Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35963 * 117.00298 * 2 1 4 4 C 1.37834 * 120.01426 * 0.02562 * 3 2 1 5 5 C 1.40801 * 119.65889 * 179.97438 * 4 3 2 6 6 C 1.41198 * 120.15316 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00000 * 334.51999 * 6 5 4 8 8 C 1.39873 * 119.99816 * 154.51034 * 6 5 4 9 9 N 1.30885 * 119.99988 * 343.09343 * 8 6 5 10 10 Si 1.86805 * 119.99927 * 163.09283 * 8 6 5 11 11 H 1.48498 * 109.47213 * 59.99778 * 10 8 6 12 12 H 1.48498 * 109.47104 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46972 * 299.99985 * 10 8 6 14 14 C 1.40839 * 119.69297 * 0.02562 * 5 4 3 15 15 C 1.36525 * 120.02201 * 359.97438 * 14 5 4 16 16 Br 1.89100 * 119.82659 * 179.97438 * 15 14 5 17 17 C 1.39243 * 120.34524 * 359.75485 * 15 14 5 18 18 O 1.35752 * 119.84782 * 180.25093 * 17 15 14 19 19 C 1.42894 * 116.99977 * 270.25075 * 18 17 15 20 20 F 1.39896 * 109.47672 * 299.99918 * 19 18 17 21 21 F 1.39905 * 109.46920 * 60.00018 * 19 18 17 22 22 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46874 * 60.00167 * 1 2 3 24 24 H 1.09002 * 109.47306 * 299.99923 * 1 2 3 25 25 H 1.07998 * 120.17011 * 359.95382 * 4 3 2 26 26 H 0.96999 * 120.00213 * 180.02562 * 9 8 6 27 27 H 1.07999 * 119.98870 * 179.97438 * 14 5 4 28 28 H 1.09004 * 109.47015 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2960 2.3676 0.0005 5 6 1.9430 3.6181 0.0011 6 6 1.1846 4.8091 0.0011 7 1 0.1825 4.8112 -0.4017 8 6 1.7311 5.9862 0.5229 9 7 2.7843 5.9313 1.2981 10 14 0.9578 7.6366 0.1133 11 1 -0.4499 7.6545 0.5856 12 1 1.7195 8.7203 0.7846 13 1 0.9896 7.8471 -1.3564 14 6 3.3502 3.6755 0.0005 15 6 4.0809 2.5222 0.0000 16 35 5.9701 2.6057 -0.0015 17 6 3.4423 1.2849 0.0051 18 8 4.1788 0.1445 0.0097 19 6 4.5352 -0.4026 -1.2613 20 9 3.3744 -0.7078 -1.9799 21 9 5.2934 0.5317 -1.9751 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 0.2173 2.3146 0.0002 26 1 3.1631 6.7475 1.6602 27 1 3.8515 4.6321 0.0005 28 1 5.1214 -1.3099 -1.1148 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040549356.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = -180.551304 kcal Electronic energy + Delta-G solvation = -19811.672728 eV Core-core repulsion = 16123.301668 eV Total energy + Delta-G solvation = -3688.371060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 321.980 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.75495 -47.90145 -40.93929 -38.79421 -37.98372 -35.29944 -32.76776 -31.04470 -29.71035 -28.35151 -27.53379 -25.74034 -22.95856 -22.50737 -19.75972 -19.56074 -18.84130 -18.51804 -17.65720 -17.29450 -16.65434 -16.56660 -16.24953 -15.12511 -14.96715 -14.75035 -14.63914 -14.32764 -14.25822 -13.80050 -13.56663 -13.19897 -12.97387 -12.84232 -12.77303 -12.34176 -12.26840 -12.20607 -11.87222 -11.46532 -11.33190 -10.97778 -10.80661 -9.43246 -8.95416 -8.80566 -6.55109 0.39856 0.83442 0.84917 1.39330 1.46786 1.53159 2.14750 2.30175 2.58218 2.70218 2.95439 3.43879 3.94522 4.03112 4.38326 4.44448 4.49011 4.68610 4.75349 4.79717 4.88506 5.05263 5.16320 5.57826 5.71035 5.92015 6.15179 6.28033 6.50870 6.69204 6.88964 8.14073 Molecular weight = 321.98amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.007032 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.111085 B = 3981.032404 C = 5507.161702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.325 6.325 3 C 0.165 3.835 4 C -0.315 4.315 5 C 0.117 3.883 6 C -0.464 4.464 7 H 0.094 0.906 8 C 0.037 3.963 9 N -0.801 5.801 10 Si 0.989 3.011 11 H -0.254 1.254 12 H -0.267 1.267 13 H -0.258 1.258 14 C -0.173 4.173 15 C -0.035 4.035 16 Br -0.054 7.054 17 C -0.101 4.101 18 O -0.314 6.314 19 C 0.379 3.621 20 F -0.220 7.220 21 F -0.217 7.217 22 H 0.124 0.876 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.128 0.872 26 H 0.297 0.703 27 H 0.123 0.877 28 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -5.659 -2.422 6.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.238 6.238 3 C 0.118 3.882 4 C -0.335 4.335 5 C 0.113 3.887 6 C -0.491 4.491 7 H 0.112 0.888 8 C -0.182 4.182 9 N -0.424 5.424 10 Si 0.808 3.192 11 H -0.178 1.178 12 H -0.191 1.191 13 H -0.183 1.183 14 C -0.194 4.194 15 C -0.114 4.114 16 Br 0.031 6.969 17 C -0.147 4.147 18 O -0.232 6.232 19 C 0.290 3.710 20 F -0.202 7.202 21 F -0.199 7.199 22 H 0.142 0.858 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.146 0.854 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.375 -5.773 -2.140 6.599 hybrid contribution -0.859 0.946 -0.302 1.313 sum 1.515 -4.827 -2.442 5.618 Atomic orbital electron populations 1.23217 0.77260 1.04918 1.01546 1.86003 1.22768 1.26501 1.88577 1.18875 0.90461 0.84727 0.94119 1.21152 0.99176 0.91245 1.21934 1.17750 0.91584 0.93012 0.86353 1.19949 1.01927 0.93193 1.34038 0.88795 1.26931 0.94589 1.05105 0.91591 1.69861 1.19103 1.33114 1.20307 0.85131 0.79397 0.74795 0.79855 1.17791 1.19088 1.18262 1.20947 0.94261 0.95874 1.08289 1.21440 0.89518 0.94775 1.05714 1.96411 1.03673 1.99055 1.97779 1.16930 0.86399 0.84082 1.27310 1.86635 1.70070 1.39400 1.27139 1.24466 0.79019 0.90767 0.76767 1.93004 1.53955 1.93270 1.79985 1.93050 1.76188 1.70379 1.80270 0.85783 0.92785 0.92702 0.85434 0.89134 0.85923 0.77419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.81 113.37 1.11 1.86 15 2 O -0.32 -13.14 9.72 -79.23 -0.77 -13.91 15 3 C 0.17 7.66 6.44 22.55 0.15 7.80 15 4 C -0.31 -14.90 8.78 22.80 0.20 -14.70 15 5 C 0.12 6.04 5.56 -21.29 -0.12 5.92 15 6 C -0.46 -22.79 9.04 23.39 0.21 -22.58 15 7 H 0.09 4.31 7.90 -2.91 -0.02 4.28 15 8 C 0.04 1.69 5.15 85.23 0.44 2.13 15 9 N -0.80 -38.76 10.96 21.82 0.24 -38.52 15 10 Si 0.99 34.44 29.59 68.60 2.03 36.47 15 11 H -0.25 -8.46 7.11 99.48 0.71 -7.76 15 12 H -0.27 -8.86 7.11 99.48 0.71 -8.16 15 13 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 14 C -0.17 -8.91 8.34 22.51 0.19 -8.72 15 15 C -0.03 -1.68 6.00 22.11 0.13 -1.54 15 16 Br -0.05 -2.23 31.28 -20.37 -0.64 -2.87 15 17 C -0.10 -4.78 5.36 22.89 0.12 -4.65 15 18 O -0.31 -13.09 9.45 -76.86 -0.73 -13.82 15 19 C 0.38 12.89 6.35 113.37 0.72 13.61 15 20 F -0.22 -8.22 16.44 44.97 0.74 -7.49 15 21 F -0.22 -8.09 15.14 44.97 0.68 -7.41 15 22 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.05 1.55 7.66 -2.39 -0.02 1.54 15 24 H 0.05 1.58 7.66 -2.39 -0.02 1.57 15 25 H 0.13 5.43 6.29 -2.91 -0.02 5.41 15 26 H 0.30 12.95 8.30 -92.71 -0.77 12.18 15 27 H 0.12 6.52 6.18 -2.91 -0.02 6.50 15 28 H 0.21 4.55 8.14 -2.38 -0.02 4.53 15 Total: -1.00 -59.72 274.99 5.93 -53.79 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.22 Total: 14.62 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 3.15 Total: -20.86 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.24 Total: -38.52 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.50 Total: -27.73 kcal Atomic # 9 Polarization: -16.32 SS G_CDS: 1.42 Total: -14.90 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Atomic # 35 Polarization: -2.23 SS G_CDS: -0.64 Total: -2.87 kcal Total: -59.72 5.93 -53.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040549356.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.761 kcal (2) G-P(sol) polarization free energy of solvation -59.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds