -0.281 4.281 24 C 0.053 3.947 25 C -0.111 4.111 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.273 0.727 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.825 -8.667 2.276 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.271 6.271 4 C 0.397 3.603 5 O -0.407 6.407 6 C -0.417 4.417 7 S 0.596 5.404 8 C -0.141 4.141 9 N -0.255 5.255 10 C 0.138 3.862 11 N -0.232 5.232 12 C 0.118 3.882 13 C -0.595 4.595 14 H 0.072 0.928 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.788 3.212 18 H -0.182 1.182 19 H -0.201 1.201 20 H -0.209 1.209 21 C 0.339 3.661 22 O -0.421 6.421 23 C -0.298 4.298 24 C 0.039 3.961 25 C -0.170 4.170 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.267 0.733 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.153 -8.723 2.345 23.923 hybrid contribution 3.282 -0.733 -0.757 3.447 sum -18.870 -9.455 1.588 21.166 Atomic orbital electron populations 1.21848 0.90018 1.04592 1.03891 1.23417 0.97207 0.78164 1.03091 1.86570 1.21708 1.34742 1.84118 1.19318 0.81299 0.87119 0.72521 1.90824 1.60483 1.41928 1.47504 1.22300 0.96459 0.96914 1.25984 1.83655 0.98400 0.88384 1.69962 1.24820 0.98772 0.94405 0.96102 1.67915 1.22519 1.07986 1.27091 1.25829 0.78262 1.00727 0.81382 1.47016 1.11780 1.07499 1.56876 1.19634 0.77572 0.92704 0.98281 1.21388 1.06923 1.39415 0.91769 0.92757 1.25648 0.95679 0.94525 1.01765 1.69978 1.13464 1.38740 1.33042 0.85518 0.78191 0.78200 0.79287 1.18225 1.20148 1.20905 1.18220 0.88842 0.82051 0.77021 1.90816 1.36450 1.64477 1.50309 1.20403 0.93086 0.94574 1.21702 1.18484 0.94030 0.93144 0.90443 1.20924 0.96040 0.96466 1.03524 0.91099 0.91171 0.87861 0.90885 0.90791 0.73284 0.90839 0.95717 0.91836 0.90005 0.88504 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.87 6.20 71.98 0.45 1.31 16 3 O -0.35 -7.87 10.04 -58.17 -0.58 -8.46 16 4 C 0.55 15.34 7.91 69.96 0.55 15.89 16 5 O -0.52 -16.17 13.71 19.39 0.27 -15.91 16 6 C -0.30 -8.82 6.32 23.50 0.15 -8.67 16 7 S 0.33 8.12 23.06 -56.49 -1.30 6.82 16 8 C 0.10 3.05 7.73 84.64 0.65 3.70 16 9 N -0.53 -16.08 10.36 -193.58 -2.01 -18.09 16 10 C 0.43 13.06 11.44 180.26 2.06 15.12 16 11 N -0.52 -20.82 2.57 -651.87 -1.68 -22.49 16 12 C 0.24 11.11 5.12 85.63 0.44 11.55 16 13 C -0.56 -28.83 9.38 25.60 0.24 -28.59 16 14 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 15 C 0.03 1.34 5.46 84.66 0.46 1.80 16 16 N -0.91 -49.88 13.29 21.45 0.28 -49.60 16 17 Si 0.96 41.64 29.54 68.60 2.03 43.66 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 C 0.55 24.12 7.68 86.74 0.67 24.79 16 22 O -0.54 -27.99 14.74 -4.72 -0.07 -28.06 16 23 C -0.28 -10.57 6.04 -20.09 -0.12 -10.69 16 24 C 0.05 1.83 5.85 -20.50 -0.12 1.71 16 25 C -0.11 -3.90 9.02 71.24 0.64 -3.26 16 26 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.25 5.35 8.00 -2.91 -0.02 5.33 16 32 H 0.07 3.16 8.00 -2.39 -0.02 3.14 16 33 H 0.02 1.34 7.45 -2.39 -0.02 1.33 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.10 3.23 5.73 -2.39 -0.01 3.22 16 37 H 0.06 2.50 6.50 -2.39 -0.02 2.49 16 Total: -1.00 -67.07 337.70 4.87 -62.20 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.12 Total: 5.91 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 6.81 Total: 24.01 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -3.40 Total: -90.18 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.39 Total: -52.42 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -1.30 Total: 6.82 kcal Total: -67.07 4.87 -62.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014197081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -67.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds