Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03218 * 2 1 4 4 C 1.35322 * 107.74325 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.03699 * 179.97438 * 4 3 2 6 6 H 1.08990 * 109.99396 * 338.91426 * 5 4 3 7 7 O 1.44053 * 109.92450 * 217.66263 * 5 4 3 8 8 C 1.44379 * 106.98316 * 214.02435 * 7 5 4 9 9 C 1.54997 * 103.48883 * 40.14145 * 8 7 5 10 10 C 1.54102 * 109.87865 * 99.99955 * 5 4 3 11 11 H 1.08994 * 110.48999 * 240.26210 * 10 5 4 12 12 C 1.53006 * 110.48571 * 2.77361 * 10 5 4 13 13 N 1.46902 * 109.46626 * 183.15556 * 12 10 5 14 14 C 1.46905 * 110.99800 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47234 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46749 * 299.99879 * 15 14 13 17 17 C 1.53001 * 109.46929 * 59.99989 * 15 14 13 18 18 C 1.52995 * 109.46860 * 179.97438 * 15 14 13 19 19 C 1.50698 * 109.46819 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00432 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99937 * 180.02562 * 19 18 15 22 22 N 1.31509 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00007 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47028 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47358 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47353 * 240.00188 * 23 21 19 27 27 C 1.39864 * 107.91986 * 0.25830 * 4 3 2 28 28 N 1.30845 * 108.20201 * 359.55523 * 27 4 3 29 29 H 1.08997 * 109.46914 * 90.01018 * 1 2 3 30 30 H 1.09001 * 109.46791 * 210.00324 * 1 2 3 31 31 H 1.08998 * 109.47753 * 330.00511 * 1 2 3 32 32 H 1.08002 * 126.13428 * 359.97438 * 3 2 1 33 33 H 1.08995 * 110.61774 * 281.64322 * 8 7 5 34 34 H 1.08996 * 110.61912 * 158.63966 * 8 7 5 35 35 H 1.08997 * 110.90808 * 204.77843 * 9 8 7 36 36 H 1.08998 * 110.93882 * 81.18889 * 9 8 7 37 37 H 1.08993 * 109.46955 * 303.15902 * 12 10 5 38 38 H 1.09000 * 109.47050 * 63.15731 * 12 10 5 39 39 H 1.00904 * 111.00423 * 303.95194 * 13 12 10 40 40 H 1.09002 * 109.47091 * 300.00139 * 14 13 12 41 41 H 1.09001 * 109.46854 * 60.00166 * 14 13 12 42 42 H 1.09001 * 109.46815 * 60.00415 * 16 15 14 43 43 H 1.09002 * 109.46581 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47272 * 300.00105 * 16 15 14 45 45 H 1.08994 * 109.46910 * 60.00100 * 17 15 14 46 46 H 1.09002 * 109.46495 * 180.02562 * 17 15 14 47 47 H 1.09001 * 109.47163 * 299.99914 * 17 15 14 48 48 H 1.08994 * 109.47497 * 300.00218 * 18 15 14 49 49 H 1.09004 * 109.47471 * 60.00183 * 18 15 14 50 50 H 0.96994 * 120.00350 * 180.02562 * 22 21 19 51 51 H 1.08003 * 125.90460 * 179.73991 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5455 -0.0013 6 1 4.5131 2.5391 -0.3698 7 8 5.7915 0.9607 -0.8292 8 6 7.0608 1.2844 -0.2223 9 6 6.7896 1.1165 1.2945 10 6 5.3410 1.6469 1.4255 11 1 5.3432 2.6832 1.7631 12 6 4.5359 0.7729 2.3894 13 7 5.0528 0.9442 3.7537 14 6 4.3023 0.1177 4.7086 15 6 4.8679 0.3230 6.1154 16 6 6.3424 -0.0847 6.1366 17 6 4.7405 1.7967 6.5062 18 6 4.0859 -0.5373 7.1099 19 6 4.6433 -0.3356 8.4954 20 1 5.4722 0.3390 8.6511 21 6 4.0952 -1.0125 9.5643 22 7 3.0863 -1.8344 9.3748 23 14 4.7857 -0.7619 11.2818 24 1 5.9106 0.2060 11.2267 25 1 3.7206 -0.2335 12.1714 26 1 5.2755 -2.0594 11.8126 27 6 3.5347 -0.7320 -0.0069 28 7 2.2891 -1.1327 -0.0004 29 1 -0.3633 -0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9280 2.1194 -0.0004 33 1 7.3443 2.3119 -0.4500 34 1 7.8328 0.5898 -0.5532 35 1 7.4799 1.7214 1.8824 36 1 6.8480 0.0682 1.5870 37 1 3.4873 1.0686 2.3582 38 1 4.6275 -0.2725 2.0947 39 1 6.0397 0.7381 3.7951 40 1 3.2519 0.4085 4.6937 41 1 4.3928 -0.9321 4.4299 42 1 6.8992 0.5286 5.4281 43 1 6.7452 0.0611 7.1390 44 1 6.4331 -1.1346 5.8582 45 1 3.6900 2.0871 6.4910 46 1 5.1438 1.9430 7.5082 47 1 5.2973 2.4100 5.7977 48 1 3.0356 -0.2466 7.0946 49 1 4.1762 -1.5874 6.8316 50 1 2.7004 -2.3102 10.1267 51 1 4.4054 -1.3709 -0.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084325867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = 21.815006 kcal Electronic energy + Delta-G solvation = -28064.056200 eV Core-core repulsion = 24385.752244 eV Total energy + Delta-G solvation = -3678.303956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55190 -39.51832 -37.54802 -34.87673 -33.50622 -32.51224 -31.48090 -31.23432 -28.74481 -27.08238 -26.56183 -26.30500 -25.64328 -23.96548 -22.83412 -22.07906 -21.39366 -20.84435 -19.62367 -17.84297 -17.17525 -16.67951 -16.22317 -15.62105 -15.57500 -15.33415 -15.14249 -14.69085 -14.44126 -14.08904 -13.79995 -13.51924 -13.30776 -13.06939 -12.95829 -12.77202 -12.60421 -12.52444 -12.42586 -11.98600 -11.69609 -11.50127 -11.35143 -11.05697 -10.96817 -10.94043 -10.75898 -10.72302 -10.58803 -10.46983 -10.22783 -10.07739 -9.83679 -9.65944 -9.51474 -8.98688 -8.79073 -8.48554 -8.30354 -7.99832 -5.94499 -3.94547 1.74306 2.38267 2.63923 3.33237 3.41021 3.44491 3.81385 4.28413 4.36393 4.49533 4.53971 4.64816 4.69372 4.91316 4.96425 5.00227 5.09038 5.16154 5.20262 5.25034 5.38371 5.41302 5.48214 5.60699 5.68300 5.71940 5.76610 5.81150 5.86874 5.96799 5.99995 6.04293 6.14833 6.31193 6.37985 6.51441 6.54478 6.68769 6.75405 6.82051 6.85112 6.86013 7.23698 7.26823 7.28867 7.46080 7.58864 7.72070 7.76403 7.88791 8.06118 8.50634 9.11222 9.68174 11.17253 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002934 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.816174 B = 9541.444062 C =10876.501110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.062 3.938 4 C -0.232 4.232 5 C 0.163 3.837 6 H 0.073 0.927 7 O -0.370 6.370 8 C 0.046 3.954 9 C -0.152 4.152 10 C -0.111 4.111 11 H 0.092 0.908 12 C 0.077 3.923 13 N -0.688 5.688 14 C 0.073 3.927 15 C -0.058 4.058 16 C -0.128 4.128 17 C -0.115 4.115 18 C 0.033 3.967 19 C -0.505 4.505 20 H 0.060 0.940 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.887 3.113 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.074 3.926 28 N -0.297 5.297 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.173 0.827 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.336 0.664 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.053 0.947 47 H 0.042 0.958 48 H 0.014 0.986 49 H 0.012 0.988 50 H 0.258 0.742 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 8.427 -22.437 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.084 4.084 4 C -0.244 4.244 5 C 0.103 3.897 6 H 0.091 0.909 7 O -0.289 6.289 8 C -0.030 4.030 9 C -0.190 4.190 10 C -0.130 4.130 11 H 0.110 0.890 12 C -0.052 4.052 13 N -0.320 5.320 14 C -0.056 4.056 15 C -0.059 4.059 16 C -0.185 4.185 17 C -0.172 4.172 18 C -0.004 4.004 19 C -0.544 4.544 20 H 0.078 0.922 21 C -0.146 4.146 22 N -0.538 5.538 23 Si 0.715 3.285 24 H -0.198 1.198 25 H -0.212 1.212 26 H -0.212 1.212 27 C -0.112 4.112 28 N -0.118 5.118 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.190 0.810 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.154 0.846 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.032 0.968 49 H 0.030 0.970 50 H 0.068 0.932 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.063 7.737 -22.411 23.709 hybrid contribution 1.051 -0.068 1.046 1.485 sum 0.988 7.670 -21.365 22.721 Atomic orbital electron populations 1.21856 0.74149 1.04741 1.03184 1.48428 1.06649 1.03763 1.56929 1.22166 0.90565 0.93489 1.02223 1.19780 0.93429 0.94289 1.16864 1.20838 0.85527 0.93861 0.89432 0.90944 1.88956 1.14654 1.76588 1.48704 1.23525 0.86993 1.00496 0.92009 1.23230 0.96582 1.02429 0.96752 1.22566 0.94461 1.01464 0.94514 0.88997 1.21991 0.98607 0.96785 0.87859 1.60613 1.07674 1.59139 1.04570 1.22051 0.97606 0.93431 0.92489 1.20624 0.95444 0.96980 0.92819 1.21759 0.96243 0.99118 1.01415 1.21585 1.00235 0.95076 1.00291 1.19122 0.94742 0.93925 0.92616 1.21282 1.16198 1.24762 0.92132 0.92232 1.25023 0.95176 0.95488 0.98957 1.69976 1.24337 1.28546 1.30906 0.86613 0.78975 0.77848 0.85033 1.19765 1.21171 1.21200 1.23631 0.94896 0.94383 0.98328 1.77423 1.01666 1.08088 1.24660 0.90855 0.89172 0.89428 0.80973 0.92218 0.89110 0.89907 0.90614 0.91314 0.95203 0.84556 0.91964 0.96096 0.94842 0.91747 0.94162 0.94307 0.92755 0.93908 0.96794 0.96969 0.93244 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.47 59.85 0.69 1.39 16 2 N -0.38 -4.10 4.01 -68.16 -0.27 -4.37 16 3 C 0.06 0.61 10.96 -17.22 -0.19 0.42 16 4 C -0.23 -2.57 3.31 -105.05 -0.35 -2.92 16 5 C 0.16 1.63 3.89 -27.31 -0.11 1.52 16 6 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 7 O -0.37 -4.06 10.96 -35.23 -0.39 -4.44 16 8 C 0.05 0.39 7.72 38.21 0.29 0.68 16 9 C -0.15 -1.36 5.95 -24.72 -0.15 -1.51 16 10 C -0.11 -1.12 3.28 -89.09 -0.29 -1.41 16 11 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 12 C 0.08 0.98 3.83 -3.82 -0.01 0.96 16 13 N -0.69 -10.02 5.71 -113.77 -0.65 -10.67 16 14 C 0.07 1.31 4.65 -3.82 -0.02 1.29 16 15 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 16 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 17 C -0.11 -2.24 8.06 37.16 0.30 -1.94 16 18 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 19 C -0.51 -13.96 7.65 -34.44 -0.26 -14.22 16 20 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 23 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.07 0.93 9.99 -17.36 -0.17 0.76 16 28 N -0.30 -4.06 12.58 30.63 0.39 -3.68 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 37 H 0.07 0.95 6.94 -51.93 -0.36 0.59 16 38 H 0.03 0.41 6.41 -51.93 -0.33 0.08 16 39 H 0.34 4.65 6.05 -39.29 -0.24 4.42 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 43 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 47 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 48 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.18 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -32.79 394.85 -8.50 -41.29 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.96 Total: 1.77 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.28 Total: -16.16 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.20 Total: -45.12 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.39 Total: -4.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.79 -8.50 -41.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084325867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.106 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds