Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47149 * 2 1 4 4 O 1.42093 * 110.54547 * 291.62539 * 3 2 1 5 5 O 1.42105 * 110.53941 * 68.37879 * 3 2 1 6 6 N 1.65595 * 104.44822 * 179.97438 * 3 2 1 7 7 C 1.46967 * 120.59833 * 269.72527 * 6 3 2 8 8 C 1.53807 * 108.40304 * 124.75648 * 7 6 3 9 9 N 1.46964 * 108.57809 * 49.63867 * 8 7 6 10 10 C 1.34775 * 120.59459 * 124.62770 * 9 8 7 11 11 O 1.21284 * 120.00085 * 180.02562 * 10 9 8 12 12 C 1.50700 * 120.00088 * 0.02562 * 10 9 8 13 13 S 1.81003 * 109.47180 * 180.02562 * 12 10 9 14 14 C 1.76204 * 99.99908 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.38796 * 119.99756 * 179.97438 * 14 13 12 17 17 N 1.31636 * 119.99724 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00179 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47282 * 89.99657 * 18 16 14 20 20 H 1.48501 * 109.46682 * 209.99820 * 18 16 14 21 21 H 1.48501 * 109.46872 * 329.99068 * 18 16 14 22 22 C 1.46962 * 118.81098 * 304.64588 * 9 8 7 23 23 C 1.46964 * 120.59250 * 90.00299 * 6 3 2 24 24 H 1.09002 * 109.47153 * 299.99990 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99620 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00010 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00201 * 2 1 3 29 29 H 1.09005 * 109.60777 * 244.54472 * 7 6 3 30 30 H 1.08997 * 109.60617 * 5.04658 * 7 6 3 31 31 H 1.08997 * 109.74157 * 289.85050 * 8 7 6 32 32 H 1.08999 * 109.53185 * 169.30155 * 8 7 6 33 33 H 1.09006 * 109.46959 * 300.00281 * 12 10 9 34 34 H 1.08999 * 109.47198 * 60.00233 * 12 10 9 35 35 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.61359 * 295.48321 * 22 9 8 37 37 H 1.09000 * 109.75267 * 175.05412 * 22 9 8 38 38 H 1.08993 * 109.61198 * 354.94694 * 23 6 3 39 39 H 1.08996 * 109.61512 * 115.45913 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.5294 1.5060 1.2661 8 6 5.3841 0.2272 1.2668 9 7 6.1297 0.1616 0.0021 10 6 7.4723 0.0445 0.0026 11 8 8.0769 -0.0083 -1.0475 12 6 8.2225 -0.0210 1.3080 13 16 9.9955 -0.1749 0.9779 14 6 10.6105 -0.2279 2.6283 15 1 9.9261 -0.1688 3.4617 16 6 11.9742 -0.3467 2.8572 17 7 12.4337 -0.3858 4.0902 18 14 13.1578 -0.4497 1.4157 19 1 13.5929 0.9177 1.0337 20 1 14.3428 -1.2557 1.8049 21 1 12.4786 -1.0934 0.2626 22 6 5.3850 0.2264 -1.2633 23 6 4.5298 1.4997 -1.2640 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1745 2.3805 1.3520 30 1 3.8300 1.4809 2.1016 31 1 4.7389 -0.6467 1.3569 32 1 6.0832 0.2567 2.1025 33 1 8.0372 0.8886 1.8795 34 1 7.8826 -0.8847 1.8794 35 1 13.3868 -0.4685 4.2502 36 1 4.7399 -0.6475 -1.3534 37 1 6.0827 0.2539 -2.1003 38 1 3.8308 1.4703 -2.0997 39 1 5.1750 2.3735 -1.3542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052051293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = -95.234408 kcal Electronic energy + Delta-G solvation = -23299.032824 eV Core-core repulsion = 19688.632101 eV Total energy + Delta-G solvation = -3610.400723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.07138 -37.63349 -37.55585 -36.32960 -34.10194 -33.62997 -32.47641 -31.99164 -29.52382 -27.01795 -25.65003 -24.59272 -24.17174 -22.22359 -20.02587 -18.93260 -18.22412 -17.51076 -16.84944 -16.73486 -16.58363 -15.94301 -15.62223 -15.33466 -15.00175 -14.64630 -14.62274 -14.02833 -13.90304 -13.64687 -13.54482 -13.03489 -12.93671 -12.85955 -12.80027 -12.48106 -12.31582 -12.13935 -12.07788 -11.85511 -11.69161 -11.35192 -11.29317 -11.04322 -11.03569 -10.64111 -9.90078 -9.83079 -9.57954 -9.04112 -8.61003 -8.54399 -6.97097 -6.32687 -4.05108 -0.19640 2.13481 2.63114 2.81590 3.10733 3.30415 3.42510 3.47163 3.53111 3.67007 4.01373 4.22427 4.25003 4.29342 4.47790 4.58265 4.67126 4.81963 4.84316 4.87988 4.99648 5.05023 5.06575 5.13534 5.18787 5.28118 5.38278 5.45981 5.53923 5.58893 5.66590 5.75615 5.90362 6.08999 6.37133 7.30723 7.90239 8.31226 8.37367 9.13442 10.76483 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.032528 B = 0.002777 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.589943 B =10079.858435 C =10444.943774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.633 4.633 3 S 2.607 3.393 4 O -0.953 6.953 5 O -0.952 6.952 6 N -1.000 6.000 7 C 0.104 3.896 8 C 0.091 3.909 9 N -0.617 5.617 10 C 0.535 3.465 11 O -0.516 6.516 12 C -0.123 4.123 13 S -0.142 6.142 14 C -0.521 4.521 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.098 3.902 23 C 0.106 3.894 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.352 0.187 -7.691 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.762 4.762 3 S 2.700 3.300 4 O -0.943 6.943 5 O -0.942 6.942 6 N -0.837 5.837 7 C -0.022 4.022 8 C -0.034 4.034 9 N -0.354 5.354 10 C 0.323 3.677 11 O -0.390 6.390 12 C -0.274 4.274 13 S 0.084 5.916 14 C -0.669 4.669 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.516 5.516 18 Si 0.682 3.318 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.027 4.027 23 C -0.020 4.020 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.759 0.903 -9.125 25.467 hybrid contribution 0.130 -0.790 0.984 1.269 sum -23.628 0.113 -8.141 24.992 Atomic orbital electron populations 1.21505 0.90490 1.05145 1.03447 1.30579 1.07203 1.26660 1.11751 1.05245 0.72842 0.77546 0.74350 1.93598 1.83056 1.72437 1.45219 1.93605 1.83036 1.72421 1.45129 1.57707 1.24092 1.89713 1.12209 1.22001 0.96290 0.99035 0.84875 1.22255 0.96235 0.97608 0.87321 1.47937 1.05912 1.75000 1.06507 1.20351 0.81033 0.75001 0.91349 1.90698 1.66798 1.48171 1.33324 1.23320 1.01201 1.05614 0.97229 1.84829 0.96500 1.96574 1.13663 1.22292 0.96125 1.58454 0.90027 0.89358 1.24713 0.97458 0.93183 0.95939 1.69937 1.14772 1.47706 1.19202 0.86734 0.81546 0.79777 0.83786 1.19195 1.19936 1.15940 1.21934 0.95585 0.96923 0.88256 1.21893 0.96089 0.99245 0.84735 0.90930 0.90986 0.89945 0.85025 0.84945 0.89771 0.87777 0.90854 0.87745 0.88400 0.88427 0.91898 0.91395 0.87527 0.88026 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.92 37.16 0.37 -0.33 16 2 C -0.63 -3.00 6.90 37.16 0.26 -2.74 16 3 S 2.61 21.31 5.42 -107.50 -0.58 20.73 16 4 O -0.95 -10.59 16.70 -57.54 -0.96 -11.55 16 5 O -0.95 -10.58 16.69 -57.54 -0.96 -11.54 16 6 N -1.00 -8.08 3.19 -113.01 -0.36 -8.44 16 7 C 0.10 0.83 6.52 -3.37 -0.02 0.80 16 8 C 0.09 0.77 6.52 -3.37 -0.02 0.75 16 9 N -0.62 -7.26 2.95 -172.22 -0.51 -7.77 16 10 C 0.53 8.90 7.72 -10.99 -0.08 8.81 16 11 O -0.52 -10.48 15.27 5.55 0.08 -10.39 16 12 C -0.12 -2.24 4.50 36.01 0.16 -2.08 16 13 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 14 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 15 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 16 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 17 N -0.88 -26.13 13.97 55.49 0.78 -25.35 16 18 Si 0.86 21.42 27.74 -169.99 -4.72 16.71 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 22 C 0.10 0.92 6.59 -3.59 -0.02 0.90 16 23 C 0.11 0.88 6.49 -3.59 -0.02 0.86 16 24 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.67 7.05 -51.93 -0.37 0.30 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.90 5.91 -51.93 -0.31 0.59 16 33 H 0.10 1.64 7.72 -51.91 -0.40 1.24 16 34 H 0.10 1.63 7.91 -51.92 -0.41 1.22 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.11 1.17 7.00 -51.93 -0.36 0.80 16 38 H 0.10 0.68 7.06 -51.93 -0.37 0.31 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.38 15.07 5.19 5.19 Total: -1.00 -37.46 344.38 -8.80 -46.26 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.60 Total: -3.70 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.83 Total: -4.67 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.09 Total: -41.56 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.84 Total: -33.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.71 kcal Atomic # 16 Polarization: 17.83 SS G_CDS: -2.58 Total: 15.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.46 -8.80 -46.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052051293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.975 kcal (2) G-P(sol) polarization free energy of solvation -37.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds