Wall clock time and date at job start Fri Apr 10 2020 18:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 S 1.65597 * 119.99912 * 180.27700 * 9 7 2 11 11 O 1.42096 * 106.40195 * 178.26333 * 10 9 7 12 12 O 1.42108 * 106.40105 * 311.18390 * 10 9 7 13 13 C 1.76199 * 107.22117 * 64.72090 * 10 9 7 14 14 C 1.38700 * 119.46606 * 89.99916 * 13 10 9 15 15 C 1.37686 * 119.68012 * 179.97438 * 14 13 10 16 16 C 1.37614 * 119.01641 * 359.96776 * 15 14 13 17 17 C 1.39452 * 121.75019 * 0.16372 * 16 15 14 18 18 C 1.37191 * 119.04884 * 359.51482 * 17 16 15 19 19 C 1.50566 * 116.18026 * 179.74839 * 17 16 15 20 20 C 1.53101 * 109.66451 * 28.90003 * 19 17 16 21 21 C 1.53284 * 112.03517 * 301.88629 * 20 19 17 22 22 N 1.40404 * 112.02605 * 180.24691 * 16 15 14 23 23 C 1.33614 * 110.75261 * 359.61229 * 22 16 15 24 24 O 1.21286 * 126.23546 * 180.32765 * 23 22 16 25 25 C 1.50961 * 135.67938 * 179.97438 * 15 14 13 26 26 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 28 28 H 1.08000 * 120.16367 * 359.93674 * 14 13 10 29 29 H 1.08003 * 120.28300 * 180.38126 * 18 17 16 30 30 H 1.09002 * 109.43607 * 148.95414 * 19 17 16 31 31 H 1.08994 * 109.43884 * 268.84151 * 19 17 16 32 32 H 1.08996 * 108.96787 * 62.54677 * 20 19 17 33 33 H 1.09001 * 108.96686 * 181.31781 * 20 19 17 34 34 H 1.09003 * 109.69034 * 176.27690 * 21 20 19 35 35 H 1.09000 * 109.69594 * 296.82163 * 21 20 19 36 36 H 1.09006 * 110.45316 * 298.67850 * 25 15 14 37 37 H 1.09001 * 110.45282 * 61.22332 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 16 2.1534 -3.8222 0.0081 11 8 1.1738 -4.8508 0.0477 12 8 3.1361 -3.7236 -1.0137 13 6 3.0296 -3.9107 1.5342 14 6 2.4209 -4.4895 2.6379 15 6 3.1018 -4.5614 3.8325 16 6 4.3792 -4.0546 3.9043 17 6 4.9991 -3.4683 2.8012 18 6 4.3197 -3.4047 1.6111 19 6 6.3955 -2.9502 3.0216 20 6 7.0828 -3.7707 4.1164 21 6 6.3063 -3.7315 5.4374 22 7 4.9359 -4.2093 5.1839 23 6 4.0698 -4.8059 6.0080 24 8 4.2582 -5.0708 7.1765 25 6 2.8056 -5.0926 5.2142 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 1.4175 -4.8814 2.5609 29 1 4.7831 -2.9605 0.7425 30 1 6.9638 -3.0336 2.0952 31 1 6.3506 -1.9046 3.3262 32 1 7.1652 -4.8056 3.7844 33 1 8.0833 -3.3715 4.2829 34 1 6.7916 -4.3786 6.1680 35 1 6.2755 -2.7095 5.8152 36 1 1.9553 -4.5678 5.6498 37 1 2.6141 -6.1650 5.1770 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184948545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:28 Heat of formation + Delta-G solvation = -94.401072 kcal Electronic energy + Delta-G solvation = -25166.233409 eV Core-core repulsion = 21420.424871 eV Total energy + Delta-G solvation = -3745.808538 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.97720 -39.75635 -38.01966 -37.50962 -36.64787 -36.46035 -36.38232 -32.76414 -32.20932 -31.69141 -29.19558 -26.89200 -26.36155 -24.77611 -23.33755 -22.10079 -20.80042 -20.05981 -19.82306 -18.55609 -18.27864 -17.97818 -17.74610 -17.46000 -16.55812 -16.22152 -15.99870 -15.56208 -15.28145 -15.22605 -14.99340 -14.83224 -14.33051 -14.20506 -14.02370 -13.78115 -13.67339 -13.09791 -13.06711 -12.95808 -12.88901 -12.78324 -12.38155 -12.36589 -12.24103 -12.09376 -11.94996 -11.80445 -11.55215 -11.49595 -11.25128 -10.12470 -9.84530 -9.26721 -8.25579 -5.82520 -0.40388 -0.12664 0.18697 1.20225 1.51042 1.53883 1.54604 1.61492 2.26071 2.42142 2.73763 2.92170 3.02486 3.12297 3.29661 3.55631 3.73395 3.74706 3.81228 3.88452 4.09707 4.17538 4.27111 4.38621 4.50975 4.52665 4.63487 4.69440 4.86384 4.90854 4.96681 5.03352 5.13559 5.16610 5.16759 5.31239 5.61819 5.68165 5.86699 6.67356 6.80928 7.03291 7.38934 8.92986 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.004741 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.477882 B = 5905.085733 C = 6517.663882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.018 4.018 3 Si 0.976 3.024 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.308 4.308 8 H 0.110 0.890 9 N -0.977 5.977 10 S 2.679 3.321 11 O -1.009 7.009 12 O -0.994 6.994 13 C -0.687 4.687 14 C 0.020 3.980 15 C -0.160 4.160 16 C 0.160 3.840 17 C -0.122 4.122 18 C 0.002 3.998 19 C -0.081 4.081 20 C -0.125 4.125 21 C 0.104 3.896 22 N -0.552 5.552 23 C 0.526 3.474 24 O -0.540 6.540 25 C -0.100 4.100 26 H 0.270 0.730 27 H 0.406 0.594 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.144 0.856 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.476 -5.443 9.784 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.219 4.219 3 Si 0.801 3.199 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.442 4.442 8 H 0.128 0.872 9 N -0.730 5.730 10 S 2.771 3.229 11 O -0.999 6.999 12 O -0.984 6.984 13 C -0.775 4.775 14 C 0.000 4.000 15 C -0.164 4.164 16 C 0.063 3.937 17 C -0.126 4.126 18 C -0.017 4.017 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.015 4.015 22 N -0.274 5.274 23 C 0.317 3.683 24 O -0.418 6.418 25 C -0.138 4.138 26 H 0.079 0.921 27 H 0.241 0.759 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.161 0.839 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.824 -6.158 9.951 17.361 hybrid contribution -0.361 1.090 0.512 1.257 sum 12.464 -5.068 10.463 17.044 Atomic orbital electron populations 1.69795 1.07193 1.28375 1.52041 1.25926 0.96312 1.02136 0.97552 0.85163 0.78596 0.77705 0.78459 1.20219 1.21176 1.17737 1.19457 0.92430 0.83478 1.48813 0.87200 1.51299 1.16681 1.19197 1.85849 1.02476 0.72623 0.72141 0.75629 1.93434 1.60689 1.57420 1.88389 1.93464 1.62030 1.87094 1.55827 1.31195 1.08822 1.15030 1.22462 1.20088 0.99269 0.91714 0.88944 1.19585 0.94992 1.05639 0.96159 1.18766 0.93142 0.95695 0.86082 1.19593 0.98874 1.02972 0.91115 1.20516 0.91349 0.92206 0.97677 1.20581 0.89754 1.00324 1.01148 1.21815 1.00528 1.01612 0.92279 1.22254 0.78232 1.01302 0.99762 1.46645 1.16255 1.55226 1.09290 1.20939 0.86009 0.75668 0.85655 1.90751 1.80656 1.54804 1.15571 1.21169 0.97175 1.06199 0.89305 0.92119 0.75912 0.83081 0.83231 0.87883 0.88983 0.91348 0.85852 0.88220 0.89348 0.83851 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.19 13.06 21.65 0.28 -49.91 16 2 C -0.02 -0.92 5.50 84.86 0.47 -0.45 16 3 Si 0.98 39.67 29.55 68.60 2.03 41.69 16 4 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.31 -15.18 9.63 84.03 0.81 -14.37 16 8 H 0.11 5.02 7.82 -2.91 -0.02 5.00 16 9 N -0.98 -45.98 5.75 -54.26 -0.31 -46.29 16 10 S 2.68 111.49 5.69 -56.49 -0.32 111.17 16 11 O -1.01 -44.28 17.24 -128.00 -2.21 -46.49 16 12 O -0.99 -45.25 16.95 -128.00 -2.17 -47.42 16 13 C -0.69 -24.13 5.91 22.51 0.13 -24.00 16 14 C 0.02 0.61 9.51 22.25 0.21 0.82 16 15 C -0.16 -4.32 6.49 -20.06 -0.13 -4.45 16 16 C 0.16 4.26 6.24 37.91 0.24 4.49 16 17 C -0.12 -3.21 5.77 -19.86 -0.11 -3.33 16 18 C 0.00 0.07 9.38 22.16 0.21 0.28 16 19 C -0.08 -1.43 6.07 29.84 0.18 -1.25 16 20 C -0.12 -1.67 5.78 30.72 0.18 -1.49 16 21 C 0.10 1.74 7.07 86.32 0.61 2.35 16 22 N -0.55 -13.03 3.16 -628.89 -1.99 -15.02 16 23 C 0.53 13.41 8.38 88.26 0.74 14.15 16 24 O -0.54 -16.61 17.99 -3.05 -0.05 -16.66 16 25 C -0.10 -2.11 6.87 29.60 0.20 -1.90 16 26 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.41 19.85 8.02 -96.74 -0.78 19.07 16 28 H 0.15 4.34 7.59 -2.91 -0.02 4.32 16 29 H 0.15 4.53 7.59 -2.91 -0.02 4.51 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.14 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -69.01 327.79 -0.66 -69.67 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.35 Total: 28.41 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: 3.73 Total: -29.15 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -2.02 Total: -111.22 kcal Atomic # 8 Polarization: -106.14 SS G_CDS: -4.43 Total: -110.57 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: 111.49 SS G_CDS: -0.32 Total: 111.17 kcal Total: -69.01 -0.66 -69.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184948545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.735 kcal (2) G-P(sol) polarization free energy of solvation -69.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds