Wall clock time and date at job start Fri Apr 10 2020 18:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.77227 * 127.34203 * 2 1 4 4 C 1.72211 * 94.84785 * 179.80765 * 3 2 1 5 5 O 1.21833 * 127.05660 * 180.20301 * 4 3 2 6 6 N 1.34237 * 105.88322 * 0.31663 * 4 3 2 7 7 C 1.46502 * 121.37973 * 179.87910 * 6 4 3 8 8 C 1.50696 * 109.47635 * 269.72436 * 7 6 4 9 9 O 1.21304 * 119.99700 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00160 * 180.02562 * 8 7 6 11 11 C 1.40598 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.40643 * 126.08430 * 359.68896 * 11 10 8 13 13 N 1.30913 * 108.38760 * 179.81413 * 12 11 10 14 14 N 1.40071 * 108.40370 * 0.44007 * 13 12 11 15 15 C 1.37319 * 126.06773 * 179.69053 * 14 13 12 16 16 H 1.08009 * 120.00176 * 174.16081 * 15 14 13 17 17 C 1.38993 * 120.00141 * 354.16687 * 15 14 13 18 18 N 1.31292 * 119.99659 * 5.93252 * 17 15 14 19 19 Si 1.86801 * 119.99934 * 185.93604 * 17 15 14 20 20 H 1.48498 * 109.47131 * 94.97842 * 19 17 15 21 21 H 1.48504 * 109.46805 * 214.97800 * 19 17 15 22 22 H 1.48504 * 109.47226 * 334.97535 * 19 17 15 23 23 C 1.35686 * 126.07872 * 179.97438 * 11 10 8 24 24 C 1.32573 * 127.33967 * 179.97438 * 2 1 3 25 25 C 1.50694 * 121.64265 * 0.02859 * 24 2 1 26 26 H 1.09000 * 109.47558 * 270.00654 * 1 2 3 27 27 H 1.09000 * 109.46989 * 30.00658 * 1 2 3 28 28 H 1.09007 * 109.46966 * 150.00431 * 1 2 3 29 29 H 1.08999 * 109.46904 * 149.71936 * 7 6 4 30 30 H 1.09002 * 109.47025 * 29.72350 * 7 6 4 31 31 H 0.96998 * 119.99942 * 359.97438 * 10 8 7 32 32 H 1.07998 * 125.80970 * 359.96597 * 12 11 10 33 33 H 0.97001 * 119.99270 * 180.02562 * 18 17 15 34 34 H 1.07998 * 126.24747 * 359.97438 * 23 11 10 35 35 H 1.09005 * 109.47207 * 269.97385 * 25 24 2 36 36 H 1.09001 * 109.47507 * 29.97431 * 25 24 2 37 37 H 1.09003 * 109.47173 * 149.97953 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4839 0.0058 5 8 5.1760 0.9095 0.0114 6 7 3.6507 -0.8025 0.0002 7 6 4.6312 -1.8910 0.0003 8 6 4.9675 -2.2643 -1.4205 9 8 4.4397 -1.6790 -2.3425 10 7 5.8540 -3.2493 -1.6666 11 6 6.1673 -3.5978 -2.9922 12 6 5.6303 -3.0109 -4.1520 13 7 6.1638 -3.5948 -5.1952 14 7 7.0513 -4.5804 -4.7447 15 6 7.8018 -5.4152 -5.5356 16 1 8.5267 -6.0778 -5.0861 17 6 7.6288 -5.4073 -6.9147 18 7 6.8344 -4.5226 -7.4715 19 14 8.5266 -6.6553 -7.9758 20 1 7.6404 -7.8202 -8.2268 21 1 8.8986 -6.0285 -9.2696 22 1 9.7544 -7.1093 -7.2745 23 6 7.0375 -4.5640 -3.3800 24 6 2.3111 -1.0540 0.0005 25 6 1.7706 -2.4607 0.0005 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8901 -0.5138 29 1 4.2131 -2.7566 0.5141 30 1 5.5357 -1.5653 0.5141 31 1 6.2758 -3.7176 -0.9293 32 1 4.9035 -2.2126 -4.1778 33 1 6.7134 -4.5174 -8.4340 34 1 7.6141 -5.2032 -2.7278 35 1 1.6403 -2.7999 1.0282 36 1 0.8095 -2.4807 -0.5133 37 1 2.4711 -3.1191 -0.5133 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139288127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:11 Heat of formation + Delta-G solvation = 24.015276 kcal Electronic energy + Delta-G solvation = -24203.912619 eV Core-core repulsion = 20495.531750 eV Total energy + Delta-G solvation = -3708.380869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.36563 -41.58434 -39.98386 -38.78936 -35.99614 -35.04237 -34.55718 -32.33385 -31.38252 -30.35198 -29.32065 -26.92659 -25.92105 -24.75126 -22.94905 -22.09864 -21.28307 -20.82527 -19.47421 -19.25469 -18.46460 -18.02529 -17.44623 -16.91013 -16.77583 -16.47435 -16.14274 -15.67662 -15.24810 -14.96540 -14.88699 -14.86526 -14.75503 -14.44370 -13.66760 -13.53483 -13.46771 -13.44092 -13.34163 -12.97567 -12.84772 -12.81010 -12.38349 -12.07996 -11.90046 -11.86736 -11.27741 -11.06914 -11.03723 -10.83384 -10.35954 -10.13300 -8.88663 -8.57896 -8.49373 -6.27004 -0.16309 0.36237 0.75542 1.03445 1.15347 1.39132 1.44384 1.57454 1.64723 1.82458 2.05462 2.28220 2.45866 2.86992 3.06436 3.49988 3.75384 3.80356 4.06562 4.11825 4.27346 4.41152 4.57189 4.58363 4.69490 4.76187 4.89552 4.98255 5.02098 5.06366 5.10523 5.26684 5.38966 5.41744 5.67154 5.93647 6.17273 6.27528 6.64416 6.70866 7.28176 7.44437 7.64809 8.50280 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.002679 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.238436 B =10449.313336 C =10579.791796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.202 4.202 3 S -0.008 6.008 4 C 0.468 3.532 5 O -0.522 6.522 6 N -0.513 5.513 7 C 0.093 3.907 8 C 0.480 3.520 9 O -0.570 6.570 10 N -0.607 5.607 11 C -0.045 4.045 12 C -0.060 4.060 13 N -0.313 5.313 14 N -0.168 5.168 15 C -0.354 4.354 16 H 0.143 0.857 17 C -0.007 4.007 18 N -0.825 5.825 19 Si 1.020 2.980 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.242 1.242 23 C -0.076 4.076 24 C 0.090 3.910 25 C -0.098 4.098 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.174 0.826 30 H 0.136 0.864 31 H 0.425 0.575 32 H 0.161 0.839 33 H 0.276 0.724 34 H 0.192 0.808 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.188 -0.517 19.960 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.321 4.321 3 S 0.235 5.765 4 C 0.151 3.849 5 O -0.405 6.405 6 N -0.232 5.232 7 C -0.036 4.036 8 C 0.266 3.734 9 O -0.449 6.449 10 N -0.253 5.253 11 C -0.151 4.151 12 C -0.235 4.235 13 N -0.145 5.145 14 N 0.063 4.937 15 C -0.485 4.485 16 H 0.160 0.840 17 C -0.219 4.219 18 N -0.453 5.453 19 Si 0.839 3.161 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.165 1.165 23 C -0.226 4.226 24 C -0.019 4.019 25 C -0.156 4.156 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.191 0.809 30 H 0.154 0.846 31 H 0.263 0.737 32 H 0.178 0.822 33 H 0.086 0.914 34 H 0.209 0.791 35 H 0.138 0.862 36 H 0.123 0.877 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.075 1.538 17.864 21.074 hybrid contribution 1.137 -1.314 0.175 1.746 sum -9.939 0.224 18.038 20.596 Atomic orbital electron populations 1.20297 0.82900 1.04296 1.04395 1.24019 1.00996 0.90171 1.16936 1.84945 0.97835 1.12850 1.80829 1.21867 0.94688 0.85829 0.82490 1.90921 1.21060 1.72979 1.55574 1.45619 1.07014 1.06480 1.64120 1.21833 0.95754 0.92843 0.93147 1.21402 0.79656 0.79837 0.92466 1.90647 1.53553 1.53559 1.47138 1.42287 1.42188 1.35555 1.05266 1.17292 1.07938 1.05083 0.84831 1.24072 1.05157 1.04049 0.90221 1.78161 1.09879 1.04734 1.21691 1.44860 1.24735 1.20420 1.03640 1.20648 1.20186 1.18113 0.89570 0.83995 1.26911 0.97059 0.99090 0.98802 1.70411 1.31462 1.31173 1.12251 0.84567 0.78640 0.76339 0.76591 1.18992 1.20341 1.16473 1.22036 1.08484 1.06457 0.85665 1.19814 0.80807 1.00082 1.01182 1.20930 1.02504 0.86542 1.05645 0.88405 0.90748 0.88499 0.80894 0.84636 0.73748 0.82249 0.91420 0.79096 0.86206 0.87662 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.10 71.23 0.72 0.09 16 2 C -0.20 -3.85 6.72 24.53 0.16 -3.68 16 3 S -0.01 -0.22 22.97 -56.49 -1.30 -1.51 16 4 C 0.47 15.02 8.27 129.88 1.07 16.10 16 5 O -0.52 -20.52 17.55 -4.77 -0.08 -20.60 16 6 N -0.51 -13.09 2.09 -647.50 -1.35 -14.44 16 7 C 0.09 1.95 5.47 85.63 0.47 2.42 16 8 C 0.48 15.73 7.60 87.66 0.67 16.40 16 9 O -0.57 -25.11 13.58 -3.10 -0.04 -25.15 16 10 N -0.61 -19.40 5.47 -303.93 -1.66 -21.06 16 11 C -0.05 -2.04 6.90 37.73 0.26 -1.78 16 12 C -0.06 -3.30 10.85 85.42 0.93 -2.37 16 13 N -0.31 -19.07 10.42 -56.47 -0.59 -19.65 16 14 N -0.17 -9.28 3.74 -190.01 -0.71 -9.99 16 15 C -0.35 -18.65 10.24 84.01 0.86 -17.79 16 16 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 17 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 18 N -0.83 -48.00 11.84 21.66 0.26 -47.75 16 19 Si 1.02 38.48 29.56 68.60 2.03 40.50 16 20 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 22 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 23 C -0.08 -3.43 11.49 83.38 0.96 -2.48 16 24 C 0.09 1.78 6.59 40.71 0.27 2.05 16 25 C -0.10 -1.15 9.07 71.23 0.65 -0.51 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.72 6.77 -2.38 -0.02 0.71 16 29 H 0.17 1.75 6.83 -2.39 -0.02 1.73 16 30 H 0.14 2.56 7.80 -2.39 -0.02 2.54 16 31 H 0.42 8.91 8.83 -92.71 -0.82 8.09 16 32 H 0.16 9.08 5.92 -2.91 -0.02 9.06 16 33 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.19 6.61 8.06 -2.91 -0.02 6.58 16 35 H 0.12 0.59 8.14 -2.38 -0.02 0.58 16 36 H 0.10 0.98 6.69 -2.39 -0.02 0.97 16 37 H 0.06 0.97 6.70 -2.39 -0.02 0.95 16 Total: -1.00 -88.66 335.48 4.36 -84.31 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.33 Total: 26.81 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 7.48 Total: 8.55 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -4.06 Total: -112.90 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.13 Total: -45.76 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.30 Total: -1.51 kcal Total: -88.66 4.36 -84.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139288127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.323 kcal (2) G-P(sol) polarization free energy of solvation -88.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds