Wall clock time and date at job start Fri Apr 10 2020 18:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34945 * 126.03667 * 2 1 4 4 C 1.35313 * 107.74866 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.04216 * 179.97438 * 4 3 2 6 6 H 1.09009 * 109.86446 * 26.01304 * 5 4 3 7 7 O 1.43743 * 109.87677 * 147.17412 * 5 4 3 8 8 C 1.44379 * 106.97469 * 145.94154 * 7 5 4 9 9 C 1.54997 * 103.48868 * 319.94142 * 8 7 5 10 10 C 1.54094 * 109.88039 * 265.00851 * 5 4 3 11 11 H 1.09000 * 110.49043 * 119.74006 * 10 5 4 12 12 C 1.53003 * 110.49076 * 357.22164 * 10 5 4 13 13 N 1.46895 * 109.47078 * 175.00207 * 12 10 5 14 14 C 1.46902 * 110.99875 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47070 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47258 * 60.00063 * 15 14 13 17 17 C 1.53001 * 109.47247 * 299.99917 * 15 14 13 18 18 C 1.53003 * 109.46867 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.47038 * 180.02562 * 18 15 14 20 20 H 1.08006 * 120.00159 * 359.97438 * 19 18 15 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 15 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 C 1.39866 * 107.92052 * 0.27120 * 4 3 2 28 28 N 1.30846 * 108.19904 * 359.55182 * 27 4 3 29 29 H 1.09002 * 109.46963 * 89.99662 * 1 2 3 30 30 H 1.09005 * 109.46758 * 209.99088 * 1 2 3 31 31 H 1.08996 * 109.47174 * 329.98989 * 1 2 3 32 32 H 1.08008 * 126.12538 * 359.96821 * 3 2 1 33 33 H 1.09010 * 110.61614 * 78.43896 * 8 7 5 34 34 H 1.08993 * 110.61855 * 201.27647 * 8 7 5 35 35 H 1.08997 * 110.90054 * 278.82367 * 9 8 7 36 36 H 1.08999 * 110.90705 * 155.22670 * 9 8 7 37 37 H 1.08994 * 109.46754 * 54.99898 * 12 10 5 38 38 H 1.09003 * 109.46561 * 294.99918 * 12 10 5 39 39 H 1.00901 * 111.00172 * 303.94981 * 13 12 10 40 40 H 1.08996 * 109.46854 * 59.99830 * 14 13 12 41 41 H 1.09004 * 109.47013 * 299.99824 * 14 13 12 42 42 H 1.09000 * 109.47249 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.46941 * 299.99988 * 16 15 14 44 44 H 1.08996 * 109.47114 * 60.00036 * 16 15 14 45 45 H 1.08996 * 109.47108 * 300.00452 * 17 15 14 46 46 H 1.08996 * 109.47041 * 59.99958 * 17 15 14 47 47 H 1.09000 * 109.47105 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.46825 * 60.00325 * 18 15 14 49 49 H 1.08996 * 109.47396 * 299.99898 * 18 15 14 50 50 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 51 51 H 1.07997 * 125.89994 * 179.73353 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0002 6 1 4.5316 2.5102 0.4492 7 8 5.8273 0.9080 0.7337 8 6 7.0660 1.2729 0.0879 9 6 6.7191 1.2097 -1.4214 10 6 5.2676 1.7475 -1.4434 11 1 5.2544 2.8051 -1.7071 12 6 4.4127 0.9418 -2.4237 13 7 4.8303 1.2429 -3.7995 14 6 4.0297 0.4849 -4.7704 15 6 4.4932 0.8236 -6.1886 16 6 5.9694 0.4531 -6.3449 17 6 4.3143 2.3223 -6.4394 18 6 3.6598 0.0337 -7.1998 19 6 4.1168 0.3668 -8.5967 20 1 4.9209 1.0718 -8.7482 21 6 3.5076 -0.2276 -9.6814 22 7 2.5282 -1.0856 -9.4971 23 14 4.0745 0.1848 -11.4129 24 1 3.2979 1.3421 -11.9256 25 1 3.8572 -0.9880 -12.2975 26 1 5.5191 0.5283 -11.3922 27 6 3.5347 -0.7320 -0.0054 28 7 2.2892 -1.1327 0.0004 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3633 0.8899 0.5140 32 1 1.9281 2.1194 -0.0005 33 1 7.3638 2.2824 0.3714 34 1 7.8519 0.5588 0.3339 35 1 6.7593 0.1837 -1.7871 36 1 7.3814 1.8536 -2.0000 37 1 3.3638 1.2090 -2.2956 38 1 4.5429 -0.1228 -2.2292 39 1 4.7801 2.2336 -3.9841 40 1 2.9781 0.7485 -4.6587 41 1 4.1576 -0.5828 -4.5921 42 1 6.2995 0.6940 -7.3554 43 1 6.5634 1.0155 -5.6245 44 1 6.0969 -0.6146 -6.1663 45 1 3.2626 2.5863 -6.3280 46 1 4.9082 2.8847 -5.7190 47 1 4.6441 2.5635 -7.4499 48 1 2.6080 0.2973 -7.0886 49 1 3.7877 -1.0339 -7.0210 50 1 2.2341 -1.3000 -8.5979 51 1 4.4055 -1.3708 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084325859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:26 Heat of formation + Delta-G solvation = -3.211811 kcal Electronic energy + Delta-G solvation = -28110.531100 eV Core-core repulsion = 24431.141899 eV Total energy + Delta-G solvation = -3679.389201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39560 -40.32902 -39.21855 -36.30941 -34.67640 -34.19925 -32.66332 -32.09556 -29.51225 -28.60188 -27.98581 -27.64119 -26.81152 -25.44050 -23.90173 -23.47183 -22.24280 -21.76599 -20.61551 -19.81080 -18.47558 -18.01310 -17.40626 -16.90481 -16.36620 -16.18401 -16.17010 -15.82463 -15.61960 -15.40231 -15.24086 -15.09340 -14.74779 -14.24245 -14.07333 -13.74751 -13.69524 -13.67766 -13.45474 -13.25550 -13.13400 -12.87506 -12.70067 -12.55612 -12.33625 -12.26918 -12.16766 -12.04023 -11.93993 -11.73842 -11.63399 -11.47133 -11.38212 -11.09069 -10.58411 -10.50546 -10.42886 -10.39538 -9.43273 -9.19175 -8.61753 -6.29788 0.91619 1.52180 1.61729 1.65586 1.75811 1.78365 2.58865 3.06934 3.16130 3.21812 3.62718 3.76655 3.89814 3.97268 4.03248 4.09825 4.12277 4.26295 4.28799 4.37504 4.37916 4.42090 4.44379 4.58097 4.60475 4.64370 4.69715 4.73989 4.79284 4.83941 4.88534 4.95004 4.97212 5.04124 5.05790 5.11099 5.17917 5.24069 5.30368 5.35543 5.36352 5.48736 5.58680 5.62969 5.70988 5.99518 6.04600 6.14518 6.14962 6.26749 6.53322 6.65066 6.70857 7.50933 8.78131 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002951 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.391129 B = 9485.961756 C =10811.741022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.381 5.381 3 C 0.066 3.934 4 C -0.246 4.246 5 C 0.166 3.834 6 H 0.092 0.908 7 O -0.390 6.390 8 C 0.043 3.957 9 C -0.133 4.133 10 C -0.103 4.103 11 H 0.101 0.899 12 C 0.086 3.914 13 N -0.676 5.676 14 C 0.089 3.911 15 C -0.048 4.048 16 C -0.104 4.104 17 C -0.119 4.119 18 C 0.023 3.977 19 C -0.588 4.588 20 H 0.061 0.939 21 C -0.047 4.047 22 N -0.947 5.947 23 Si 1.116 2.884 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.266 1.266 27 C 0.058 3.942 28 N -0.341 5.341 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.209 0.791 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.345 0.655 40 H 0.008 0.992 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.023 0.977 45 H 0.033 0.967 46 H 0.074 0.926 47 H 0.047 0.953 48 H -0.024 1.024 49 H -0.026 1.026 50 H 0.251 0.749 51 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.461 11.205 23.589 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.258 4.258 5 C 0.107 3.893 6 H 0.110 0.890 7 O -0.310 6.310 8 C -0.033 4.033 9 C -0.171 4.171 10 C -0.122 4.122 11 H 0.120 0.880 12 C -0.043 4.043 13 N -0.308 5.308 14 C -0.041 4.041 15 C -0.049 4.049 16 C -0.161 4.161 17 C -0.176 4.176 18 C -0.014 4.014 19 C -0.626 4.626 20 H 0.079 0.921 21 C -0.243 4.243 22 N -0.586 5.586 23 Si 0.938 3.062 24 H -0.199 1.199 25 H -0.214 1.214 26 H -0.191 1.191 27 C -0.127 4.127 28 N -0.163 5.163 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.226 0.774 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.165 0.835 40 H 0.026 0.974 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.043 0.957 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.066 0.934 48 H -0.006 1.006 49 H -0.008 1.008 50 H 0.060 0.940 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.706 9.279 22.216 24.228 hybrid contribution -0.613 0.639 1.255 1.536 sum 2.093 9.918 23.471 25.566 Atomic orbital electron populations 1.22164 0.72267 1.06111 1.04129 1.48773 1.07845 1.03445 1.56200 1.22741 0.90096 0.94663 1.00627 1.20040 0.94629 0.93748 1.17357 1.20847 0.84361 0.93616 0.90472 0.88985 1.88884 1.15762 1.73078 1.53233 1.23725 0.86936 1.01567 0.91035 1.23024 0.95375 1.02056 0.96666 1.22488 0.95236 1.00861 0.93618 0.88046 1.21927 0.95912 0.99210 0.87228 1.60463 1.56508 1.12235 1.01631 1.21698 0.93265 0.97201 0.91922 1.20378 0.96229 0.96159 0.92121 1.21476 0.94788 0.99341 1.00508 1.21656 1.00022 0.94375 1.01579 1.19190 0.93499 0.93282 0.95434 1.22411 1.20400 1.27431 0.92361 0.92103 1.27372 0.94332 0.93670 1.08915 1.70892 1.28800 1.34624 1.24272 0.82945 0.76433 0.76304 0.70491 1.19894 1.21411 1.19096 1.23760 0.94682 0.95574 0.98694 1.77336 1.02540 1.10065 1.26398 0.90614 0.89281 0.86121 0.77415 0.90464 0.88431 0.92090 0.89038 0.95984 0.93159 0.83478 0.97368 0.93872 0.94264 0.90729 0.95736 0.94745 0.90728 0.93407 1.00552 1.00783 0.93981 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.47 127.77 1.47 2.64 16 2 N -0.38 -7.99 4.01 -369.55 -1.48 -9.48 16 3 C 0.07 1.16 10.62 83.54 0.89 2.05 16 4 C -0.25 -5.14 3.33 -20.14 -0.07 -5.21 16 5 C 0.17 2.92 3.88 30.22 0.12 3.04 16 6 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 7 O -0.39 -7.97 10.89 -148.98 -1.62 -9.59 16 8 C 0.04 0.65 7.72 72.67 0.56 1.21 16 9 C -0.13 -2.27 6.60 31.89 0.21 -2.06 16 10 C -0.10 -1.78 3.21 -9.81 -0.03 -1.81 16 11 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 12 C 0.09 2.05 3.81 86.31 0.33 2.38 16 13 N -0.68 -18.07 5.60 -513.89 -2.88 -20.95 16 14 C 0.09 3.16 4.65 86.30 0.40 3.56 16 15 C -0.05 -1.95 0.60 -52.18 -0.03 -1.98 16 16 C -0.10 -4.01 8.06 71.98 0.58 -3.43 16 17 C -0.12 -4.25 7.89 71.98 0.57 -3.68 16 18 C 0.02 1.24 3.35 29.85 0.10 1.34 16 19 C -0.59 -33.21 7.65 25.60 0.20 -33.01 16 20 H 0.06 3.30 5.68 -2.91 -0.02 3.28 16 21 C -0.05 -2.76 5.46 84.65 0.46 -2.29 16 22 N -0.95 -60.51 13.65 21.45 0.29 -60.22 16 23 Si 1.12 51.12 29.90 68.60 2.05 53.18 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 C 0.06 1.50 10.33 85.23 0.88 2.38 16 28 N -0.34 -9.53 12.58 -57.02 -0.72 -10.25 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.30 7.77 -2.39 -0.02 1.28 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.02 0.55 6.59 -2.39 -0.02 0.54 16 38 H 0.05 1.44 6.71 -2.39 -0.02 1.42 16 39 H 0.35 8.16 6.77 -89.69 -0.61 7.55 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 43 H 0.07 2.42 7.60 -2.39 -0.02 2.40 16 44 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 2.07 6.57 -2.39 -0.02 2.05 16 47 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 48 H -0.02 -1.37 8.01 -2.39 -0.02 -1.39 16 49 H -0.03 -1.53 8.01 -2.39 -0.02 -1.55 16 50 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 51 H 0.18 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -74.99 394.57 2.67 -72.32 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.39 Total: 19.88 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 6.63 Total: -34.89 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.79 Total: -100.90 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -1.62 Total: -9.59 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.18 kcal Total: -74.99 2.67 -72.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084325859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.111 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds