Wall clock time and date at job start Fri Apr 10 2020 18:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42105 * 110.54405 * 2 1 4 4 O 1.42102 * 110.54437 * 223.25179 * 2 1 3 5 5 N 1.65594 * 104.45223 * 111.62581 * 2 1 3 6 6 C 1.46929 * 120.63261 * 90.00157 * 5 2 1 7 7 C 1.53196 * 108.77486 * 233.63338 * 6 5 2 8 8 C 1.53035 * 109.30995 * 305.36045 * 7 6 5 9 9 C 1.53042 * 109.54021 * 61.36728 * 8 7 6 10 10 H 1.09006 * 109.49541 * 58.58370 * 9 8 7 11 11 N 1.46497 * 109.49711 * 178.68100 * 9 8 7 12 12 C 1.34779 * 119.99784 * 274.99643 * 11 9 8 13 13 O 1.21280 * 120.00264 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99870 * 180.02562 * 12 11 9 15 15 S 1.80995 * 109.47055 * 180.02562 * 14 12 11 16 16 C 1.76206 * 99.99891 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99809 * 180.02562 * 16 15 14 19 19 N 1.31625 * 120.00057 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99676 * 179.97438 * 18 16 15 21 21 H 1.48491 * 109.47519 * 89.99804 * 20 18 16 22 22 H 1.48498 * 109.47055 * 209.99962 * 20 18 16 23 23 H 1.48509 * 109.47075 * 329.99638 * 20 18 16 24 24 C 1.46924 * 120.63330 * 270.02217 * 5 2 1 25 25 H 1.08999 * 109.47166 * 308.37209 * 1 2 3 26 26 H 1.08999 * 109.47237 * 68.37453 * 1 2 3 27 27 H 1.09007 * 109.47378 * 188.37531 * 1 2 3 28 28 H 1.08998 * 109.59209 * 113.84153 * 6 5 2 29 29 H 1.09003 * 109.58217 * 353.41434 * 6 5 2 30 30 H 1.09001 * 109.49651 * 65.31212 * 7 6 5 31 31 H 1.09001 * 109.49244 * 185.40784 * 7 6 5 32 32 H 1.09004 * 109.45792 * 181.38956 * 8 7 6 33 33 H 1.08999 * 109.46561 * 301.34510 * 8 7 6 34 34 H 0.96991 * 120.00099 * 95.00074 * 11 9 8 35 35 H 1.08998 * 109.46842 * 300.00477 * 14 12 11 36 36 H 1.08999 * 109.47019 * 60.00189 * 14 12 11 37 37 H 0.97003 * 119.99825 * 180.02562 * 19 18 16 38 38 H 1.08999 * 109.58511 * 6.58033 * 24 5 2 39 39 H 1.09005 * 109.70744 * 246.22578 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 2.4141 -2.0334 1.6987 7 6 1.5304 -2.4817 2.8671 8 6 1.8424 -1.6239 4.0955 9 6 1.5300 -0.1575 3.7886 10 1 0.4808 -0.0597 3.5095 11 7 1.7991 0.6584 4.9752 12 6 0.8563 0.7919 5.9291 13 8 -0.2146 0.2363 5.8054 14 6 1.1329 1.6318 7.1495 15 16 -0.3152 1.6136 8.2352 16 6 0.2683 2.6430 9.5408 17 1 1.2617 3.0639 9.4936 18 6 -0.5484 2.9119 10.6304 19 7 -1.7586 2.3975 10.6886 20 14 0.0705 4.0026 12.0149 21 1 -0.2742 5.4170 11.7226 22 1 -0.5668 3.5914 13.2916 23 1 1.5447 3.8662 12.1311 24 6 2.4135 0.3170 2.6306 25 1 -0.3633 0.6379 0.8057 26 1 -0.3633 0.3787 -0.9553 27 1 -0.3634 -1.0168 0.1497 28 1 3.4592 -2.2367 1.9319 29 1 2.1274 -2.5729 0.7959 30 1 0.4813 -2.3619 2.5966 31 1 1.7310 -3.5288 3.0939 32 1 1.2325 -1.9571 4.9353 33 1 2.8973 -1.7248 4.3506 34 1 2.6556 1.1026 5.0743 35 1 1.9919 1.2252 7.6832 36 1 1.3461 2.6564 6.8448 37 1 -2.3295 2.5858 11.4499 38 1 2.1267 1.3284 2.3428 39 1 3.4585 0.3079 2.9408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139097184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:07 Heat of formation + Delta-G solvation = -139.179211 kcal Electronic energy + Delta-G solvation = -22989.021385 eV Core-core repulsion = 19376.715073 eV Total energy + Delta-G solvation = -3612.306313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97631 -39.14562 -38.26663 -37.05249 -35.52067 -34.57495 -33.12445 -31.84136 -30.30000 -29.62442 -27.64173 -25.63153 -24.06579 -21.89960 -21.48625 -19.97486 -19.66669 -18.76811 -17.90098 -17.46951 -17.16855 -16.98967 -16.86811 -16.41230 -15.86759 -15.59044 -15.44942 -14.89721 -14.74270 -14.55725 -14.51816 -14.08806 -13.99995 -13.81086 -13.55955 -13.21917 -13.18136 -13.15088 -12.99033 -12.88866 -12.60138 -12.41466 -12.20489 -12.05263 -11.84959 -11.72873 -11.61494 -11.13519 -10.91040 -10.26218 -10.21030 -9.90347 -8.64820 -8.34109 -6.11372 -0.74478 1.26930 1.42947 1.44904 1.53464 1.61685 1.65511 2.27196 2.33365 2.89356 3.00276 3.13928 3.33185 3.54309 3.75217 3.97223 3.98919 4.02385 4.07840 4.18568 4.25912 4.34445 4.35194 4.51598 4.54866 4.77645 4.82180 4.91867 4.96713 5.01487 5.12474 5.24447 5.34004 5.43051 5.45368 5.62101 6.20711 6.52843 7.07699 7.27247 8.74979 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.002455 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.744729 B =11403.211329 C =11632.346190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.622 3.378 3 O -0.991 6.991 4 O -0.984 6.984 5 N -0.996 5.996 6 C 0.117 3.883 7 C -0.128 4.128 8 C -0.127 4.127 9 C 0.129 3.871 10 H 0.076 0.924 11 N -0.709 5.709 12 C 0.538 3.462 13 O -0.561 6.561 14 C -0.131 4.131 15 S -0.150 6.150 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.258 1.258 24 C 0.121 3.879 25 H 0.135 0.865 26 H 0.144 0.856 27 H 0.147 0.853 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.418 0.582 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.271 0.729 38 H 0.099 0.901 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -7.622 -21.195 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.816 4.816 2 S 2.719 3.281 3 O -0.981 6.981 4 O -0.975 6.975 5 N -0.833 5.833 6 C -0.007 4.007 7 C -0.168 4.168 8 C -0.166 4.166 9 C 0.023 3.977 10 H 0.094 0.906 11 N -0.363 5.363 12 C 0.324 3.676 13 O -0.439 6.439 14 C -0.283 4.283 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.819 3.181 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.182 1.182 24 C -0.006 4.006 25 H 0.154 0.846 26 H 0.162 0.838 27 H 0.165 0.835 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.374 -8.300 -22.025 25.335 hybrid contribution 0.759 1.283 1.592 2.181 sum 10.133 -7.017 -20.432 23.862 Atomic orbital electron populations 1.30475 1.24865 1.13374 1.12848 1.04395 0.78703 0.72625 0.72369 1.93570 1.79246 1.39338 1.85978 1.93566 1.79162 1.62216 1.62515 1.57590 1.84768 1.14974 1.25963 1.21648 1.01381 0.78010 0.99653 1.21915 1.00524 1.00397 0.93947 1.21856 1.02411 0.93869 0.98463 1.21384 1.00602 0.91126 0.84597 0.90621 1.45699 1.18204 1.52165 1.20275 1.19986 0.83718 0.80137 0.83749 1.90689 1.26181 1.48539 1.78500 1.23392 1.04096 1.03463 0.97321 1.85538 1.19846 1.66530 1.20397 1.23209 1.04124 1.35021 1.06996 0.89937 1.26108 0.94670 0.97542 1.00829 1.70177 1.09046 1.43961 1.31600 0.84969 0.78867 0.77873 0.76376 1.19378 1.20388 1.18202 1.21561 1.01081 0.93107 0.84834 0.84615 0.83781 0.83477 0.89593 0.87838 0.91270 0.88740 0.93740 0.90140 0.74514 0.87234 0.87175 0.92027 0.88293 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.47 10.99 113.37 1.25 -4.22 16 2 S 2.62 37.67 6.05 -56.49 -0.34 37.33 16 3 O -0.99 -21.44 16.73 -127.65 -2.14 -23.57 16 4 O -0.98 -19.52 16.72 -127.65 -2.13 -21.65 16 5 N -1.00 -12.66 3.22 -513.06 -1.65 -14.32 16 6 C 0.12 1.21 6.31 86.36 0.55 1.76 16 7 C -0.13 -1.52 6.08 30.67 0.19 -1.33 16 8 C -0.13 -2.19 5.46 30.62 0.17 -2.02 16 9 C 0.13 2.40 2.60 45.07 0.12 2.52 16 10 H 0.08 1.69 7.58 -2.38 -0.02 1.68 16 11 N -0.71 -15.45 5.08 -442.15 -2.25 -17.69 16 12 C 0.54 18.24 7.81 87.66 0.68 18.93 16 13 O -0.56 -24.15 15.53 -3.03 -0.05 -24.20 16 14 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 15 S -0.15 -8.12 20.57 -56.49 -1.16 -9.29 16 16 C -0.55 -30.62 9.50 67.96 0.65 -29.97 16 17 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 18 C 0.01 0.74 5.49 84.86 0.47 1.21 16 19 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 20 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 24 C 0.12 1.64 5.79 86.36 0.50 2.14 16 25 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.89 7.10 -2.39 -0.02 0.87 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.42 6.20 8.60 -92.71 -0.80 5.40 16 35 H 0.11 3.68 8.14 -2.40 -0.02 3.67 16 36 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.10 1.37 7.10 -2.39 -0.02 1.35 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -84.37 350.25 -2.15 -86.52 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.26 Total: 12.36 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.00 Total: -15.48 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -3.61 Total: -87.09 kcal Atomic # 8 Polarization: -65.11 SS G_CDS: -4.32 Total: -69.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 29.55 SS G_CDS: -1.50 Total: 28.04 kcal Total: -84.37 -2.15 -86.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139097184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.663 kcal (2) G-P(sol) polarization free energy of solvation -84.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds