Wall clock time and date at job start Fri Apr 10 2020 18:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39461 * 119.74025 * 178.68711 * 3 2 1 5 5 C 1.38490 * 119.05267 * 179.72988 * 4 3 2 6 6 C 1.38700 * 118.50729 * 0.55379 * 5 4 3 7 7 S 1.76192 * 120.30964 * 179.74154 * 6 5 4 8 8 O 1.42103 * 106.40640 * 156.18220 * 7 6 5 9 9 O 1.42098 * 106.40355 * 23.25800 * 7 6 5 10 10 N 1.65606 * 107.21728 * 269.72302 * 7 6 5 11 11 C 1.46957 * 120.59424 * 89.99573 * 10 7 6 12 12 C 1.53378 * 108.63600 * 235.24988 * 11 10 7 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59169 * 270.02386 * 10 7 6 24 24 C 1.38460 * 119.37991 * 359.46140 * 6 5 4 25 25 N 1.31594 * 120.91737 * 0.25726 * 24 6 5 26 26 H 1.08003 * 120.46883 * 0.04347 * 4 3 2 27 27 H 1.08004 * 120.74580 * 180.31682 * 5 4 3 28 28 H 1.09004 * 109.60829 * 115.50780 * 11 10 7 29 29 H 1.08993 * 109.75563 * 355.08239 * 11 10 7 30 30 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 31 31 H 1.08998 * 109.74677 * 70.41012 * 12 11 10 32 32 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 34 34 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 35 35 H 1.08994 * 109.60538 * 244.49252 * 23 10 7 36 36 H 1.09001 * 109.60973 * 5.00527 * 23 10 7 37 37 H 1.07998 * 119.54495 * 180.27640 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2593 1.2116 -0.0277 5 6 4.6441 1.1957 -0.0217 6 6 5.2919 -0.0305 0.0002 7 16 7.0522 -0.1062 0.0019 8 8 7.3995 -1.3594 0.5748 9 8 7.5068 1.1371 0.5184 10 7 7.5420 -0.1629 -1.5790 11 6 7.8175 1.0750 -2.3216 12 6 6.9626 1.0833 -3.5950 13 7 7.1290 -0.2058 -4.2807 14 6 7.5330 -0.2527 -5.5882 15 1 8.1307 0.5482 -5.9978 16 6 7.1792 -1.3325 -6.3857 17 7 8.0309 -1.8029 -7.2720 18 14 5.4944 -2.1176 -6.2009 19 1 4.5645 -1.5355 -7.2017 20 1 5.6041 -3.5822 -6.4203 21 1 4.9752 -1.8594 -4.8338 22 6 6.8480 -1.4436 -3.5398 23 6 7.7083 -1.4521 -2.2648 24 6 4.5424 -1.1944 0.0265 25 7 3.2272 -1.1518 0.0260 26 1 2.7222 2.1484 -0.0485 27 1 5.2069 2.1174 -0.0375 28 1 8.8733 1.1136 -2.5896 29 1 7.5647 1.9380 -1.7057 30 1 7.2896 1.8909 -4.2499 31 1 5.9140 1.2261 -3.3337 32 1 7.7836 -2.5572 -7.8295 33 1 5.7920 -1.4780 -3.2720 34 1 7.0993 -2.3052 -4.1582 35 1 8.7564 -1.5934 -2.5287 36 1 7.3813 -2.2597 -1.6098 37 1 5.0442 -2.1505 0.0481 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104740009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:57 Heat of formation + Delta-G solvation = 22.628062 kcal Electronic energy + Delta-G solvation = -25278.671622 eV Core-core repulsion = 21570.230599 eV Total energy + Delta-G solvation = -3708.441023 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55941 -39.33745 -38.46127 -37.91031 -37.01406 -35.59077 -34.06179 -33.31632 -33.04304 -32.08963 -28.30771 -26.54114 -25.14005 -24.99312 -24.55362 -21.89412 -20.84727 -20.19368 -19.37227 -18.70795 -18.21361 -17.91973 -16.91072 -16.70710 -16.11081 -16.02329 -15.92002 -15.48960 -15.46378 -15.23578 -14.96366 -14.60131 -14.55318 -14.28490 -14.18273 -14.13914 -14.03673 -13.60605 -13.25839 -13.23942 -13.04442 -12.73339 -12.47541 -12.45363 -12.15687 -12.00295 -11.62540 -11.40655 -11.36152 -11.02260 -10.72719 -10.64152 -10.11972 -8.82849 -8.19436 -5.32250 -1.16574 -0.70411 -0.05974 1.17807 1.33703 1.36723 1.49513 1.52510 1.85523 2.16054 2.47718 2.48926 2.68100 2.97645 3.04806 3.34876 3.49120 3.66151 3.70437 3.78043 3.85132 4.25696 4.41368 4.45748 4.46382 4.51929 4.58286 4.65707 4.69499 4.89618 4.97398 5.13919 5.16646 5.18253 5.44499 5.59593 5.91453 5.99081 6.18042 6.33399 6.97918 7.70976 8.12842 8.98620 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.005445 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.397796 B = 5141.197521 C = 6587.449194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.280 3.720 3 C 0.225 3.775 4 C -0.122 4.122 5 C 0.036 3.964 6 C -0.714 4.714 7 S 2.713 3.287 8 O -0.969 6.969 9 O -0.959 6.959 10 N -0.985 5.985 11 C 0.107 3.893 12 C 0.125 3.875 13 N -0.611 5.611 14 C -0.256 4.256 15 H 0.055 0.945 16 C -0.010 4.010 17 N -0.928 5.928 18 Si 0.887 3.113 19 H -0.309 1.309 20 H -0.301 1.301 21 H -0.232 1.232 22 C 0.123 3.877 23 C 0.108 3.892 24 C 0.200 3.800 25 N -0.488 5.488 26 H 0.195 0.805 27 H 0.196 0.804 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 7.506 17.759 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.084 5.084 2 C -0.037 4.037 3 C 0.088 3.912 4 C -0.144 4.144 5 C 0.010 3.990 6 C -0.802 4.802 7 S 2.802 3.198 8 O -0.959 6.959 9 O -0.950 6.950 10 N -0.824 5.824 11 C -0.019 4.019 12 C -0.002 4.002 13 N -0.335 5.335 14 C -0.385 4.385 15 H 0.072 0.928 16 C -0.208 4.208 17 N -0.571 5.571 18 Si 0.715 3.285 19 H -0.238 1.238 20 H -0.229 1.229 21 H -0.155 1.155 22 C -0.004 4.004 23 C -0.019 4.019 24 C 0.039 3.961 25 N -0.199 5.199 26 H 0.212 0.788 27 H 0.213 0.787 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.596 6.631 18.403 20.643 hybrid contribution -0.661 -0.215 -1.228 1.412 sum -7.257 6.416 17.175 19.718 Atomic orbital electron populations 1.81290 1.12322 1.07528 1.07300 1.25070 0.91713 0.93115 0.93840 1.16826 0.85819 0.91312 0.97215 1.22512 0.94908 0.98964 0.98059 1.21854 0.94464 0.97643 0.85078 1.32394 1.29455 1.01497 1.16902 1.01483 0.73242 0.73033 0.72028 1.93568 1.82426 1.44233 1.75708 1.93567 1.79485 1.44585 1.77319 1.57437 1.81152 1.13193 1.30614 1.22082 1.01095 0.84893 0.93832 1.21577 0.97681 0.87665 0.93233 1.44337 1.79336 1.01669 1.08143 1.18738 1.25438 1.06856 0.87437 0.92766 1.25632 0.99939 0.98215 0.96989 1.70204 1.34366 1.25178 1.27392 0.86774 0.85473 0.76495 0.79757 1.23757 1.22851 1.15532 1.21851 0.96775 0.89274 0.92488 1.22112 1.01646 0.83731 0.94434 1.22798 0.87916 0.98495 0.86923 1.67645 1.10895 1.28438 1.12916 0.78799 0.78670 0.90932 0.86161 0.90740 0.93788 0.93070 0.94179 0.92735 0.90788 0.87324 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -10.00 18.54 19.00 0.35 -9.65 16 2 C 0.28 5.79 15.53 88.33 1.37 7.16 16 3 C 0.23 4.11 6.58 40.54 0.27 4.38 16 4 C -0.12 -1.41 9.80 22.62 0.22 -1.18 16 5 C 0.04 0.45 9.64 22.44 0.22 0.66 16 6 C -0.71 -12.48 6.00 22.43 0.13 -12.34 16 7 S 2.71 56.75 5.71 -56.49 -0.32 56.43 16 8 O -0.97 -24.53 15.99 -128.00 -2.05 -26.58 16 9 O -0.96 -21.67 16.04 -128.00 -2.05 -23.73 16 10 N -0.99 -23.48 3.26 -511.42 -1.67 -25.15 16 11 C 0.11 2.49 6.54 86.42 0.57 3.05 16 12 C 0.12 3.68 6.67 86.42 0.58 4.26 16 13 N -0.61 -24.53 2.71 -697.32 -1.89 -26.41 16 14 C -0.26 -13.00 9.84 84.04 0.83 -12.18 16 15 H 0.05 3.01 8.05 -2.91 -0.02 2.99 16 16 C -0.01 -0.54 4.80 84.86 0.41 -0.13 16 17 N -0.93 -54.69 13.97 21.65 0.30 -54.39 16 18 Si 0.89 41.70 26.46 68.60 1.82 43.51 16 19 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 20 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 21 H -0.23 -9.74 4.99 99.48 0.50 -9.25 16 22 C 0.12 4.41 4.58 86.56 0.40 4.80 16 23 C 0.11 3.00 6.56 86.56 0.57 3.56 16 24 C 0.20 3.89 10.68 84.78 0.91 4.80 16 25 N -0.49 -10.62 10.28 -189.21 -1.94 -12.56 16 26 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 27 H 0.20 1.21 7.69 -2.91 -0.02 1.19 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.12 1.93 7.10 -2.39 -0.02 1.92 16 30 H 0.07 2.21 7.93 -2.39 -0.02 2.19 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.04 1.37 6.78 -2.39 -0.02 1.35 16 34 H 0.05 2.23 5.59 -2.39 -0.01 2.21 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.11 2.46 7.09 -2.39 -0.02 2.44 16 37 H 0.19 3.19 7.62 -2.91 -0.02 3.17 16 Total: -1.00 -71.80 328.04 -0.09 -71.89 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 0.91 Total: -0.20 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 6.46 Total: 6.84 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.85 Total: -128.16 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -4.10 Total: -50.31 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.82 Total: 43.51 kcal Atomic # 16 Polarization: 56.75 SS G_CDS: -0.32 Total: 56.43 kcal Total: -71.80 -0.09 -71.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104740009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.515 kcal (2) G-P(sol) polarization free energy of solvation -71.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds