Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34938 * 126.03988 * 2 1 4 4 C 1.35316 * 107.75032 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.04044 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.42615 * 27.31511 * 5 4 3 7 7 O 1.44424 * 110.37044 * 149.62624 * 5 4 3 8 8 C 1.44426 * 105.27588 * 159.34331 * 7 5 4 9 9 C 1.54482 * 104.80616 * 319.48618 * 8 7 5 10 10 C 1.54486 * 110.37650 * 265.00670 * 5 4 3 11 11 H 1.09002 * 110.62143 * 335.89267 * 10 5 4 12 12 C 1.52990 * 110.51065 * 98.54260 * 10 5 4 13 13 N 1.46901 * 109.46964 * 181.09714 * 12 10 5 14 14 C 1.46907 * 111.00064 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47007 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47350 * 60.00124 * 15 14 13 17 17 C 1.53004 * 109.47302 * 299.99646 * 15 14 13 18 18 C 1.52998 * 109.46929 * 180.02562 * 15 14 13 19 19 C 1.50706 * 109.47348 * 179.97438 * 18 15 14 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 15 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 15 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 C 1.39871 * 107.91742 * 0.26959 * 4 3 2 28 28 N 1.30839 * 108.20283 * 359.55083 * 27 4 3 29 29 H 1.09000 * 109.47211 * 89.99791 * 1 2 3 30 30 H 1.09011 * 109.47375 * 209.99795 * 1 2 3 31 31 H 1.08998 * 109.47238 * 329.99469 * 1 2 3 32 32 H 1.08003 * 126.12597 * 0.02562 * 3 2 1 33 33 H 1.09005 * 110.37252 * 200.65910 * 8 7 5 34 34 H 1.08999 * 110.47045 * 78.36582 * 8 7 5 35 35 H 1.08994 * 110.51589 * 265.33961 * 9 8 7 36 36 H 1.08995 * 110.62780 * 142.67892 * 9 8 7 37 37 H 1.09006 * 109.46966 * 61.10359 * 12 10 5 38 38 H 1.08997 * 109.47754 * 301.09913 * 12 10 5 39 39 H 1.00902 * 111.00171 * 303.95872 * 13 12 10 40 40 H 1.09000 * 109.46801 * 60.00152 * 14 13 12 41 41 H 1.09002 * 109.46963 * 300.00066 * 14 13 12 42 42 H 1.09002 * 109.47144 * 179.97438 * 16 15 14 43 43 H 1.08995 * 109.46867 * 299.99830 * 16 15 14 44 44 H 1.08994 * 109.47054 * 59.99763 * 16 15 14 45 45 H 1.09000 * 109.47381 * 300.00659 * 17 15 14 46 46 H 1.09005 * 109.46541 * 60.00604 * 17 15 14 47 47 H 1.09001 * 109.47046 * 179.97438 * 17 15 14 48 48 H 1.09001 * 109.47671 * 60.00109 * 18 15 14 49 49 H 1.09006 * 109.47297 * 299.99829 * 18 15 14 50 50 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 51 51 H 1.07994 * 125.90002 * 179.73036 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7679 1.5452 0.0002 6 1 4.5476 2.5046 0.4683 7 8 5.8573 0.8899 0.6855 8 6 7.0539 1.5456 0.2122 9 6 6.8172 1.7556 -1.2998 10 6 5.2787 1.7554 -1.4425 11 1 4.9551 0.9383 -2.0872 12 6 4.7912 3.0968 -1.9936 13 7 5.2673 3.2613 -3.3736 14 6 4.8177 4.5416 -3.9365 15 6 5.3313 4.6762 -5.3714 16 6 4.7840 3.5261 -6.2191 17 6 6.8606 4.6277 -5.3724 18 6 4.8636 6.0099 -5.9574 19 6 5.3701 6.1429 -7.3706 20 1 5.9663 5.3551 -7.8069 21 6 5.0723 7.2701 -8.1064 22 7 4.3467 8.2297 -7.5749 23 14 5.7006 7.4352 -9.8578 24 1 5.2456 8.7291 -10.4271 25 1 7.1849 7.3886 -9.8577 26 1 5.1704 6.3189 -10.6812 27 6 3.5346 -0.7322 -0.0053 28 7 2.2891 -1.1329 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.9281 2.1192 0.0004 33 1 7.9246 0.9102 0.3753 34 1 7.1862 2.5049 0.7124 35 1 7.2539 0.9373 -1.8721 36 1 7.2307 2.7105 -1.6242 37 1 5.1803 3.9064 -1.3761 38 1 3.7015 3.1209 -1.9799 39 1 6.2717 3.1782 -3.4219 40 1 5.2073 5.3609 -3.3323 41 1 3.7282 4.5760 -3.9362 42 1 5.1496 3.6223 -7.2414 43 1 5.1175 2.5762 -5.8014 44 1 3.6946 3.5608 -6.2184 45 1 7.2506 5.4470 -4.7684 46 1 7.1941 3.6777 -4.9547 47 1 7.2265 4.7231 -6.3947 48 1 5.2539 6.8291 -5.3535 49 1 3.7741 6.0450 -5.9567 50 1 4.0207 8.1441 -6.6653 51 1 4.4053 -1.3711 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084325862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = -6.483617 kcal Electronic energy + Delta-G solvation = -27526.561671 eV Core-core repulsion = 23847.030594 eV Total energy + Delta-G solvation = -3679.531077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25468 -40.44703 -39.18618 -36.32113 -34.60232 -34.26551 -32.60860 -32.08254 -29.59783 -28.58394 -27.97782 -27.77107 -26.70393 -25.27048 -23.99521 -23.74339 -21.93563 -21.43596 -20.96173 -19.88936 -18.44896 -18.17536 -17.46184 -16.60639 -16.43703 -16.23902 -16.07014 -16.02871 -15.59423 -15.32869 -15.17772 -15.10689 -14.37963 -14.28902 -13.99186 -13.94234 -13.76762 -13.64820 -13.51553 -13.38957 -13.20504 -12.95948 -12.64844 -12.51537 -12.38108 -12.31940 -12.26439 -11.95592 -11.81962 -11.69815 -11.65132 -11.45403 -11.40266 -11.06204 -10.72886 -10.47889 -10.41999 -10.39177 -9.34223 -9.31191 -8.59070 -6.26917 0.91114 1.53404 1.61520 1.65968 1.75278 1.79695 2.59958 2.99132 3.20358 3.23715 3.61976 3.76841 3.94415 3.99225 4.03992 4.06351 4.14331 4.27289 4.28559 4.32660 4.35803 4.39747 4.42649 4.51091 4.59826 4.68266 4.69305 4.71715 4.80399 4.83046 4.86122 4.93105 4.98690 4.98940 5.07780 5.11923 5.12460 5.18627 5.32167 5.33791 5.38305 5.49650 5.60496 5.64281 5.72389 5.93729 6.03632 6.11082 6.18666 6.29321 6.51223 6.68952 6.70579 7.52579 8.81243 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.002480 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.132814 B =11287.166380 C =12334.772185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.380 5.380 3 C 0.070 3.930 4 C -0.250 4.250 5 C 0.168 3.832 6 H 0.081 0.919 7 O -0.384 6.384 8 C 0.044 3.956 9 C -0.150 4.150 10 C -0.099 4.099 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.683 5.683 14 C 0.083 3.917 15 C -0.049 4.049 16 C -0.106 4.106 17 C -0.122 4.122 18 C 0.024 3.976 19 C -0.589 4.589 20 H 0.057 0.943 21 C -0.045 4.045 22 N -0.947 5.947 23 Si 1.111 2.889 24 H -0.288 1.288 25 H -0.269 1.269 26 H -0.271 1.271 27 C 0.060 3.940 28 N -0.337 5.337 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.204 0.796 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.344 0.656 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.027 0.973 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.045 0.955 48 H -0.019 1.019 49 H -0.021 1.021 50 H 0.253 0.747 51 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -15.792 18.997 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.078 4.078 4 C -0.262 4.262 5 C 0.109 3.891 6 H 0.099 0.901 7 O -0.303 6.303 8 C -0.033 4.033 9 C -0.188 4.188 10 C -0.118 4.118 11 H 0.095 0.905 12 C -0.057 4.057 13 N -0.316 5.316 14 C -0.046 4.046 15 C -0.049 4.049 16 C -0.163 4.163 17 C -0.179 4.179 18 C -0.014 4.014 19 C -0.627 4.627 20 H 0.075 0.925 21 C -0.242 4.242 22 N -0.585 5.585 23 Si 0.933 3.067 24 H -0.214 1.214 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.125 4.125 28 N -0.159 5.159 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.134 0.866 32 H 0.221 0.779 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.088 0.912 47 H 0.064 0.936 48 H -0.001 1.001 49 H -0.003 1.003 50 H 0.062 0.938 51 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.149 -16.370 17.584 24.120 hybrid contribution 0.762 0.848 1.553 1.926 sum -1.387 -15.522 19.137 24.680 Atomic orbital electron populations 1.22193 0.72021 1.06040 1.04483 1.48794 1.07946 1.03347 1.56063 1.22678 0.90208 0.94642 1.00232 1.19891 0.94081 0.93968 1.18252 1.20932 0.84376 0.93275 0.90557 0.90078 1.89125 1.15800 1.59426 1.65985 1.23521 0.88550 0.98342 0.92869 1.23005 0.95112 1.03338 0.97322 1.22437 0.95392 0.97863 0.96109 0.90512 1.21905 1.00390 0.95335 0.88075 1.60469 1.18016 1.33479 1.19670 1.21799 0.99226 0.89440 0.94166 1.20377 0.95894 0.95115 0.93563 1.21487 0.98787 0.97429 0.98592 1.21681 0.94544 1.00321 1.01366 1.19181 0.93662 0.93026 0.95483 1.22398 1.34915 1.05835 0.99595 0.92466 1.27276 0.95154 0.92759 1.08962 1.70918 1.35739 1.35382 1.16491 0.83003 0.76574 0.76299 0.70786 1.21394 1.19417 1.19652 1.23870 0.94989 0.95204 0.98433 1.77313 1.02378 1.09820 1.26380 0.89975 0.89004 0.86629 0.77944 0.87777 0.91455 0.90107 0.90229 0.94598 0.91188 0.83551 0.96206 0.92569 0.94480 0.91334 0.95359 0.94371 0.91224 0.93636 1.00080 1.00251 0.93770 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.47 127.77 1.47 2.39 16 2 N -0.38 -7.15 4.01 -369.56 -1.48 -8.64 16 3 C 0.07 1.20 11.40 83.54 0.95 2.15 16 4 C -0.25 -5.09 5.11 -20.15 -0.10 -5.19 16 5 C 0.17 3.08 3.30 30.35 0.10 3.18 16 6 H 0.08 1.33 7.87 -2.39 -0.02 1.31 16 7 O -0.38 -7.75 11.04 -148.98 -1.64 -9.40 16 8 C 0.04 0.65 7.63 72.49 0.55 1.20 16 9 C -0.15 -2.35 6.24 31.61 0.20 -2.15 16 10 C -0.10 -1.83 2.90 -9.78 -0.03 -1.86 16 11 H 0.08 1.72 7.87 -2.39 -0.02 1.70 16 12 C 0.07 1.48 4.89 86.30 0.42 1.90 16 13 N -0.68 -17.36 5.71 -513.88 -2.94 -20.30 16 14 C 0.08 2.69 4.65 86.30 0.40 3.09 16 15 C -0.05 -1.91 0.60 -52.18 -0.03 -1.94 16 16 C -0.11 -4.03 8.07 71.98 0.58 -3.45 16 17 C -0.12 -4.30 7.89 71.98 0.57 -3.73 16 18 C 0.02 1.22 3.35 29.85 0.10 1.32 16 19 C -0.59 -32.69 7.65 25.60 0.20 -32.49 16 20 H 0.06 3.08 5.68 -2.91 -0.02 3.06 16 21 C -0.05 -2.61 5.46 84.65 0.46 -2.15 16 22 N -0.95 -59.17 13.65 21.45 0.29 -58.88 16 23 Si 1.11 50.54 29.90 68.60 2.05 52.59 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 C 0.06 1.39 11.61 85.24 0.99 2.38 16 28 N -0.34 -8.27 12.58 -57.03 -0.72 -8.98 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.19 6.98 -2.39 -0.02 1.17 16 37 H 0.04 0.69 8.14 -2.38 -0.02 0.68 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.34 8.09 5.48 -89.69 -0.49 7.60 16 40 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 43 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 44 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.96 6.57 -2.38 -0.02 1.95 16 47 H 0.04 1.79 6.62 -2.39 -0.02 1.77 16 48 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 49 H -0.02 -1.16 8.01 -2.38 -0.02 -1.17 16 50 H 0.25 16.02 7.22 -92.71 -0.67 15.35 16 51 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -72.17 398.79 2.89 -69.28 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.50 Total: 19.67 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 6.83 Total: -35.35 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -4.84 Total: -96.79 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -1.64 Total: -9.40 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -72.17 2.89 -69.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084325862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.794 kcal (2) G-P(sol) polarization free energy of solvation -72.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds