Wall clock time and date at job start Fri Apr 10 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39461 * 119.74025 * 178.68711 * 3 2 1 5 5 C 1.38490 * 119.05267 * 179.72988 * 4 3 2 6 6 C 1.38700 * 118.50729 * 0.55379 * 5 4 3 7 7 S 1.76192 * 120.30964 * 179.74154 * 6 5 4 8 8 O 1.42103 * 106.40640 * 156.18220 * 7 6 5 9 9 O 1.42098 * 106.40355 * 23.25800 * 7 6 5 10 10 N 1.65606 * 107.21728 * 269.72302 * 7 6 5 11 11 C 1.46957 * 120.59424 * 89.99573 * 10 7 6 12 12 C 1.53378 * 108.63600 * 235.24988 * 11 10 7 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59169 * 270.02386 * 10 7 6 24 24 C 1.38460 * 119.37991 * 359.46140 * 6 5 4 25 25 N 1.31594 * 120.91737 * 0.25726 * 24 6 5 26 26 H 1.08003 * 120.46883 * 0.04347 * 4 3 2 27 27 H 1.08004 * 120.74580 * 180.31682 * 5 4 3 28 28 H 1.09004 * 109.60829 * 115.50780 * 11 10 7 29 29 H 1.08993 * 109.75563 * 355.08239 * 11 10 7 30 30 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 31 31 H 1.08998 * 109.74677 * 70.41012 * 12 11 10 32 32 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 34 34 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 35 35 H 1.08994 * 109.60538 * 244.49252 * 23 10 7 36 36 H 1.09001 * 109.60973 * 5.00527 * 23 10 7 37 37 H 1.07998 * 119.54495 * 180.27640 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2593 1.2116 -0.0277 5 6 4.6441 1.1957 -0.0217 6 6 5.2919 -0.0305 0.0002 7 16 7.0522 -0.1062 0.0019 8 8 7.3995 -1.3594 0.5748 9 8 7.5068 1.1371 0.5184 10 7 7.5420 -0.1629 -1.5790 11 6 7.8175 1.0750 -2.3216 12 6 6.9626 1.0833 -3.5950 13 7 7.1290 -0.2058 -4.2807 14 6 7.5330 -0.2527 -5.5882 15 1 8.1307 0.5482 -5.9978 16 6 7.1792 -1.3325 -6.3857 17 7 8.0309 -1.8029 -7.2720 18 14 5.4944 -2.1176 -6.2009 19 1 4.5645 -1.5355 -7.2017 20 1 5.6041 -3.5822 -6.4203 21 1 4.9752 -1.8594 -4.8338 22 6 6.8480 -1.4436 -3.5398 23 6 7.7083 -1.4521 -2.2648 24 6 4.5424 -1.1944 0.0265 25 7 3.2272 -1.1518 0.0260 26 1 2.7222 2.1484 -0.0485 27 1 5.2069 2.1174 -0.0375 28 1 8.8733 1.1136 -2.5896 29 1 7.5647 1.9380 -1.7057 30 1 7.2896 1.8909 -4.2499 31 1 5.9140 1.2261 -3.3337 32 1 7.7836 -2.5572 -7.8295 33 1 5.7920 -1.4780 -3.2720 34 1 7.0993 -2.3052 -4.1582 35 1 8.7564 -1.5934 -2.5287 36 1 7.3813 -2.2597 -1.6098 37 1 5.0442 -2.1505 0.0481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104740009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:58 Heat of formation + Delta-G solvation = 46.798587 kcal Electronic energy + Delta-G solvation = -25277.623509 eV Core-core repulsion = 21570.230599 eV Total energy + Delta-G solvation = -3707.392911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.80060 -38.01034 -37.44450 -37.00926 -35.99477 -34.03205 -33.31071 -32.28150 -31.53551 -30.79426 -26.74551 -25.73524 -24.38139 -23.60244 -23.06658 -20.58197 -20.05111 -19.13965 -18.23948 -17.60162 -17.36999 -16.40354 -15.76232 -15.39793 -15.22917 -15.02358 -14.59511 -14.40329 -14.32453 -14.03274 -13.83906 -13.56301 -13.38686 -13.27662 -13.21124 -13.00788 -12.54317 -12.33598 -12.20845 -11.91457 -11.79073 -11.61937 -11.12693 -10.93762 -10.74342 -10.57777 -10.35223 -10.25736 -10.15360 -9.92490 -9.57887 -9.18202 -8.45690 -7.12752 -6.17346 -3.36261 -0.37125 0.24721 0.62891 2.03481 2.17402 2.81959 2.96596 3.29408 3.29906 3.42324 3.47464 3.59957 3.90366 4.07188 4.32369 4.42045 4.44543 4.64697 4.72531 4.86607 5.04228 5.12526 5.23766 5.29937 5.44653 5.60500 5.76972 5.83657 5.87782 5.92227 6.13634 6.23012 6.43857 6.45686 6.71019 6.79661 6.83441 7.09550 7.79661 8.17117 8.80251 9.59098 9.98361 10.96868 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.005445 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.397796 B = 5141.197521 C = 6587.449194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C 0.262 3.738 3 C 0.241 3.759 4 C -0.141 4.141 5 C 0.033 3.967 6 C -0.712 4.712 7 S 2.691 3.309 8 O -0.950 6.950 9 O -0.952 6.952 10 N -0.981 5.981 11 C 0.103 3.897 12 C 0.131 3.869 13 N -0.595 5.595 14 C -0.278 4.278 15 H 0.083 0.917 16 C 0.042 3.958 17 N -0.875 5.875 18 Si 0.832 3.168 19 H -0.293 1.293 20 H -0.293 1.293 21 H -0.258 1.258 22 C 0.129 3.871 23 C 0.099 3.901 24 C 0.211 3.789 25 N -0.463 5.463 26 H 0.157 0.843 27 H 0.165 0.835 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.991 5.886 15.342 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.050 5.050 2 C -0.056 4.056 3 C 0.103 3.897 4 C -0.164 4.164 5 C 0.006 3.994 6 C -0.798 4.798 7 S 2.777 3.223 8 O -0.940 6.940 9 O -0.942 6.942 10 N -0.822 5.822 11 C -0.024 4.024 12 C 0.003 3.997 13 N -0.318 5.318 14 C -0.405 4.405 15 H 0.101 0.899 16 C -0.160 4.160 17 N -0.515 5.515 18 Si 0.658 3.342 19 H -0.221 1.221 20 H -0.219 1.219 21 H -0.183 1.183 22 C 0.001 3.999 23 C -0.028 4.028 24 C 0.050 3.950 25 N -0.173 5.173 26 H 0.175 0.825 27 H 0.183 0.817 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.659 4.988 15.929 17.625 hybrid contribution -0.978 0.172 -0.572 1.146 sum -6.637 5.160 15.358 17.508 Atomic orbital electron populations 1.81270 1.11333 1.06429 1.05926 1.24940 0.91622 0.94137 0.94934 1.16652 0.86329 0.90506 0.96176 1.22130 0.95081 0.98555 1.00637 1.21383 0.94064 0.97339 0.86601 1.32658 1.30903 1.00525 1.15685 1.02300 0.73096 0.73777 0.73093 1.93590 1.81580 1.43263 1.75559 1.93576 1.78775 1.44382 1.77478 1.57434 1.80650 1.13813 1.30275 1.22136 1.02054 0.83672 0.94509 1.21345 0.95907 0.90043 0.92398 1.44199 1.79083 0.99127 1.09430 1.18752 1.27540 1.08631 0.85555 0.89919 1.25191 0.97579 0.96806 0.96378 1.70116 1.32745 1.23589 1.25026 0.87665 0.89390 0.78018 0.79088 1.22052 1.21938 1.18267 1.21817 0.95657 0.90951 0.91442 1.22371 1.02951 0.81990 0.95441 1.22615 0.88077 0.97737 0.86573 1.67706 1.10394 1.27323 1.11916 0.82493 0.81709 0.90220 0.89874 0.90575 0.95907 0.92626 0.95122 0.90269 0.89908 0.89917 0.79814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.83 18.54 41.84 0.78 -4.05 16 2 C 0.26 2.97 15.53 -22.47 -0.35 2.62 16 3 C 0.24 2.56 6.58 -85.07 -0.56 2.00 16 4 C -0.14 -1.14 9.80 -39.03 -0.38 -1.52 16 5 C 0.03 0.28 9.64 -39.32 -0.38 -0.09 16 6 C -0.71 -7.57 6.00 -39.33 -0.24 -7.81 16 7 S 2.69 32.85 5.71 -107.50 -0.61 32.24 16 8 O -0.95 -13.31 15.99 -57.17 -0.91 -14.23 16 9 O -0.95 -12.71 16.04 -57.17 -0.92 -13.63 16 10 N -0.98 -13.24 3.26 -113.00 -0.37 -13.61 16 11 C 0.10 1.36 6.54 -3.60 -0.02 1.34 16 12 C 0.13 2.11 6.67 -3.60 -0.02 2.09 16 13 N -0.60 -12.34 2.71 -171.76 -0.47 -12.81 16 14 C -0.28 -7.00 9.84 -15.06 -0.15 -7.15 16 15 H 0.08 2.23 8.05 -52.49 -0.42 1.81 16 16 C 0.04 1.13 4.80 -17.43 -0.08 1.04 16 17 N -0.88 -24.91 13.97 55.49 0.78 -24.14 16 18 Si 0.83 19.89 26.46 -169.99 -4.50 15.39 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.26 -5.78 4.99 56.52 0.28 -5.50 16 22 C 0.13 2.42 4.58 -3.36 -0.02 2.40 16 23 C 0.10 1.48 6.56 -3.36 -0.02 1.46 16 24 C 0.21 2.34 10.68 -17.57 -0.19 2.15 16 25 N -0.46 -5.58 10.28 -11.16 -0.11 -5.69 16 26 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 27 H 0.17 1.02 7.69 -52.48 -0.40 0.62 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.87 7.10 -51.93 -0.37 0.50 16 30 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 33 H 0.03 0.57 6.78 -51.93 -0.35 0.22 16 34 H 0.08 1.64 5.59 -51.93 -0.29 1.35 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.04 7.09 -51.93 -0.37 0.67 16 37 H 0.19 1.73 7.62 -52.49 -0.40 1.33 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -32.51 328.04 -7.77 -40.28 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.96 Total: -3.23 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.41 Total: -1.47 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.60 Total: -60.30 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -1.83 Total: -27.85 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.50 Total: 15.39 kcal Atomic # 16 Polarization: 32.85 SS G_CDS: -0.61 Total: 32.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.51 -7.77 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104740009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.076 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds