Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03218 * 2 1 4 4 C 1.35322 * 107.74325 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.03699 * 179.97438 * 4 3 2 6 6 H 1.08990 * 109.99396 * 338.91426 * 5 4 3 7 7 O 1.44053 * 109.92450 * 217.66263 * 5 4 3 8 8 C 1.44379 * 106.98316 * 214.02435 * 7 5 4 9 9 C 1.54997 * 103.48883 * 40.14145 * 8 7 5 10 10 C 1.54102 * 109.87865 * 99.99955 * 5 4 3 11 11 H 1.08994 * 110.48999 * 240.26210 * 10 5 4 12 12 C 1.53006 * 110.48571 * 2.77361 * 10 5 4 13 13 N 1.46902 * 109.46626 * 183.15556 * 12 10 5 14 14 C 1.46905 * 110.99800 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47234 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.46749 * 299.99879 * 15 14 13 17 17 C 1.53001 * 109.46929 * 59.99989 * 15 14 13 18 18 C 1.52995 * 109.46860 * 179.97438 * 15 14 13 19 19 C 1.50698 * 109.46819 * 179.97438 * 18 15 14 20 20 H 1.07997 * 120.00432 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99937 * 180.02562 * 19 18 15 22 22 N 1.31509 * 120.00238 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00007 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47028 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47358 * 119.99669 * 23 21 19 26 26 H 1.48498 * 109.47353 * 240.00188 * 23 21 19 27 27 C 1.39864 * 107.91986 * 0.25830 * 4 3 2 28 28 N 1.30845 * 108.20201 * 359.55523 * 27 4 3 29 29 H 1.08997 * 109.46914 * 90.01018 * 1 2 3 30 30 H 1.09001 * 109.46791 * 210.00324 * 1 2 3 31 31 H 1.08998 * 109.47753 * 330.00511 * 1 2 3 32 32 H 1.08002 * 126.13428 * 359.97438 * 3 2 1 33 33 H 1.08995 * 110.61774 * 281.64322 * 8 7 5 34 34 H 1.08996 * 110.61912 * 158.63966 * 8 7 5 35 35 H 1.08997 * 110.90808 * 204.77843 * 9 8 7 36 36 H 1.08998 * 110.93882 * 81.18889 * 9 8 7 37 37 H 1.08993 * 109.46955 * 303.15902 * 12 10 5 38 38 H 1.09000 * 109.47050 * 63.15731 * 12 10 5 39 39 H 1.00904 * 111.00423 * 303.95194 * 13 12 10 40 40 H 1.09002 * 109.47091 * 300.00139 * 14 13 12 41 41 H 1.09001 * 109.46854 * 60.00166 * 14 13 12 42 42 H 1.09001 * 109.46815 * 60.00415 * 16 15 14 43 43 H 1.09002 * 109.46581 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47272 * 300.00105 * 16 15 14 45 45 H 1.08994 * 109.46910 * 60.00100 * 17 15 14 46 46 H 1.09002 * 109.46495 * 180.02562 * 17 15 14 47 47 H 1.09001 * 109.47163 * 299.99914 * 17 15 14 48 48 H 1.08994 * 109.47497 * 300.00218 * 18 15 14 49 49 H 1.09004 * 109.47471 * 60.00183 * 18 15 14 50 50 H 0.96994 * 120.00350 * 180.02562 * 22 21 19 51 51 H 1.08003 * 125.90460 * 179.73991 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 6 4.7679 1.5455 -0.0013 6 1 4.5131 2.5391 -0.3698 7 8 5.7915 0.9607 -0.8292 8 6 7.0608 1.2844 -0.2223 9 6 6.7896 1.1165 1.2945 10 6 5.3410 1.6469 1.4255 11 1 5.3432 2.6832 1.7631 12 6 4.5359 0.7729 2.3894 13 7 5.0528 0.9442 3.7537 14 6 4.3023 0.1177 4.7086 15 6 4.8679 0.3230 6.1154 16 6 6.3424 -0.0847 6.1366 17 6 4.7405 1.7967 6.5062 18 6 4.0859 -0.5373 7.1099 19 6 4.6433 -0.3356 8.4954 20 1 5.4722 0.3390 8.6511 21 6 4.0952 -1.0125 9.5643 22 7 3.0863 -1.8344 9.3748 23 14 4.7857 -0.7619 11.2818 24 1 5.9106 0.2060 11.2267 25 1 3.7206 -0.2335 12.1714 26 1 5.2755 -2.0594 11.8126 27 6 3.5347 -0.7320 -0.0069 28 7 2.2891 -1.1327 -0.0004 29 1 -0.3633 -0.0002 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9280 2.1194 -0.0004 33 1 7.3443 2.3119 -0.4500 34 1 7.8328 0.5898 -0.5532 35 1 7.4799 1.7214 1.8824 36 1 6.8480 0.0682 1.5870 37 1 3.4873 1.0686 2.3582 38 1 4.6275 -0.2725 2.0947 39 1 6.0397 0.7381 3.7951 40 1 3.2519 0.4085 4.6937 41 1 4.3928 -0.9321 4.4299 42 1 6.8992 0.5286 5.4281 43 1 6.7452 0.0611 7.1390 44 1 6.4331 -1.1346 5.8582 45 1 3.6900 2.0871 6.4910 46 1 5.1438 1.9430 7.5082 47 1 5.2973 2.4100 5.7977 48 1 3.0356 -0.2466 7.0946 49 1 4.1762 -1.5874 6.8316 50 1 2.7004 -2.3102 10.1267 51 1 4.4054 -1.3709 -0.0129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084325867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = 0.564182 kcal Electronic energy + Delta-G solvation = -28064.977705 eV Core-core repulsion = 24385.752244 eV Total energy + Delta-G solvation = -3679.225461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36317 -40.31788 -39.07728 -36.16499 -34.53126 -34.15617 -32.62534 -32.07375 -29.57315 -28.95347 -27.89308 -27.55318 -26.78962 -25.47773 -23.78257 -23.54082 -22.17164 -21.69103 -20.48777 -19.46554 -18.34821 -17.98524 -17.48247 -16.63909 -16.59410 -16.32215 -16.25881 -15.89954 -15.53282 -15.30481 -15.22790 -14.82683 -14.33206 -14.12511 -13.98890 -13.95775 -13.78580 -13.70126 -13.44382 -13.24549 -13.21950 -12.79554 -12.67997 -12.49084 -12.28040 -12.25706 -12.22005 -12.06819 -11.91922 -11.80126 -11.65699 -11.42834 -11.35814 -10.87126 -10.73687 -10.53910 -10.52542 -10.36833 -9.34991 -9.21489 -8.14780 -6.22325 0.95429 1.40105 1.40752 1.53357 1.69387 1.77537 2.43232 3.10347 3.19142 3.23130 3.62884 3.73952 3.94925 4.01056 4.11408 4.15801 4.23260 4.30132 4.36931 4.40340 4.42164 4.43684 4.45469 4.57990 4.68138 4.68872 4.77520 4.79690 4.88686 4.92809 4.96063 4.99584 5.03962 5.08161 5.15403 5.19812 5.21723 5.21898 5.32270 5.50671 5.52955 5.58298 5.65102 5.65918 5.86429 5.91732 6.06014 6.08936 6.17261 6.35573 6.56735 6.73820 6.93220 7.45338 8.98032 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002934 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.816174 B = 9541.444062 C =10876.501110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.380 5.380 3 C 0.068 3.932 4 C -0.247 4.247 5 C 0.167 3.833 6 H 0.093 0.907 7 O -0.392 6.392 8 C 0.046 3.954 9 C -0.150 4.150 10 C -0.103 4.103 11 H 0.103 0.897 12 C 0.085 3.915 13 N -0.677 5.677 14 C 0.087 3.913 15 C -0.055 4.055 16 C -0.121 4.121 17 C -0.104 4.104 18 C 0.040 3.960 19 C -0.512 4.512 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.940 5.940 23 Si 0.958 3.042 24 H -0.258 1.258 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.059 3.941 28 N -0.342 5.342 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.210 0.790 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.343 0.657 40 H 0.048 0.952 41 H 0.005 0.995 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.040 0.960 47 H 0.071 0.929 48 H -0.019 1.019 49 H -0.021 1.021 50 H 0.259 0.741 51 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 11.121 -23.011 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 C -0.079 4.079 4 C -0.259 4.259 5 C 0.107 3.893 6 H 0.110 0.890 7 O -0.311 6.311 8 C -0.030 4.030 9 C -0.188 4.188 10 C -0.122 4.122 11 H 0.121 0.879 12 C -0.044 4.044 13 N -0.309 5.309 14 C -0.042 4.042 15 C -0.055 4.055 16 C -0.178 4.178 17 C -0.162 4.162 18 C 0.002 3.998 19 C -0.550 4.550 20 H 0.087 0.913 21 C -0.203 4.203 22 N -0.581 5.581 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.126 4.126 28 N -0.164 5.164 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.227 0.773 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.163 0.837 40 H 0.066 0.934 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.090 0.910 48 H -0.001 1.001 49 H -0.003 1.003 50 H 0.068 0.932 51 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.419 10.439 -23.000 25.298 hybrid contribution 0.522 -0.929 1.162 1.577 sum 1.941 9.510 -21.838 23.898 Atomic orbital electron populations 1.22166 0.72228 1.05664 1.04621 1.48767 1.07862 1.03410 1.56207 1.22780 0.90084 0.94699 1.00355 1.20024 0.94648 0.93673 1.17540 1.20892 0.84904 0.94314 0.89146 0.88977 1.88943 1.15754 1.77115 1.49305 1.23668 0.86258 1.01817 0.91247 1.23224 0.96074 1.01901 0.97602 1.22498 0.94639 1.01221 0.93840 0.87875 1.21930 0.98528 0.96710 0.87199 1.60563 1.07758 1.57615 1.04961 1.21724 0.97185 0.93110 0.92215 1.20494 0.95857 0.96585 0.92591 1.21675 0.95103 0.99469 1.01583 1.21482 0.99968 0.94494 1.00220 1.19009 0.93725 0.93010 0.94047 1.21650 1.16094 1.24356 0.92923 0.91312 1.25963 0.95510 0.95245 1.03558 1.70126 1.25965 1.29813 1.32244 0.85490 0.78578 0.78038 0.79532 1.18190 1.20817 1.20885 1.23723 0.94673 0.95524 0.98704 1.77332 1.02526 1.10125 1.26425 0.89142 0.90022 0.86765 0.77313 0.90418 0.88262 0.88386 0.91846 0.92424 0.96638 0.83694 0.93388 0.97674 0.91082 0.93221 0.94871 0.95305 0.94140 0.90991 1.00087 1.00286 0.93193 0.80775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.47 127.77 1.47 2.65 16 2 N -0.38 -8.09 4.01 -369.56 -1.48 -9.57 16 3 C 0.07 1.22 10.96 83.54 0.92 2.14 16 4 C -0.25 -5.25 3.31 -20.14 -0.07 -5.32 16 5 C 0.17 2.98 3.89 30.22 0.12 3.10 16 6 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 7 O -0.39 -7.93 10.96 -148.98 -1.63 -9.56 16 8 C 0.05 0.66 7.72 72.67 0.56 1.22 16 9 C -0.15 -2.32 5.95 31.90 0.19 -2.13 16 10 C -0.10 -1.82 3.28 -9.80 -0.03 -1.86 16 11 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 12 C 0.09 2.08 3.83 86.31 0.33 2.41 16 13 N -0.68 -18.60 5.71 -513.86 -2.94 -21.54 16 14 C 0.09 3.16 4.65 86.30 0.40 3.56 16 15 C -0.05 -2.22 0.60 -52.18 -0.03 -2.25 16 16 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 17 C -0.10 -3.95 8.06 71.98 0.58 -3.37 16 18 C 0.04 2.11 4.04 29.85 0.12 2.24 16 19 C -0.51 -28.68 7.65 25.60 0.20 -28.48 16 20 H 0.07 3.66 5.68 -2.91 -0.02 3.65 16 21 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 22 N -0.94 -58.44 13.29 21.45 0.28 -58.16 16 23 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 C 0.06 1.54 9.99 85.23 0.85 2.39 16 28 N -0.34 -9.65 12.58 -57.02 -0.72 -10.37 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.21 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.14 7.80 -2.39 -0.02 1.13 16 37 H 0.06 1.55 6.94 -2.39 -0.02 1.53 16 38 H 0.02 0.43 6.41 -2.39 -0.02 0.42 16 39 H 0.34 8.64 6.05 -89.69 -0.54 8.10 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.07 2.03 6.57 -2.39 -0.02 2.02 16 43 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 47 H 0.07 2.29 7.60 -2.39 -0.02 2.28 16 48 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 49 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 50 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 51 H 0.18 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -73.40 394.85 2.53 -70.88 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.36 Total: 18.99 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 6.63 Total: -27.44 kcal Atomic # 7 Polarization: -94.79 SS G_CDS: -4.85 Total: -99.64 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.63 Total: -9.56 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -73.40 2.53 -70.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084325867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.441 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds