Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36889 * 119.70349 * 2 1 4 4 C 1.35148 * 119.66355 * 180.02562 * 3 2 1 5 5 I 2.09497 * 120.44462 * 179.97438 * 4 3 2 6 6 C 1.41471 * 119.11004 * 359.97438 * 4 3 2 7 7 O 1.21804 * 120.29960 * 179.97438 * 6 4 3 8 8 N 1.34835 * 119.40753 * 0.02562 * 6 4 3 9 9 C 1.37286 * 119.85780 * 179.97438 * 8 6 4 10 10 H 1.08001 * 120.00121 * 138.63328 * 9 8 6 11 11 C 1.39000 * 119.99992 * 318.63104 * 9 8 6 12 12 N 1.31323 * 120.00161 * 340.19476 * 11 9 8 13 13 Si 1.86797 * 119.99940 * 160.19761 * 11 9 8 14 14 H 1.48499 * 109.47235 * 94.77341 * 13 11 9 15 15 H 1.48504 * 109.46933 * 214.77530 * 13 11 9 16 16 H 1.48500 * 109.47128 * 334.77275 * 13 11 9 17 17 C 1.34549 * 119.69720 * 179.72993 * 2 1 3 18 18 O 1.21580 * 119.53393 * 359.97438 * 17 2 1 19 19 H 1.09005 * 109.46586 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47288 * 240.00112 * 1 2 3 21 21 H 1.08996 * 109.47255 * 119.99947 * 1 2 3 22 22 H 1.08001 * 120.16996 * 359.97438 * 3 2 1 23 23 H 0.96994 * 119.99964 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1433 1.1890 0.0000 4 6 3.4948 1.1881 -0.0005 5 53 4.5576 2.9935 -0.0013 6 6 4.1822 -0.0484 -0.0005 7 8 5.4000 -0.0745 -0.0015 8 7 3.4772 -1.1978 -0.0005 9 6 4.1348 -2.4029 -0.0010 10 1 3.7776 -3.2133 0.6170 11 6 5.2605 -2.5801 -0.7971 12 7 5.4770 -1.7799 -1.8156 13 14 6.4651 -3.9565 -0.4182 14 1 6.1284 -5.1485 -1.2373 15 1 7.8445 -3.5092 -0.7385 16 1 6.3802 -4.3060 1.0226 17 6 2.1316 -1.1688 0.0055 18 8 1.5096 -2.2134 0.0109 19 1 -0.3633 1.0277 -0.0005 20 1 -0.3633 -0.5138 0.8899 21 1 -0.3633 -0.5138 -0.8899 22 1 1.6013 2.1231 -0.0004 23 1 6.2626 -1.9033 -2.3708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095977948.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -3.025716 kcal Electronic energy + Delta-G solvation = -14172.748672 eV Core-core repulsion = 11461.172403 eV Total energy + Delta-G solvation = -2711.576269 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 321.960 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15597 -37.70002 -36.38018 -33.98151 -32.53933 -31.61097 -28.13416 -26.40354 -25.57380 -22.99645 -21.74965 -18.35007 -18.20384 -16.27839 -16.02308 -15.51805 -14.86945 -13.95008 -13.90279 -13.55084 -12.76712 -12.61977 -12.47695 -11.84220 -11.57943 -11.24904 -11.00778 -10.68907 -10.37077 -9.69002 -9.66379 -9.37931 -9.21944 -8.73557 -7.96853 -7.67172 -6.48296 -4.26607 1.58036 1.66098 3.04247 3.13510 3.23891 3.30340 3.36279 4.09927 4.55038 4.68689 4.81436 5.14390 5.20966 5.52492 5.62384 5.76108 6.21798 6.66150 7.07467 7.42189 7.91046 8.18650 8.71619 8.93459 9.23921 9.69501 10.61347 Molecular weight = 321.96amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.008391 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.689773 B = 3336.140865 C = 4678.509942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.534 5.534 3 C 0.168 3.832 4 C -0.263 4.263 5 I -0.009 7.009 6 C 0.521 3.479 7 O -0.486 6.486 8 N -0.369 5.369 9 C -0.347 4.347 10 H 0.104 0.896 11 C 0.075 3.925 12 N -0.813 5.813 13 Si 0.933 3.067 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.265 1.265 17 C 0.643 3.357 18 O -0.561 6.561 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.162 0.838 23 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.151 12.658 2.688 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.254 5.254 3 C 0.037 3.963 4 C -0.414 4.414 5 I 0.135 6.865 6 C 0.314 3.686 7 O -0.360 6.360 8 N -0.098 5.098 9 C -0.473 4.473 10 H 0.122 0.878 11 C -0.139 4.139 12 N -0.444 5.444 13 Si 0.758 3.242 14 H -0.203 1.203 15 H -0.203 1.203 16 H -0.189 1.189 17 C 0.349 3.651 18 O -0.438 6.438 19 H 0.101 0.899 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.179 0.821 23 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.030 13.170 2.515 14.321 hybrid contribution -0.217 -1.496 -0.071 1.514 sum -5.247 11.674 2.444 13.030 Atomic orbital electron populations 1.21858 0.76488 1.02949 1.04049 1.45002 1.08455 1.04899 1.67007 1.21871 0.92039 0.89703 0.92651 1.25265 0.94806 0.97410 1.23909 1.96334 1.76543 1.14575 1.99007 1.16422 0.88372 0.82729 0.81045 1.90732 1.12361 1.86233 1.46667 1.41947 1.02481 1.08696 1.56724 1.19386 1.10240 0.90015 1.27709 0.87842 1.25362 0.98105 0.97703 0.92717 1.69855 1.26267 1.36223 1.12015 0.85862 0.79380 0.79574 0.79414 1.20257 1.20312 1.18905 1.16744 0.83719 0.82813 0.81778 1.90827 1.66536 1.29804 1.56648 0.89875 0.90678 0.90624 0.82103 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 10.05 59.85 0.60 1.72 14 2 N -0.53 -9.73 3.01 -128.92 -0.39 -10.12 14 3 C 0.17 2.77 10.10 -16.39 -0.17 2.60 14 4 C -0.26 -5.34 6.21 -39.45 -0.25 -5.58 14 5 I -0.01 -0.15 39.75 -73.02 -2.90 -3.06 14 6 C 0.52 13.51 6.73 -15.00 -0.10 13.41 14 7 O -0.49 -13.91 13.96 5.10 0.07 -13.84 14 8 N -0.37 -10.03 2.63 -68.66 -0.18 -10.21 14 9 C -0.35 -10.03 8.61 -14.83 -0.13 -10.16 14 10 H 0.10 2.96 7.81 -52.49 -0.41 2.55 14 11 C 0.08 2.11 4.33 -17.49 -0.08 2.04 14 12 N -0.81 -23.77 11.58 55.50 0.64 -23.13 14 13 Si 0.93 21.76 29.60 -169.99 -5.03 16.72 14 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 14 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 14 16 H -0.26 -6.05 7.11 56.52 0.40 -5.65 14 17 C 0.64 15.64 8.07 -87.29 -0.70 14.94 14 18 O -0.56 -14.80 16.13 5.30 0.09 -14.71 14 19 H 0.08 0.66 7.76 -51.93 -0.40 0.26 14 20 H 0.07 0.92 8.14 -51.93 -0.42 0.49 14 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 14 22 H 0.16 1.82 7.87 -52.49 -0.41 1.41 14 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 14 LS Contribution 240.11 15.07 3.62 3.62 Total: -1.00 -34.67 240.11 -6.11 -40.78 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: -1.21 Total: -5.02 kcal Atomic # 6 Polarization: 19.79 SS G_CDS: -0.82 Total: 18.97 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.07 Total: -43.45 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: 0.16 Total: -28.56 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 53 Polarization: -0.15 SS G_CDS: -2.90 Total: -3.06 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -34.67 -6.11 -40.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095977948.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.757 kcal (2) G-P(sol) polarization free energy of solvation -34.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds