Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86798 * 119.99752 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99560 * 3 2 1 5 5 H 1.48501 * 109.47293 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.46680 * 149.99808 * 3 2 1 7 7 C 1.40350 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.41797 * 120.00166 * 0.27998 * 7 2 1 10 10 O 1.21783 * 119.99814 * 359.72096 * 9 7 2 11 11 C 1.47769 * 120.00360 * 179.72207 * 9 7 2 12 12 C 1.39805 * 120.13790 * 359.72286 * 11 9 7 13 13 C 1.37822 * 119.84956 * 179.67186 * 12 11 9 14 14 C 1.38595 * 120.14127 * 0.63003 * 13 12 11 15 15 Br 1.89097 * 119.85065 * 179.69604 * 14 13 12 16 16 C 1.38550 * 120.29233 * 359.66551 * 14 13 12 17 17 C 1.37854 * 120.14465 * 0.02562 * 16 14 13 18 18 C 1.50695 * 120.07451 * 179.97438 * 17 16 14 19 19 F 1.39905 * 109.47140 * 0.02710 * 18 17 16 20 20 F 1.39904 * 109.47254 * 120.01857 * 18 17 16 21 21 F 1.39897 * 109.47886 * 240.02306 * 18 17 16 22 22 H 0.97005 * 119.99946 * 0.02562 * 1 2 3 23 23 H 1.07997 * 120.07375 * 359.97438 * 12 11 9 24 24 H 1.07997 * 119.92540 * 180.29448 * 13 12 11 25 25 H 1.07995 * 119.92592 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4401 0.7001 7 6 2.0071 -1.2155 0.0005 8 1 3.0871 -1.2154 0.0001 9 6 1.2981 -2.4435 -0.0049 10 8 0.0803 -2.4435 -0.0049 11 6 2.0369 -3.7232 -0.0105 12 6 3.4349 -3.7266 -0.0164 13 6 4.1180 -4.9237 -0.0148 14 6 3.4220 -6.1221 -0.0206 15 35 4.3675 -7.7597 -0.0270 16 6 2.0365 -6.1256 -0.0210 17 6 1.3412 -4.9353 -0.0163 18 6 -0.1658 -4.9410 -0.0174 19 9 -0.6272 -6.2617 -0.0229 20 9 -0.6354 -4.2879 1.1273 21 9 -0.6339 -4.2787 -1.1572 22 1 -0.4850 0.8401 -0.0004 23 1 3.9784 -2.7934 -0.0172 24 1 5.1980 -4.9277 -0.0144 25 1 1.5001 -7.0630 -0.0252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098211546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = -180.216007 kcal Electronic energy + Delta-G solvation = -19490.876816 eV Core-core repulsion = 15679.059991 eV Total energy + Delta-G solvation = -3811.816826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 321.956 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.93641 -48.51220 -48.29330 -40.62415 -38.30421 -34.85739 -33.54249 -33.00764 -30.75844 -28.83467 -26.97229 -24.41066 -23.22204 -21.71228 -19.45601 -19.22835 -18.96012 -18.57158 -17.50873 -16.55832 -16.21314 -15.68575 -15.44576 -15.26303 -15.08469 -14.97706 -14.72526 -14.55316 -14.47753 -14.39100 -13.71266 -13.65916 -13.34862 -12.75304 -12.69722 -12.62909 -12.12335 -12.00466 -11.81699 -11.33810 -10.98485 -10.32382 -9.73229 -9.63743 -8.37084 -7.09220 -0.39206 -0.00271 0.44633 1.39308 1.41544 1.57788 1.82433 1.99220 2.20836 2.57098 2.86918 3.34087 3.55505 3.68267 3.73440 3.91636 3.98959 4.23173 4.43515 4.68202 4.89915 4.99608 5.20218 5.28015 5.57883 5.92535 6.66294 6.68604 8.18108 8.44817 Molecular weight = 321.96amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.005133 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.869218 B = 5453.262112 C = 6828.631771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.023 3.977 3 Si 0.995 3.005 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.526 4.526 8 H 0.104 0.896 9 C 0.342 3.658 10 O -0.563 6.563 11 C -0.072 4.072 12 C -0.089 4.089 13 C -0.056 4.056 14 C -0.102 4.102 15 Br -0.020 7.020 16 C -0.055 4.055 17 C -0.177 4.177 18 C 0.518 3.482 19 F -0.184 7.184 20 F -0.181 7.181 21 F -0.181 7.181 22 H 0.282 0.718 23 H 0.162 0.838 24 H 0.177 0.823 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.918 -11.183 -0.043 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.163 1.163 7 C -0.556 4.556 8 H 0.122 0.878 9 C 0.241 3.759 10 O -0.455 6.455 11 C -0.074 4.074 12 C -0.108 4.108 13 C -0.075 4.075 14 C -0.181 4.181 15 Br 0.065 6.935 16 C -0.075 4.075 17 C -0.180 4.180 18 C 0.464 3.536 19 F -0.166 7.166 20 F -0.163 7.163 21 F -0.163 7.163 22 H 0.093 0.907 23 H 0.180 0.820 24 H 0.194 0.806 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.479 -11.784 -0.041 16.451 hybrid contribution -0.802 1.053 -0.014 1.324 sum 10.677 -10.731 -0.055 15.138 Atomic orbital electron populations 1.70107 1.09997 1.30000 1.30519 1.27249 0.95449 1.05550 0.91445 0.85040 0.79239 0.74683 0.79684 1.18475 1.19919 1.16334 1.21436 0.96435 0.91604 1.46143 0.87794 1.18888 0.88899 0.87778 0.80368 1.90576 1.16090 1.88641 1.50225 1.21782 0.96535 0.95299 0.93808 1.21725 0.91565 0.99897 0.97625 1.21642 1.02049 0.89437 0.94357 1.21902 0.93581 0.93547 1.09118 1.96695 1.73860 1.25211 1.97737 1.20934 0.93377 0.97053 0.96104 1.20181 0.90935 0.95924 1.10932 1.18046 0.89051 0.72347 0.74162 1.93095 1.90859 1.36207 1.96398 1.93173 1.90268 1.81664 1.51163 1.93171 1.90310 1.81250 1.51538 0.90715 0.82012 0.80567 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.29 11.73 21.89 0.26 -44.03 15 2 C 0.02 1.18 5.50 85.40 0.47 1.65 15 3 Si 0.99 36.81 29.56 68.60 2.03 38.84 15 4 H -0.26 -9.24 7.11 99.48 0.71 -8.54 15 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 6 H -0.24 -8.06 7.11 99.48 0.71 -7.35 15 7 C -0.53 -27.04 8.86 23.66 0.21 -26.83 15 8 H 0.10 4.53 6.02 -2.91 -0.02 4.52 15 9 C 0.34 18.73 6.72 25.67 0.17 18.90 15 10 O -0.56 -35.13 9.85 -4.61 -0.05 -35.17 15 11 C -0.07 -3.18 5.86 -20.01 -0.12 -3.30 15 12 C -0.09 -2.99 9.44 22.55 0.21 -2.77 15 13 C -0.06 -1.44 9.77 22.26 0.22 -1.22 15 14 C -0.10 -2.77 6.24 22.43 0.14 -2.63 15 15 Br -0.02 -0.43 33.69 -20.37 -0.69 -1.12 15 16 C -0.05 -1.77 9.16 22.25 0.20 -1.56 15 17 C -0.18 -7.30 5.40 -19.59 -0.11 -7.41 15 18 C 0.52 23.59 2.78 71.23 0.20 23.79 15 19 F -0.18 -7.05 15.97 44.97 0.72 -6.34 15 20 F -0.18 -9.31 15.01 44.97 0.68 -8.63 15 21 F -0.18 -9.30 15.02 44.97 0.68 -8.63 15 22 H 0.28 14.48 8.29 -92.70 -0.77 13.71 15 23 H 0.16 4.88 6.20 -2.91 -0.02 4.86 15 24 H 0.18 3.13 8.06 -2.91 -0.02 3.11 15 25 H 0.16 4.38 7.15 -2.91 -0.02 4.36 15 Total: -1.00 -67.58 257.61 6.50 -61.09 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.27 Total: 5.39 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 1.60 Total: -1.40 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.26 Total: -44.03 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.05 Total: -35.17 kcal Atomic # 9 Polarization: -25.67 SS G_CDS: 2.07 Total: -23.60 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.69 Total: -1.12 kcal Total: -67.58 6.50 -61.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098211546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.128 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds