Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47149 * 2 1 4 4 O 1.42093 * 110.54547 * 291.62539 * 3 2 1 5 5 O 1.42105 * 110.53941 * 68.37879 * 3 2 1 6 6 N 1.65595 * 104.44822 * 179.97438 * 3 2 1 7 7 C 1.46967 * 120.59833 * 269.72527 * 6 3 2 8 8 C 1.53807 * 108.40304 * 124.75648 * 7 6 3 9 9 N 1.46964 * 108.57809 * 49.63867 * 8 7 6 10 10 C 1.34775 * 120.59459 * 124.62770 * 9 8 7 11 11 O 1.21284 * 120.00085 * 180.02562 * 10 9 8 12 12 C 1.50700 * 120.00088 * 0.02562 * 10 9 8 13 13 S 1.81003 * 109.47180 * 180.02562 * 12 10 9 14 14 C 1.76204 * 99.99908 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99862 * 0.02562 * 14 13 12 16 16 C 1.38796 * 119.99756 * 179.97438 * 14 13 12 17 17 N 1.31636 * 119.99724 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 120.00179 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47282 * 89.99657 * 18 16 14 20 20 H 1.48501 * 109.46682 * 209.99820 * 18 16 14 21 21 H 1.48501 * 109.46872 * 329.99068 * 18 16 14 22 22 C 1.46962 * 118.81098 * 304.64588 * 9 8 7 23 23 C 1.46964 * 120.59250 * 90.00299 * 6 3 2 24 24 H 1.09002 * 109.47153 * 299.99990 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99620 * 1 2 3 26 26 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00010 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00201 * 2 1 3 29 29 H 1.09005 * 109.60777 * 244.54472 * 7 6 3 30 30 H 1.08997 * 109.60617 * 5.04658 * 7 6 3 31 31 H 1.08997 * 109.74157 * 289.85050 * 8 7 6 32 32 H 1.08999 * 109.53185 * 169.30155 * 8 7 6 33 33 H 1.09006 * 109.46959 * 300.00281 * 12 10 9 34 34 H 1.08999 * 109.47198 * 60.00233 * 12 10 9 35 35 H 0.96998 * 119.99937 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.61359 * 295.48321 * 22 9 8 37 37 H 1.09000 * 109.75267 * 175.05412 * 22 9 8 38 38 H 1.08993 * 109.61198 * 354.94694 * 23 6 3 39 39 H 1.08996 * 109.61512 * 115.45913 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.5294 1.5060 1.2661 8 6 5.3841 0.2272 1.2668 9 7 6.1297 0.1616 0.0021 10 6 7.4723 0.0445 0.0026 11 8 8.0769 -0.0083 -1.0475 12 6 8.2225 -0.0210 1.3080 13 16 9.9955 -0.1749 0.9779 14 6 10.6105 -0.2279 2.6283 15 1 9.9261 -0.1688 3.4617 16 6 11.9742 -0.3467 2.8572 17 7 12.4337 -0.3858 4.0902 18 14 13.1578 -0.4497 1.4157 19 1 13.5929 0.9177 1.0337 20 1 14.3428 -1.2557 1.8049 21 1 12.4786 -1.0934 0.2626 22 6 5.3850 0.2264 -1.2633 23 6 4.5298 1.4997 -1.2640 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1745 2.3805 1.3520 30 1 3.8300 1.4809 2.1016 31 1 4.7389 -0.6467 1.3569 32 1 6.0832 0.2567 2.1025 33 1 8.0372 0.8886 1.8795 34 1 7.8826 -0.8847 1.8794 35 1 13.3868 -0.4685 4.2502 36 1 4.7399 -0.6475 -1.3534 37 1 6.0827 0.2539 -2.1003 38 1 3.8308 1.4703 -2.0997 39 1 5.1750 2.3735 -1.3542 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052051293.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = -124.120675 kcal Electronic energy + Delta-G solvation = -23300.285427 eV Core-core repulsion = 19688.632101 eV Total energy + Delta-G solvation = -3611.653326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.13748 -38.62141 -38.28368 -37.05864 -35.04932 -34.65726 -34.00077 -32.77742 -30.79476 -28.01109 -27.70652 -25.00945 -24.90715 -23.07526 -20.93791 -19.98028 -19.47760 -18.75766 -17.75245 -17.44550 -17.37566 -17.15136 -16.89506 -16.74144 -15.91661 -15.68736 -15.35455 -15.14816 -14.95121 -14.89273 -14.69453 -14.11476 -13.69085 -13.65352 -13.48210 -13.39325 -13.34731 -13.23763 -13.07281 -13.01509 -12.67006 -12.59305 -12.38014 -12.30449 -12.05526 -11.85482 -11.59687 -11.16435 -10.93534 -10.55649 -10.48947 -9.49651 -8.98552 -8.50709 -6.21169 -0.79112 0.98539 1.31996 1.44265 1.50472 1.52744 1.60338 2.08977 2.25471 2.69435 2.86681 2.87884 3.08587 3.42403 3.60386 3.77907 3.82578 3.93381 4.14944 4.18532 4.20392 4.26465 4.36771 4.41662 4.45307 4.63001 4.69583 4.73803 4.85250 4.88979 4.91854 5.07581 5.14422 5.42945 5.48607 5.71867 6.12814 6.22655 6.94951 7.08486 8.61552 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.032528 B = 0.002777 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.589943 B =10079.858435 C =10444.943774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.607 4.607 3 S 2.606 3.394 4 O -0.990 6.990 5 O -0.988 6.988 6 N -1.000 6.000 7 C 0.103 3.897 8 C 0.084 3.916 9 N -0.604 5.604 10 C 0.535 3.465 11 O -0.561 6.561 12 C -0.108 4.108 13 S -0.180 6.180 14 C -0.525 4.525 15 H 0.064 0.936 16 C 0.045 3.955 17 N -0.917 5.917 18 Si 0.913 3.087 19 H -0.264 1.264 20 H -0.260 1.260 21 H -0.236 1.236 22 C 0.096 3.904 23 C 0.110 3.890 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.276 0.724 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.358 -1.193 -8.361 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.740 4.740 3 S 2.705 3.295 4 O -0.980 6.980 5 O -0.979 6.979 6 N -0.837 5.837 7 C -0.022 4.022 8 C -0.039 4.039 9 N -0.338 5.338 10 C 0.323 3.677 11 O -0.440 6.440 12 C -0.259 4.259 13 S 0.047 5.953 14 C -0.673 4.673 15 H 0.083 0.917 16 C -0.160 4.160 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.189 1.189 20 H -0.185 1.185 21 H -0.160 1.160 22 C -0.028 4.028 23 C -0.016 4.016 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.174 0.826 28 H 0.175 0.825 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.805 -0.427 -9.775 27.597 hybrid contribution 0.498 -0.365 1.235 1.381 sum -25.307 -0.791 -8.540 26.721 Atomic orbital electron populations 1.21688 0.90383 1.06408 1.03551 1.30360 1.07125 1.22253 1.14255 1.05112 0.72485 0.79081 0.72846 1.93548 1.83432 1.74702 1.46336 1.93556 1.83400 1.74673 1.46225 1.57605 1.24058 1.90036 1.12014 1.22029 0.96479 0.98224 0.85515 1.22581 0.96428 0.99374 0.85549 1.47936 1.04411 1.72654 1.08821 1.20015 0.82608 0.75320 0.89774 1.90684 1.68161 1.50872 1.34238 1.23303 0.96464 1.07157 0.98963 1.84764 1.02284 1.96768 1.11494 1.22443 0.96079 1.57544 0.91204 0.91738 1.25547 0.99171 0.93050 0.98231 1.70015 1.15513 1.49028 1.20990 0.85883 0.79819 0.79977 0.80793 1.18908 1.18482 1.15980 1.22151 0.95380 0.98868 0.86406 1.21842 0.96140 0.98008 0.85591 0.91022 0.91061 0.87967 0.82615 0.82463 0.91165 0.85910 0.87193 0.87833 0.87007 0.86601 0.91414 0.87875 0.89240 0.86182 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.92 71.98 0.71 -0.26 16 2 C -0.61 -3.13 6.90 71.98 0.50 -2.63 16 3 S 2.61 37.22 5.42 -56.49 -0.31 36.91 16 4 O -0.99 -20.85 16.70 -127.65 -2.13 -22.99 16 5 O -0.99 -20.72 16.69 -127.65 -2.13 -22.85 16 6 N -1.00 -13.86 3.19 -511.44 -1.63 -15.49 16 7 C 0.10 1.40 6.52 86.56 0.56 1.97 16 8 C 0.08 1.16 6.52 86.56 0.56 1.72 16 9 N -0.60 -12.77 2.95 -817.17 -2.41 -15.18 16 10 C 0.54 17.16 7.72 87.66 0.68 17.84 16 11 O -0.56 -22.65 15.27 -3.04 -0.05 -22.69 16 12 C -0.11 -3.82 4.50 71.24 0.32 -3.50 16 13 S -0.18 -8.82 18.55 -56.49 -1.05 -9.86 16 14 C -0.53 -29.78 10.04 67.95 0.68 -29.10 16 15 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 16 C 0.05 2.62 5.50 84.86 0.47 3.09 16 17 N -0.92 -55.13 13.97 21.65 0.30 -54.83 16 18 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 19 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.24 -11.41 6.74 99.48 0.67 -10.74 16 22 C 0.10 1.57 6.59 86.42 0.57 2.13 16 23 C 0.11 1.62 6.49 86.42 0.56 2.18 16 24 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.12 1.24 7.05 -2.39 -0.02 1.23 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.48 5.91 -2.39 -0.01 1.47 16 33 H 0.11 3.63 7.72 -2.39 -0.02 3.61 16 34 H 0.12 3.67 7.91 -2.40 -0.02 3.65 16 35 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.85 7.00 -2.39 -0.02 1.84 16 38 H 0.12 1.35 7.06 -2.39 -0.02 1.33 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -83.15 344.38 -0.87 -84.02 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.01 Total: 3.20 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.61 Total: -6.55 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -3.74 Total: -85.50 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -4.31 Total: -68.53 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: 28.40 SS G_CDS: -1.35 Total: 27.05 kcal Total: -83.15 -0.87 -84.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052051293.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.100 kcal (2) G-P(sol) polarization free energy of solvation -83.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds