Wall clock time and date at job start Fri Apr 10 2020 18:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35974 * 116.99844 * 2 1 4 4 C 1.37752 * 119.94081 * 359.97438 * 3 2 1 5 5 C 1.40781 * 119.77529 * 179.97438 * 4 3 2 6 6 C 1.41163 * 120.16627 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00080 * 153.78778 * 6 5 4 8 8 C 1.39867 * 120.00031 * 333.79017 * 6 5 4 9 9 N 1.30898 * 120.00060 * 343.85052 * 8 6 5 10 10 Si 1.86799 * 120.00088 * 163.84164 * 8 6 5 11 11 H 1.48496 * 109.47399 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46664 * 120.00287 * 10 8 6 13 13 H 1.48501 * 109.47452 * 240.00190 * 10 8 6 14 14 C 1.40968 * 119.67222 * 0.02562 * 5 4 3 15 15 Br 1.89104 * 120.06041 * 179.97438 * 14 5 4 16 16 C 1.37567 * 119.87927 * 0.02562 * 14 5 4 17 17 C 1.39111 * 120.22063 * 359.97438 * 16 14 5 18 18 O 1.35742 * 119.82874 * 180.02562 * 17 16 14 19 19 C 1.42897 * 117.00207 * 359.97438 * 18 17 16 20 20 F 1.39897 * 109.47558 * 300.00584 * 19 18 17 21 21 F 1.39902 * 109.46813 * 60.00233 * 19 18 17 22 22 H 1.08991 * 109.47481 * 299.99758 * 1 2 3 23 23 H 1.09003 * 109.46885 * 60.00369 * 1 2 3 24 24 H 1.09008 * 109.46771 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.11433 * 0.27421 * 4 3 2 26 26 H 0.97003 * 120.00378 * 185.02725 * 9 8 6 27 27 H 1.08003 * 119.88881 * 179.97438 * 16 14 5 28 28 H 1.08999 * 109.47409 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2948 2.3660 -0.0005 5 6 1.9375 3.6186 0.0000 6 6 1.1755 4.8069 0.0000 7 1 1.5902 5.7143 0.4135 8 6 -0.1166 4.8091 -0.5354 9 7 -0.5060 3.8280 -1.3095 10 14 -1.2867 6.2121 -0.1457 11 1 -0.6095 7.1887 0.7446 12 1 -1.6873 6.8870 -1.4064 13 1 -2.4934 5.6761 0.5338 14 6 3.3459 3.6803 0.0006 15 35 4.2206 5.3568 0.0006 16 6 4.0827 2.5186 0.0000 17 6 3.4427 1.2834 -0.0005 18 8 4.1776 0.1422 -0.0005 19 6 5.5993 0.2860 -0.0005 20 9 5.9970 0.9892 -1.1427 21 9 5.9969 0.9891 1.1418 22 1 -0.3634 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 0.2163 2.3105 0.0035 26 1 -1.3747 3.8648 -1.7395 27 1 5.1617 2.5657 0.0000 28 1 6.0643 -0.6998 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040549350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:48 Heat of formation + Delta-G solvation = -180.755799 kcal Electronic energy + Delta-G solvation = -19687.805215 eV Core-core repulsion = 15999.425287 eV Total energy + Delta-G solvation = -3688.379928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 321.980 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.13129 -48.14114 -40.96568 -39.01443 -37.92063 -35.33099 -32.24433 -31.38062 -29.68665 -28.42150 -27.40602 -25.90865 -23.12449 -22.48342 -19.98488 -19.64700 -18.70276 -18.59244 -17.96915 -17.03475 -16.66176 -16.51824 -16.10076 -15.26372 -15.21893 -14.74170 -14.66119 -14.64173 -14.46216 -13.93881 -13.77906 -13.43143 -13.09217 -12.90063 -12.68334 -12.54993 -12.24755 -12.12998 -11.82617 -11.71285 -11.17555 -10.75616 -10.65180 -9.40877 -8.84707 -8.63378 -6.44901 0.67136 0.73977 1.24849 1.40328 1.46667 1.54995 2.03149 2.18588 2.52326 2.55437 2.73502 3.40571 3.71036 3.88124 4.11844 4.42182 4.47126 4.55192 4.68311 4.83382 4.89977 5.09094 5.18370 5.32697 5.75811 5.91931 6.08278 6.30711 6.60788 6.74918 6.85919 8.21643 Molecular weight = 321.98amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.007427 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.191886 B = 3769.071129 C = 5602.347387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.330 6.330 3 C 0.135 3.865 4 C -0.235 4.235 5 C 0.117 3.883 6 C -0.465 4.465 7 H 0.092 0.908 8 C 0.042 3.958 9 N -0.809 5.809 10 Si 0.980 3.020 11 H -0.258 1.258 12 H -0.265 1.265 13 H -0.260 1.260 14 C -0.213 4.213 15 Br -0.074 7.074 16 C -0.091 4.091 17 C -0.059 4.059 18 O -0.325 6.325 19 C 0.400 3.600 20 F -0.218 7.218 21 F -0.216 7.216 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.126 0.874 25 H 0.142 0.858 26 H 0.294 0.706 27 H 0.130 0.870 28 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -3.687 1.774 5.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.244 6.244 3 C 0.089 3.911 4 C -0.256 4.256 5 C 0.112 3.888 6 C -0.493 4.493 7 H 0.110 0.890 8 C -0.175 4.175 9 N -0.433 5.433 10 Si 0.801 3.199 11 H -0.182 1.182 12 H -0.189 1.189 13 H -0.185 1.185 14 C -0.293 4.293 15 Br 0.010 6.990 16 C -0.112 4.112 17 C -0.103 4.103 18 O -0.244 6.244 19 C 0.311 3.689 20 F -0.200 7.200 21 F -0.198 7.198 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.144 0.856 25 H 0.159 0.841 26 H 0.105 0.895 27 H 0.147 0.853 28 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.907 -3.520 1.672 5.518 hybrid contribution -0.613 0.665 -0.087 0.908 sum 3.294 -2.855 1.585 4.639 Atomic orbital electron populations 1.23125 0.77417 1.04577 1.01252 1.85968 1.22549 1.26637 1.89254 1.18324 0.88794 0.85179 0.98797 1.21258 1.00100 0.90021 1.14220 1.17510 0.89534 0.94030 0.87718 1.19972 0.98330 0.96637 1.34316 0.89001 1.26759 0.99073 0.99582 0.92134 1.69834 1.21373 1.31984 1.20142 0.85162 0.77543 0.77782 0.79442 1.18189 1.18937 1.18487 1.21413 0.94291 0.89442 1.24166 1.96239 1.77335 1.27038 1.98349 1.20759 0.98936 0.90143 1.01316 1.17574 0.87897 0.84540 1.20282 1.86429 1.17342 1.30190 1.90450 1.24217 0.80280 0.93581 0.70860 1.93037 1.90696 1.83132 1.53089 1.93036 1.90688 1.83124 1.52984 0.93279 0.93392 0.85564 0.84070 0.89475 0.85255 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 9.81 113.37 1.11 2.15 15 2 O -0.33 -14.08 10.27 -79.28 -0.81 -14.90 15 3 C 0.13 6.46 6.70 22.54 0.15 6.62 15 4 C -0.23 -11.82 7.64 22.78 0.17 -11.65 15 5 C 0.12 6.09 5.56 -21.27 -0.12 5.97 15 6 C -0.46 -23.51 8.43 23.38 0.20 -23.31 15 7 H 0.09 4.57 6.89 -2.91 -0.02 4.55 15 8 C 0.04 1.96 5.16 85.23 0.44 2.40 15 9 N -0.81 -38.56 10.96 21.82 0.24 -38.32 15 10 Si 0.98 35.65 29.59 68.60 2.03 37.68 15 11 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 12 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 13 H -0.26 -8.99 7.11 99.48 0.71 -8.29 15 14 C -0.21 -10.51 6.28 22.78 0.14 -10.37 15 15 Br -0.07 -3.17 32.08 -20.37 -0.65 -3.82 15 16 C -0.09 -4.25 7.95 22.32 0.18 -4.07 15 17 C -0.06 -2.76 6.53 22.86 0.15 -2.61 15 18 O -0.33 -12.82 10.20 -76.68 -0.78 -13.60 15 19 C 0.40 11.78 5.98 113.37 0.68 12.45 15 20 F -0.22 -7.26 15.56 44.97 0.70 -6.56 15 21 F -0.22 -7.09 15.56 44.97 0.70 -6.39 15 22 H 0.05 1.62 7.65 -2.39 -0.02 1.60 15 23 H 0.05 1.70 7.66 -2.39 -0.02 1.68 15 24 H 0.13 3.12 8.14 -2.38 -0.02 3.10 15 25 H 0.14 7.00 4.44 -2.91 -0.01 6.99 15 26 H 0.29 12.50 8.31 -92.71 -0.77 11.73 15 27 H 0.13 5.64 5.06 -2.91 -0.01 5.63 15 28 H 0.23 3.62 8.14 -2.39 -0.02 3.60 15 Total: -1.00 -60.75 271.86 5.75 -55.00 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.23 Total: 13.33 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 3.10 Total: -22.42 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.24 Total: -38.32 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.60 Total: -28.49 kcal Atomic # 9 Polarization: -14.35 SS G_CDS: 1.40 Total: -12.95 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 35 Polarization: -3.17 SS G_CDS: -0.65 Total: -3.82 kcal Total: -60.75 5.75 -55.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040549350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.759 kcal (2) G-P(sol) polarization free energy of solvation -60.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds