Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36889 * 119.70349 * 2 1 4 4 C 1.35148 * 119.66355 * 180.02562 * 3 2 1 5 5 I 2.09497 * 120.44462 * 179.97438 * 4 3 2 6 6 C 1.41471 * 119.11004 * 359.97438 * 4 3 2 7 7 O 1.21804 * 120.29960 * 179.97438 * 6 4 3 8 8 N 1.34835 * 119.40753 * 0.02562 * 6 4 3 9 9 C 1.37286 * 119.85780 * 179.97438 * 8 6 4 10 10 H 1.08001 * 120.00121 * 138.63328 * 9 8 6 11 11 C 1.39000 * 119.99992 * 318.63104 * 9 8 6 12 12 N 1.31323 * 120.00161 * 340.19476 * 11 9 8 13 13 Si 1.86797 * 119.99940 * 160.19761 * 11 9 8 14 14 H 1.48499 * 109.47235 * 94.77341 * 13 11 9 15 15 H 1.48504 * 109.46933 * 214.77530 * 13 11 9 16 16 H 1.48500 * 109.47128 * 334.77275 * 13 11 9 17 17 C 1.34549 * 119.69720 * 179.72993 * 2 1 3 18 18 O 1.21580 * 119.53393 * 359.97438 * 17 2 1 19 19 H 1.09005 * 109.46586 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47288 * 240.00112 * 1 2 3 21 21 H 1.08996 * 109.47255 * 119.99947 * 1 2 3 22 22 H 1.08001 * 120.16996 * 359.97438 * 3 2 1 23 23 H 0.96994 * 119.99964 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1433 1.1890 0.0000 4 6 3.4948 1.1881 -0.0005 5 53 4.5576 2.9935 -0.0013 6 6 4.1822 -0.0484 -0.0005 7 8 5.4000 -0.0745 -0.0015 8 7 3.4772 -1.1978 -0.0005 9 6 4.1348 -2.4029 -0.0010 10 1 3.7776 -3.2133 0.6170 11 6 5.2605 -2.5801 -0.7971 12 7 5.4770 -1.7799 -1.8156 13 14 6.4651 -3.9565 -0.4182 14 1 6.1284 -5.1485 -1.2373 15 1 7.8445 -3.5092 -0.7385 16 1 6.3802 -4.3060 1.0226 17 6 2.1316 -1.1688 0.0055 18 8 1.5096 -2.2134 0.0109 19 1 -0.3633 1.0277 -0.0005 20 1 -0.3633 -0.5138 0.8899 21 1 -0.3633 -0.5138 -0.8899 22 1 1.6013 2.1231 -0.0004 23 1 6.2626 -1.9033 -2.3708 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095977948.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -27.492046 kcal Electronic energy + Delta-G solvation = -14173.809612 eV Core-core repulsion = 11461.172403 eV Total energy + Delta-G solvation = -2712.637208 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 321.960 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.92703 -39.56830 -38.10165 -35.98238 -34.31993 -33.38709 -29.55202 -28.09465 -27.22941 -24.81398 -23.50338 -20.23055 -19.96992 -18.00137 -17.77222 -17.20343 -16.74794 -15.80076 -15.70362 -15.18036 -14.50669 -14.25401 -13.77888 -13.65716 -13.13070 -12.91537 -12.79546 -12.42154 -12.21162 -11.58601 -11.24118 -11.12056 -10.78112 -10.71477 -9.97639 -9.27691 -8.56064 -6.43629 0.10961 0.17682 1.25368 1.33336 1.39578 1.47759 1.61103 2.22772 2.67920 2.81902 3.20660 3.59479 4.05570 4.28998 4.51670 4.58156 4.82504 5.22615 5.30004 5.44873 5.86456 6.25857 6.68795 6.96690 7.30104 7.73230 8.54947 Molecular weight = 321.96amu Principal moments of inertia in cm(-1) A = 0.018817 B = 0.008391 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.689773 B = 3336.140865 C = 4678.509942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.527 5.527 3 C 0.216 3.784 4 C -0.313 4.313 5 I 0.031 6.969 6 C 0.514 3.486 7 O -0.530 6.530 8 N -0.396 5.396 9 C -0.387 4.387 10 H 0.088 0.912 11 C 0.035 3.965 12 N -0.851 5.851 13 Si 0.994 3.006 14 H -0.261 1.261 15 H -0.275 1.275 16 H -0.261 1.261 17 C 0.638 3.362 18 O -0.593 6.593 19 H 0.146 0.854 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.230 0.770 23 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 14.639 2.950 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.245 5.245 3 C 0.085 3.915 4 C -0.461 4.461 5 I 0.174 6.826 6 C 0.309 3.691 7 O -0.407 6.407 8 N -0.126 5.126 9 C -0.513 4.513 10 H 0.106 0.894 11 C -0.175 4.175 12 N -0.483 5.483 13 Si 0.815 3.185 14 H -0.186 1.186 15 H -0.200 1.200 16 H -0.185 1.185 17 C 0.344 3.656 18 O -0.472 6.472 19 H 0.164 0.836 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.246 0.754 23 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.634 15.164 2.780 16.784 hybrid contribution 0.092 -1.967 -0.111 1.973 sum -6.543 13.197 2.668 14.969 Atomic orbital electron populations 1.22386 0.72518 1.07147 1.04185 1.45183 1.10677 1.03592 1.65047 1.22759 0.91118 0.90837 0.86762 1.25281 0.96494 0.97046 1.27289 1.96286 1.77031 1.10162 1.99078 1.17204 0.88365 0.83929 0.79568 1.90679 1.14148 1.87047 1.48790 1.42202 1.03830 1.08878 1.57691 1.19421 1.12028 0.90982 1.28853 0.89395 1.26244 0.99208 0.99988 0.92095 1.69923 1.26878 1.38383 1.13115 0.84963 0.76931 0.77120 0.79465 1.18621 1.20001 1.18547 1.16924 0.83093 0.84411 0.81214 1.90786 1.66991 1.31613 1.57807 0.83626 0.90337 0.90901 0.75366 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.61 10.05 127.77 1.28 2.90 14 2 N -0.53 -17.71 3.01 -680.19 -2.05 -19.76 14 3 C 0.22 6.23 10.10 83.19 0.84 7.07 14 4 C -0.31 -12.11 6.21 22.35 0.14 -11.97 14 5 I 0.03 0.97 39.75 -18.82 -0.75 0.22 14 6 C 0.51 26.94 6.73 85.03 0.57 27.51 14 7 O -0.53 -31.14 13.96 -4.68 -0.07 -31.20 14 8 N -0.40 -22.05 2.63 -607.64 -1.60 -23.65 14 9 C -0.39 -23.29 8.61 84.02 0.72 -22.56 14 10 H 0.09 5.34 7.81 -2.91 -0.02 5.31 14 11 C 0.03 2.01 4.33 84.95 0.37 2.38 14 12 N -0.85 -51.48 11.58 21.67 0.25 -51.23 14 13 Si 0.99 45.96 29.60 68.60 2.03 47.99 14 14 H -0.26 -11.30 7.11 99.48 0.71 -10.60 14 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 14 16 H -0.26 -11.76 7.11 99.48 0.71 -11.05 14 17 C 0.64 31.06 8.07 179.18 1.45 32.51 14 18 O -0.59 -31.78 16.13 -3.97 -0.06 -31.84 14 19 H 0.15 1.25 7.76 -2.38 -0.02 1.24 14 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 14 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 14 22 H 0.23 3.50 7.87 -2.91 -0.02 3.48 14 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 14 Total: -1.00 -81.27 240.11 4.38 -76.89 By element: Atomic # 1 Polarization: -6.50 SS G_CDS: 1.25 Total: -5.25 kcal Atomic # 6 Polarization: 32.46 SS G_CDS: 5.37 Total: 37.83 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -3.40 Total: -94.64 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -0.13 Total: -63.04 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 53 Polarization: 0.97 SS G_CDS: -0.75 Total: 0.22 kcal Total: -81.27 4.38 -76.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095977948.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.397 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds