Wall clock time and date at job start Fri Apr 10 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34945 * 126.03667 * 2 1 4 4 C 1.35313 * 107.74866 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.04216 * 179.97438 * 4 3 2 6 6 H 1.09009 * 109.86446 * 26.01304 * 5 4 3 7 7 O 1.43743 * 109.87677 * 147.17412 * 5 4 3 8 8 C 1.44379 * 106.97469 * 145.94154 * 7 5 4 9 9 C 1.54997 * 103.48868 * 319.94142 * 8 7 5 10 10 C 1.54094 * 109.88039 * 265.00851 * 5 4 3 11 11 H 1.09000 * 110.49043 * 119.74006 * 10 5 4 12 12 C 1.53003 * 110.49076 * 357.22164 * 10 5 4 13 13 N 1.46895 * 109.47078 * 175.00207 * 12 10 5 14 14 C 1.46902 * 110.99875 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47070 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47258 * 60.00063 * 15 14 13 17 17 C 1.53001 * 109.47247 * 299.99917 * 15 14 13 18 18 C 1.53003 * 109.46867 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47038 * 180.02562 * 18 15 14 20 20 H 1.08006 * 120.00159 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.39866 * 107.92052 * 0.27120 * 4 3 2 28 28 N 1.30846 * 108.19904 * 359.55182 * 27 4 3 29 29 H 1.09002 * 109.46963 * 89.99662 * 1 2 3 30 30 H 1.09005 * 109.46758 * 209.99088 * 1 2 3 31 31 H 1.08996 * 109.47174 * 329.98989 * 1 2 3 32 32 H 1.08008 * 126.12538 * 359.96821 * 3 2 1 33 33 H 1.09010 * 110.61614 * 78.43896 * 8 7 5 34 34 H 1.08993 * 110.61855 * 201.27647 * 8 7 5 35 35 H 1.08997 * 110.90054 * 278.82367 * 9 8 7 36 36 H 1.08999 * 110.90705 * 155.22670 * 9 8 7 37 37 H 1.08994 * 109.46754 * 54.99898 * 12 10 5 38 38 H 1.09003 * 109.46561 * 294.99918 * 12 10 5 39 39 H 1.00901 * 111.00172 * 303.94981 * 13 12 10 40 40 H 1.08996 * 109.46854 * 59.99830 * 14 13 12 41 41 H 1.09004 * 109.47013 * 299.99824 * 14 13 12 42 42 H 1.09000 * 109.47249 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.46941 * 299.99988 * 16 15 14 44 44 H 1.08996 * 109.47114 * 60.00036 * 16 15 14 45 45 H 1.08996 * 109.47108 * 300.00452 * 17 15 14 46 46 H 1.08996 * 109.47041 * 59.99958 * 17 15 14 47 47 H 1.09000 * 109.47105 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.46825 * 60.00325 * 18 15 14 49 49 H 1.08996 * 109.47396 * 299.99898 * 18 15 14 50 50 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 51 51 H 1.07997 * 125.89994 * 179.73353 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0002 6 1 4.5316 2.5102 0.4492 7 8 5.8273 0.9080 0.7337 8 6 7.0660 1.2729 0.0879 9 6 6.7191 1.2097 -1.4214 10 6 5.2676 1.7475 -1.4434 11 1 5.2544 2.8051 -1.7071 12 6 4.4127 0.9418 -2.4237 13 7 4.8303 1.2429 -3.7995 14 6 4.0297 0.4849 -4.7704 15 6 4.4932 0.8236 -6.1886 16 6 5.9694 0.4531 -6.3449 17 6 4.3143 2.3223 -6.4394 18 6 3.6598 0.0337 -7.1998 19 6 4.1168 0.3668 -8.5967 20 1 4.9209 1.0718 -8.7482 21 6 3.5076 -0.2276 -9.6814 22 7 2.5282 -1.0856 -9.4971 23 14 4.0745 0.1848 -11.4129 24 1 3.2979 1.3421 -11.9256 25 1 3.8572 -0.9880 -12.2975 26 1 5.5191 0.5283 -11.3922 27 6 3.5347 -0.7320 -0.0054 28 7 2.2892 -1.1327 0.0004 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5140 32 1 1.9281 2.1194 -0.0005 33 1 7.3638 2.2824 0.3714 34 1 7.8519 0.5588 0.3339 35 1 6.7593 0.1837 -1.7871 36 1 7.3814 1.8536 -2.0000 37 1 3.3638 1.2090 -2.2956 38 1 4.5429 -0.1228 -2.2292 39 1 4.7801 2.2336 -3.9841 40 1 2.9781 0.7485 -4.6587 41 1 4.1576 -0.5828 -4.5921 42 1 6.2995 0.6940 -7.3554 43 1 6.5634 1.0155 -5.6245 44 1 6.0969 -0.6146 -6.1663 45 1 3.2626 2.5863 -6.3280 46 1 4.9082 2.8847 -5.7190 47 1 4.6441 2.5635 -7.4499 48 1 2.6080 0.2973 -7.0886 49 1 3.7877 -1.0339 -7.0210 50 1 2.2341 -1.3000 -8.5979 51 1 4.4055 -1.3708 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084325859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:26 Heat of formation + Delta-G solvation = 18.460441 kcal Electronic energy + Delta-G solvation = -28109.591320 eV Core-core repulsion = 24431.141899 eV Total energy + Delta-G solvation = -3678.449421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.58899 -39.52192 -37.67157 -34.97283 -33.54827 -32.69913 -31.50139 -31.26324 -28.72348 -26.83722 -26.51260 -26.34264 -25.69718 -23.88120 -22.74049 -22.15551 -21.46387 -20.93077 -19.73281 -18.12898 -17.23249 -16.64568 -16.35377 -15.81081 -15.60135 -15.34324 -14.94491 -14.65244 -14.46604 -14.18949 -13.72862 -13.62672 -13.42014 -13.28023 -13.01137 -12.90424 -12.62328 -12.56886 -12.08866 -11.95204 -11.71419 -11.46695 -11.38838 -11.17329 -11.01497 -10.95848 -10.87493 -10.79724 -10.58508 -10.53277 -10.10499 -9.97631 -9.84125 -9.76217 -9.54961 -9.25113 -8.54184 -8.37356 -8.26066 -8.04654 -6.28062 -3.95640 1.70052 2.34023 2.61669 3.45714 3.49662 3.64975 3.79432 4.22515 4.33735 4.55823 4.59419 4.62734 4.67426 4.88004 4.95961 4.97607 5.08168 5.13408 5.17056 5.22801 5.38726 5.45143 5.47494 5.57529 5.61626 5.68662 5.71998 5.79513 5.86122 5.90670 5.95789 6.05261 6.17040 6.19126 6.28437 6.44508 6.48684 6.59764 6.71643 6.73909 6.77716 6.83657 7.12784 7.15256 7.21703 7.35941 7.44997 7.55267 7.59745 7.69756 8.31803 8.54944 8.96786 9.75167 11.11878 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002951 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.391129 B = 9485.961756 C =10811.741022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.059 3.941 4 C -0.231 4.231 5 C 0.163 3.837 6 H 0.070 0.930 7 O -0.369 6.369 8 C 0.042 3.958 9 C -0.135 4.135 10 C -0.111 4.111 11 H 0.080 0.920 12 C 0.077 3.923 13 N -0.686 5.686 14 C 0.073 3.927 15 C -0.051 4.051 16 C -0.114 4.114 17 C -0.127 4.127 18 C 0.020 3.980 19 C -0.587 4.587 20 H 0.053 0.947 21 C 0.011 3.989 22 N -0.918 5.918 23 Si 1.068 2.932 24 H -0.290 1.290 25 H -0.286 1.286 26 H -0.289 1.289 27 C 0.074 3.926 28 N -0.297 5.297 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.335 0.665 40 H 0.018 0.982 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.001 0.999 49 H 0.005 0.995 50 H 0.268 0.732 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.322 7.992 22.785 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.087 4.087 4 C -0.243 4.243 5 C 0.103 3.897 6 H 0.088 0.912 7 O -0.288 6.288 8 C -0.035 4.035 9 C -0.173 4.173 10 C -0.130 4.130 11 H 0.099 0.901 12 C -0.052 4.052 13 N -0.317 5.317 14 C -0.056 4.056 15 C -0.051 4.051 16 C -0.171 4.171 17 C -0.184 4.184 18 C -0.017 4.017 19 C -0.625 4.625 20 H 0.071 0.929 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.897 3.103 24 H -0.217 1.217 25 H -0.211 1.211 26 H -0.215 1.215 27 C -0.113 4.113 28 N -0.118 5.118 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.189 0.811 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.154 0.846 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.020 0.980 49 H 0.023 0.977 50 H 0.078 0.922 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.558 6.053 21.381 22.276 hybrid contribution -0.217 1.672 1.434 2.214 sum 1.341 7.726 22.815 24.125 Atomic orbital electron populations 1.21860 0.74163 1.04350 1.03592 1.48435 1.06644 1.03778 1.56901 1.22127 0.90615 0.93444 1.02538 1.19798 0.93405 0.94393 1.16681 1.20770 0.85066 0.93171 0.90674 0.91174 1.88895 1.14750 1.72438 1.52670 1.23613 0.87552 1.00238 0.92058 1.23061 0.95338 1.03125 0.95729 1.22526 0.95764 1.00390 0.94315 0.90137 1.22010 0.95488 0.99867 0.87866 1.60552 1.57643 1.12038 1.01485 1.22052 0.93387 0.97776 0.92351 1.20477 0.96812 0.95633 0.92226 1.21573 0.95062 0.99767 1.00702 1.21746 0.99524 0.95648 1.01498 1.19249 0.93961 0.94307 0.94191 1.22050 1.20867 1.28170 0.91417 0.92871 1.25786 0.94818 0.94286 1.04293 1.70744 1.26864 1.32526 1.25370 0.83558 0.75412 0.76118 0.75220 1.21660 1.21148 1.21503 1.23668 0.94906 0.94380 0.98314 1.77424 1.01700 1.08035 1.24664 0.90596 0.89254 0.89579 0.81135 0.92458 0.89069 0.89972 0.90110 0.95600 0.90983 0.84643 0.96421 0.91894 0.92631 0.93737 0.94358 0.94377 0.94671 0.91627 0.98045 0.97692 0.92207 0.80099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.47 59.85 0.69 1.39 16 2 N -0.38 -4.09 4.01 -68.16 -0.27 -4.36 16 3 C 0.06 0.58 10.62 -17.23 -0.18 0.40 16 4 C -0.23 -2.54 3.33 -105.05 -0.35 -2.89 16 5 C 0.16 1.62 3.88 -27.31 -0.11 1.52 16 6 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 7 O -0.37 -4.07 10.89 -35.23 -0.38 -4.46 16 8 C 0.04 0.36 7.72 38.21 0.29 0.66 16 9 C -0.13 -1.29 6.60 -24.72 -0.16 -1.46 16 10 C -0.11 -1.10 3.21 -89.09 -0.29 -1.39 16 11 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 12 C 0.08 0.96 3.81 -3.82 -0.01 0.95 16 13 N -0.69 -9.81 5.60 -113.78 -0.64 -10.44 16 14 C 0.07 1.30 4.65 -3.82 -0.02 1.28 16 15 C -0.05 -1.03 0.60 -154.51 -0.09 -1.13 16 16 C -0.11 -2.25 8.06 37.16 0.30 -1.95 16 17 C -0.13 -2.38 7.89 37.16 0.29 -2.09 16 18 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 19 C -0.59 -16.36 7.65 -34.44 -0.26 -16.62 16 20 H 0.05 1.46 5.68 -52.48 -0.30 1.16 16 21 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 22 N -0.92 -28.48 13.65 55.43 0.76 -27.72 16 23 Si 1.07 25.59 29.90 -169.99 -5.08 20.50 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.07 0.92 10.33 -17.36 -0.18 0.74 16 28 N -0.30 -4.02 12.58 30.62 0.39 -3.64 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.17 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.91 7.77 -51.93 -0.40 0.50 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.03 0.34 6.59 -51.93 -0.34 0.00 16 38 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 39 H 0.33 4.55 6.77 -39.29 -0.27 4.29 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 1.18 6.62 -51.93 -0.34 0.84 16 43 H 0.04 0.78 7.60 -51.93 -0.39 0.38 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 47 H 0.06 1.35 6.62 -51.93 -0.34 1.00 16 48 H 0.00 0.04 8.01 -51.93 -0.42 -0.38 16 49 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 50 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 51 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -33.23 394.57 -8.48 -41.72 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.92 Total: 2.39 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -0.27 Total: -19.94 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.23 Total: -46.16 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.38 Total: -4.46 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.23 -8.48 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084325859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.179 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds