Wall clock time and date at job start Fri Apr 10 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 C 1.38700 * 119.46606 * 89.99916 * 13 10 9 15 15 C 1.37686 * 119.68012 * 179.97438 * 14 13 10 16 16 C 1.37614 * 119.01641 * 359.96776 * 15 14 13 17 17 C 1.39452 * 121.75019 * 0.16372 * 16 15 14 18 18 C 1.37191 * 119.04884 * 359.51482 * 17 16 15 19 19 C 1.50566 * 116.18026 * 179.74839 * 17 16 15 20 20 C 1.53101 * 109.66451 * 28.90003 * 19 17 16 21 21 C 1.53284 * 112.03517 * 301.88629 * 20 19 17 22 22 N 1.40404 * 112.02605 * 180.24691 * 16 15 14 23 23 C 1.33614 * 110.75261 * 359.61229 * 22 16 15 24 24 O 1.21286 * 126.23546 * 180.32765 * 23 22 16 25 25 C 1.50961 * 135.67938 * 179.97438 * 15 14 13 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08000 * 120.16367 * 359.93674 * 14 13 10 29 29 H 1.08003 * 120.28300 * 180.38126 * 18 17 16 30 30 H 1.09002 * 109.43607 * 148.95414 * 19 17 16 31 31 H 1.08994 * 109.43884 * 268.84151 * 19 17 16 32 32 H 1.08996 * 108.96787 * 62.54677 * 20 19 17 33 33 H 1.09001 * 108.96686 * 181.31781 * 20 19 17 34 34 H 1.09003 * 109.69034 * 176.27690 * 21 20 19 35 35 H 1.09000 * 109.69594 * 296.82163 * 21 20 19 36 36 H 1.09006 * 110.45316 * 298.67850 * 25 15 14 37 37 H 1.09001 * 110.45282 * 61.22332 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 6 2.4209 -4.4895 2.6379 15 6 3.1018 -4.5614 3.8325 16 6 4.3792 -4.0546 3.9043 17 6 4.9991 -3.4683 2.8012 18 6 4.3197 -3.4047 1.6111 19 6 6.3955 -2.9502 3.0216 20 6 7.0828 -3.7707 4.1164 21 6 6.3063 -3.7315 5.4374 22 7 4.9359 -4.2093 5.1839 23 6 4.0698 -4.8059 6.0080 24 8 4.2582 -5.0708 7.1765 25 6 2.8056 -5.0926 5.2142 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 1.4175 -4.8814 2.5609 29 1 4.7831 -2.9605 0.7425 30 1 6.9638 -3.0336 2.0952 31 1 6.3506 -1.9046 3.3262 32 1 7.1652 -4.8056 3.7844 33 1 8.0833 -3.3715 4.2829 34 1 6.7916 -4.3786 6.1680 35 1 6.2755 -2.7095 5.8152 36 1 1.9553 -4.5678 5.6498 37 1 2.6141 -6.1650 5.1770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184948545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:29 Heat of formation + Delta-G solvation = -72.656025 kcal Electronic energy + Delta-G solvation = -25165.290473 eV Core-core repulsion = 21420.424871 eV Total energy + Delta-G solvation = -3744.865602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.86757 -38.57013 -36.45032 -36.15366 -35.38291 -34.76266 -34.66293 -31.12449 -30.98213 -30.63830 -28.03155 -25.89643 -24.57146 -23.65413 -22.21567 -20.96647 -19.69101 -18.37590 -18.13731 -17.18046 -17.09440 -16.60856 -16.39567 -16.15322 -15.23017 -14.75414 -14.52200 -14.34689 -14.15709 -13.98648 -13.87028 -13.42069 -13.16778 -13.05106 -12.94161 -12.71873 -12.07559 -12.02639 -11.46507 -11.37269 -11.28583 -11.15780 -11.08728 -10.98396 -10.87543 -10.61667 -10.53895 -10.31392 -10.23621 -10.07399 -9.91119 -8.65098 -8.35318 -8.05673 -6.52322 -3.95588 0.94414 1.40939 1.53903 2.32669 2.54829 3.14543 3.19685 3.20460 3.58105 3.96977 4.05013 4.19179 4.43600 4.51767 4.56157 4.64419 4.76404 4.92328 4.99733 5.03576 5.08392 5.26894 5.30197 5.36411 5.41746 5.46687 5.60677 5.63592 5.82318 5.88658 5.90393 6.14821 6.23480 6.43476 6.49168 6.77869 6.96767 7.03705 7.43304 7.75108 8.60693 8.74486 9.17169 10.63524 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.004741 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.477882 B = 5905.085733 C = 6517.663882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.032 3.968 3 Si 0.922 3.078 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.276 4.276 8 H 0.104 0.896 9 N -0.947 5.947 10 S 2.619 3.381 11 O -1.001 7.001 12 O -0.971 6.971 13 C -0.673 4.673 14 C 0.028 3.972 15 C -0.160 4.160 16 C 0.159 3.841 17 C -0.126 4.126 18 C 0.016 3.984 19 C -0.077 4.077 20 C -0.133 4.133 21 C 0.115 3.885 22 N -0.554 5.554 23 C 0.529 3.471 24 O -0.514 6.514 25 C -0.104 4.104 26 H 0.275 0.725 27 H 0.411 0.589 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.864 -4.531 7.976 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.416 4.416 8 H 0.121 0.879 9 N -0.700 5.700 10 S 2.709 3.291 11 O -0.990 6.990 12 O -0.961 6.961 13 C -0.753 4.753 14 C 0.008 3.992 15 C -0.164 4.164 16 C 0.063 3.937 17 C -0.130 4.130 18 C -0.004 4.004 19 C -0.114 4.114 20 C -0.171 4.171 21 C -0.005 4.005 22 N -0.277 5.277 23 C 0.319 3.681 24 O -0.390 6.390 25 C -0.143 4.143 26 H 0.085 0.915 27 H 0.247 0.753 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.218 -5.354 8.206 14.157 hybrid contribution 0.239 1.209 0.929 1.543 sum 10.458 -4.146 9.135 14.491 Atomic orbital electron populations 1.69689 1.05981 1.28355 1.47772 1.25236 0.95641 0.99450 0.97233 0.85999 0.79249 0.81197 0.78730 1.20011 1.20753 1.19319 1.19290 0.92144 0.82984 1.47158 0.87861 1.51751 1.17082 1.19290 1.81837 1.06105 0.73145 0.73616 0.76240 1.93421 1.59838 1.57778 1.87964 1.93475 1.61288 1.87000 1.54366 1.32108 1.07774 1.11078 1.24383 1.19984 0.98727 0.91737 0.88720 1.19417 0.95031 1.06260 0.95687 1.18542 0.93076 0.96626 0.85411 1.19257 0.97180 1.04210 0.92304 1.20389 0.91738 0.91926 0.96323 1.20401 0.91923 0.99642 0.99478 1.21814 0.99359 1.01953 0.93942 1.21896 0.79644 1.00487 0.98487 1.46422 1.15157 1.55896 1.10189 1.20677 0.85412 0.76078 0.85915 1.90756 1.80080 1.53650 1.14508 1.21045 0.97366 1.04459 0.91458 0.91534 0.75303 0.83994 0.83622 0.89499 0.90055 0.90959 0.89352 0.89271 0.90472 0.85785 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.43 13.06 55.49 0.72 -21.71 16 2 C 0.03 0.78 5.50 -17.43 -0.10 0.69 16 3 Si 0.92 18.88 29.55 -169.99 -5.02 13.86 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 7 C -0.28 -6.61 9.63 -15.06 -0.15 -6.75 16 8 H 0.10 2.32 7.82 -52.49 -0.41 1.91 16 9 N -0.95 -21.63 5.75 31.50 0.18 -21.45 16 10 S 2.62 54.60 5.69 -107.50 -0.61 53.98 16 11 O -1.00 -22.19 17.24 -57.17 -0.99 -23.17 16 12 O -0.97 -22.21 16.95 -57.17 -0.97 -23.17 16 13 C -0.67 -12.18 5.91 -39.21 -0.23 -12.41 16 14 C 0.03 0.46 9.51 -39.61 -0.38 0.08 16 15 C -0.16 -2.37 6.49 -104.92 -0.68 -3.05 16 16 C 0.16 2.35 6.24 -83.70 -0.52 1.83 16 17 C -0.13 -1.84 5.77 -104.62 -0.60 -2.44 16 18 C 0.02 0.26 9.38 -39.76 -0.37 -0.11 16 19 C -0.08 -0.83 6.07 -27.90 -0.17 -1.00 16 20 C -0.13 -1.18 5.78 -26.53 -0.15 -1.33 16 21 C 0.12 1.19 7.07 -3.44 -0.02 1.16 16 22 N -0.55 -7.42 3.16 -112.50 -0.36 -7.78 16 23 C 0.53 7.51 8.38 -10.86 -0.09 7.42 16 24 O -0.51 -8.53 17.99 5.55 0.10 -8.43 16 25 C -0.10 -1.26 6.87 -28.26 -0.19 -1.46 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.41 9.57 8.02 -34.47 -0.28 9.30 16 28 H 0.14 2.15 7.59 -52.49 -0.40 1.75 16 29 H 0.15 2.30 7.59 -52.48 -0.40 1.90 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -31.39 327.79 -9.66 -41.05 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.00 Total: 9.26 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -3.66 Total: -17.39 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.55 Total: -50.93 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -1.86 Total: -54.77 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Atomic # 16 Polarization: 54.60 SS G_CDS: -0.61 Total: 53.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.39 -9.66 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184948545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.603 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds